Rh4DG141600

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000200
Physical Location & Seq
Reverse (-)
28011150 .. 28012547
1398 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG141600.1

Sequence Viewer

Length: 1341 bp
ATGTGTTCAGAAATAGTGATCGAAGTAATCAGTAAGGAAACAGTTACACCATCATCTTCTTCTCTTCACCACCTTAGAACTTCCAACCTCTCTATTTTTGATCATCTTTTACCAGACTTGTATGTCCCCATACTTTTCTTCTATCCCAACAATAATATTACTGATCATAAGATCAATATAATTGATCATCACCACTCTATGATTACCGAAAGATCTAAGCTTCTGAAAACTTCATTATCTAAAACCCTCAGCCGCTTCTATCCCTTTGCAGGAAAAATATTTAGCCACAACAACATTCTTTCAATCTGTTGCAATGACAATGGGGCTGAATTTATTGAAACTCGTGTCAATTGTCCCATATCAAAGGTTATGGAAAAGCACAATTCTGGGATACTGAGTCAATTACTTCCAAATGACCTACAATCAACATTTGAAAGCACAGGCTATCTCCTATTAGTCCAAGCCAACTTCTTTGAATGTGGTGGACTTGCAATTGGGATTACCATTTCACACAAGATCGCGGACGGGTTTACACTCGGAACGTTCATCCGTAGCTGGGCAGCAATGTGCCTTGGCTCTGATGTAGTGGCTCTTCCAGCTACAGAATTTGGTGTTCCAGCATCTCTTTACCCACAACAAGATTTATTCATCAACTCATTGTCAACTTCCAAGGAATATGTTAATAGTGAAGCTTGCGTCAATAAGATATTTGTGTTTGATGCCTCAAATATTGTACGTCTCAAGTCTAAAGCCACCAGTGCCACCGTTCCAAATCCAACTCGTGTTGAAGTAGTGACAGCACTTCTCTGGAAATGTGCAATGGAAGCATCAAGATCAAACTTGAGTTTTACAAGGCCAGCTATGCTGTTTCTAGCAGCAAACATGCGGAAAGTATTGAAGCATCCCAATTTAATGGGAAATCTTGTAGGACATGTCTTTGCAGCAAAGACACAAGAAGGTGATACAACTCTTCAAAGCTTAGTTGCTATAATCAGGAAAAGCATTGAGGAATTTAAAGTGAAATATGGTGAGGGAGTTAGCGGGGATGCTATTTGCCAAAATTTTAAAGAGCATGGAGATTTAATGGATAATAATGATATAAATAACTATATCTGCAGCAGTTGGTGCAGGTTTGGCTTTTATGAAGCCAATTTTGGATGGGGAACGCCATCTTGGGTCACTTTTCCAGGTATGAAAATCAAGAATACAATTGTGTTGATTGATACAAAAGACGGTGAAGGCATGGAAGCATTCTTGAGTTTAAAAGAAGAGGACATGGCTGTAATTGAAACCAATAAGGAGCTGCTTGCATATGCTTCTCTCAATCCCACTGTTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

446

Amino Acids

49.48

Weight (kDa)

6.12

Isoelectric Point (pI)

41.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 7 - 435 4.9e-82 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 122
Acc36I ACCTGC 1 cut(s) 1119
AccII CGCG 1 cut(s) 521
AciI CCGC 4 cut(s) 253, 521, 886, 1041
AclI AACGTT 1 cut(s) 542
AcsI RAATTY 4 cut(s) 329, 605, 1010, 1060
AfaI GTAC 1 cut(s) 735
AfiI CCNNNNNNNGG 2 cut(s) 269, 556
AflIII ACRYGT 1 cut(s) 931
AgsI TTSAA 8 cut(s) 303, 338, 434, 476, 788, 898, 974, 1289
AjnI CCWGG 1 cut(s) 1186
AjuI GAANNNNNNNTTGG 4 cut(s) 1137, 1156, 1169, 1188
AluBI AGCT 7 cut(s) 220, 555, 599, 692, 860, 978, 1303
AluI AGCT 7 cut(s) 220, 555, 599, 692, 860, 978, 1303
Alw26I GTCTC 1 cut(s) 743
AoxI GGCC 1 cut(s) 854
ApeKI GCWGC 5 cut(s) 560, 875, 941, 1116, 1303
ApoI RAATTY 4 cut(s) 329, 605, 1010, 1060
AsuHPI GGTGA 5 cut(s) 59, 182, 971, 1040, 1247
BarI GAAGNNNNNNTAC 2 cut(s) 576, 608
BauI CACGAG 2 cut(s) 342, 780
BbvCI CCTCAGC 1 cut(s) 248
BbvI GCAGC 5 cut(s) 572, 887, 953, 1128, 1290
BccI CCATC 3 cut(s) 58, 1152, 1177
BciT130I CCWGG 1 cut(s) 1188
BciVI GTATCC 1 cut(s) 384
BclI TGATCA 3 cut(s) 100, 163, 184
BcoDI GTCTC 1 cut(s) 743
BfaI CTAG 1 cut(s) 872
BfmI CTRYAG 2 cut(s) 600, 1114
BfuAI ACCTGC 1 cut(s) 1119
BfuI GTATCC 1 cut(s) 384
BglII AGATCT 1 cut(s) 212
BisI GCNGC 6 cut(s) 253, 561, 876, 942, 1117, 1304
BlsI GCNGC 6 cut(s) 254, 562, 877, 943, 1118, 1305
Bme1390I CCNGG 1 cut(s) 1188
BmrFI CCNGG 1 cut(s) 1188
BmsI GCATC 5 cut(s) 629, 709, 836, 910, 1036
Bpu10I CCTNAGC 1 cut(s) 248
BpuEI CTTGAG 3 cut(s) 725, 862, 1276
BsaJI CCNNGG 2 cut(s) 571, 669
Bsc4I CCNNNNNNNGG 2 cut(s) 269, 556
Bse1I ACTGG 1 cut(s) 756
Bse3DI GCAATG 3 cut(s) 319, 570, 825
BseBI CCWGG 1 cut(s) 1188
BseDI CCNNGG 2 cut(s) 571, 669
BseGI GGATG 4 cut(s) 546, 901, 1051, 1163
BseLI CCNNNNNNNGG 2 cut(s) 269, 556
BseMI GCAATG 3 cut(s) 319, 570, 825
BseMII CTCAG 2 cut(s) 262, 386
BseNI ACTGG 1 cut(s) 756
BseXI GCAGC 5 cut(s) 572, 887, 953, 1128, 1290
BseYI CCCAGC 1 cut(s) 555
BsgI GTGCAG 1 cut(s) 1147
Bsh1236I CGCG 1 cut(s) 521
BshFI GGCC 1 cut(s) 856
BslFI GGGAC 2 cut(s) 110, 339
BslI CCNNNNNNNGG 2 cut(s) 269, 556
BsmAI GTCTC 1 cut(s) 743
BsmBI CGTCTC 1 cut(s) 743
BsmFI GGGAC 2 cut(s) 110, 339
BsmI GAATGC 1 cut(s) 1250
BsnI GGCC 1 cut(s) 856
Bsp143I GATC 8 cut(s) 18, 100, 163, 171, 184, 212, 516, 833
BspACI CCGC 4 cut(s) 253, 521, 886, 1041
BspANI GGCC 1 cut(s) 856
BspCNI CTCAG 2 cut(s) 261, 387
BspFNI CGCG 1 cut(s) 521
BspMAI CTGCAG 1 cut(s) 1118
BspMI ACCTGC 1 cut(s) 1119
BspQI GCTCTTC 1 cut(s) 597
BsrDI GCAATG 3 cut(s) 319, 570, 825
BsrI ACTGG 1 cut(s) 756
BssECI CCNNGG 2 cut(s) 571, 669
BssMI GATC 8 cut(s) 18, 100, 163, 171, 184, 212, 516, 833
BssSI CACGAG 2 cut(s) 342, 780
BssT1I CCWWGG 2 cut(s) 571, 669
Bst2BI CACGAG 2 cut(s) 342, 780
Bst2UI CCWGG 1 cut(s) 1188
Bst4CI ACNGT 4 cut(s) 43, 766, 1235, 1333
Bst6I CTCTTC 4 cut(s) 69, 597, 975, 1263
BstAPI GCANNNNNTGC 1 cut(s) 1125
BstC8I GCNNGC 3 cut(s) 694, 858, 1308
BstDEI CTNAG 5 cut(s) 74, 216, 248, 395, 979
BstF5I GGATG 4 cut(s) 546, 901, 1051, 1163
BstFNI CGCG 1 cut(s) 521
BstKTI GATC 8 cut(s) 21, 103, 166, 174, 187, 215, 519, 836
BstMAI GTCTC 1 cut(s) 743
BstMBI GATC 8 cut(s) 18, 100, 163, 171, 184, 212, 516, 833
BstMWI GCNNNNNNNGC 6 cut(s) 596, 758, 824, 862, 1125, 1134
BstNI CCWGG 1 cut(s) 1188
BstNSI RCATGY 2 cut(s) 886, 935
BstSCI CCNGG 1 cut(s) 1186
BstSFI CTRYAG 2 cut(s) 600, 1114
BstUI CGCG 1 cut(s) 521
BstV1I GCAGC 5 cut(s) 572, 887, 953, 1128, 1290
BstX2I RGATCY 1 cut(s) 212
BstXI CCANNNNNNTGG 1 cut(s) 913
BstYI RGATCY 1 cut(s) 212
BsuI GTATCC 1 cut(s) 384
BsuRI GGCC 1 cut(s) 856
BtsCI GGATG 4 cut(s) 546, 901, 1051, 1163
BtsIMutI CAGTG 2 cut(s) 763, 1329
BveI ACCTGC 1 cut(s) 1119
Cac8I GCNNGC 3 cut(s) 694, 858, 1308
CseI GACGC 1 cut(s) 685
Csp6I GTAC 1 cut(s) 734
CviAII CATG 5 cut(s) 883, 932, 1073, 1243, 1276
CviQI GTAC 1 cut(s) 734
DdeI CTNAG 5 cut(s) 74, 216, 248, 395, 979
DpnI GATC 8 cut(s) 20, 102, 165, 173, 186, 214, 518, 835
DpnII GATC 8 cut(s) 18, 100, 163, 171, 184, 212, 516, 833
DraI TTTAAA 3 cut(s) 1015, 1066, 1263
DrdI GACNNNNNNGTC 1 cut(s) 122
DseDI GACNNNNNNGTC 1 cut(s) 122
Eam1104I CTCTTC 4 cut(s) 69, 597, 975, 1263
EarI CTCTTC 4 cut(s) 69, 597, 975, 1263
Eco130I CCWWGG 2 cut(s) 571, 669
EcoRII CCWGG 1 cut(s) 1186
EcoT14I CCWWGG 2 cut(s) 571, 669
ErhI CCWWGG 2 cut(s) 571, 669
Esp3I CGTCTC 1 cut(s) 743
FaeI CATG 5 cut(s) 886, 935, 1076, 1246, 1279
FaqI GGGAC 2 cut(s) 110, 339
FatI CATG 5 cut(s) 882, 931, 1072, 1242, 1275
FauI CCCGC 1 cut(s) 1034
FauNDI CATATG 1 cut(s) 1312
FbaI TGATCA 3 cut(s) 100, 163, 184
Fnu4HI GCNGC 6 cut(s) 253, 561, 876, 942, 1117, 1304
FokI GGATG 4 cut(s) 533, 888, 1058, 1170
Fsp4HI GCNGC 6 cut(s) 253, 561, 876, 942, 1117, 1304
FspBI CTAG 1 cut(s) 872
GluI GCNGC 6 cut(s) 253, 561, 876, 942, 1117, 1304
GsaI CCCAGC 1 cut(s) 559
HaeIII GGCC 1 cut(s) 856
HgaI GACGC 1 cut(s) 685
Hin1II CATG 5 cut(s) 886, 935, 1076, 1246, 1279
HincII GTYRAC 1 cut(s) 663
HindII GTYRAC 1 cut(s) 663
HindIII AAGCTT 3 cut(s) 218, 690, 976
HinfI GANTC 1 cut(s) 397
HphI GGTGA 5 cut(s) 59, 182, 971, 1040, 1247
Hpy166II GTNNAC 3 cut(s) 485, 531, 663
Hpy188I TCNGA 4 cut(s) 10, 225, 539, 580
Hpy188III TCNNGA 5 cut(s) 808, 831, 994, 1201, 1255
Hpy8I GTNNAC 3 cut(s) 485, 531, 663
HpyAV CCTTC 2 cut(s) 950, 1232
HpyCH4III ACNGT 4 cut(s) 43, 766, 1235, 1333
HpyCH4IV ACGT 2 cut(s) 542, 736
HpyCH4V TGCA 8 cut(s) 269, 312, 491, 818, 941, 1116, 1128, 1310
HpyF10VI GCNNNNNNNGC 6 cut(s) 596, 758, 824, 862, 1125, 1134
HpyF3I CTNAG 5 cut(s) 74, 216, 248, 395, 979
HpySE526I ACGT 2 cut(s) 542, 736
Hsp92II CATG 5 cut(s) 886, 935, 1076, 1246, 1279
Ksp22I TGATCA 3 cut(s) 100, 163, 184
Kzo9I GATC 8 cut(s) 18, 100, 163, 171, 184, 212, 516, 833
LguI GCTCTTC 1 cut(s) 597
LmnI GCTCC 1 cut(s) 1300
Lsp1109I GCAGC 5 cut(s) 572, 887, 953, 1128, 1290
LweI GCATC 5 cut(s) 629, 709, 836, 910, 1036
MaeI CTAG 1 cut(s) 872
MaeII ACGT 2 cut(s) 542, 736
MaeIII GTNAC 3 cut(s) 43, 793, 1177
MalI GATC 8 cut(s) 20, 102, 165, 173, 186, 214, 518, 835
MboI GATC 8 cut(s) 18, 100, 163, 171, 184, 212, 516, 833
MboII GAAGA 7 cut(s) 48, 51, 56, 130, 584, 962, 1280
MfeI CAATTG 3 cut(s) 349, 492, 1209
MflI RGATCY 1 cut(s) 212
MlyI GAGTC 1 cut(s) 406
MmeI TCCRAC 2 cut(s) 108, 800
MnlI CCTC 6 cut(s) 98, 257, 733, 1000, 1024, 1264
MseI TTAA 6 cut(s) 681, 911, 1014, 1065, 1082, 1262
MspR9I CCNGG 1 cut(s) 1188
MunI CAATTG 3 cut(s) 349, 492, 1209
Mva1269I GAATGC 1 cut(s) 1250
MvaI CCWGG 1 cut(s) 1188
MvnI CGCG 1 cut(s) 521
MwoI GCNNNNNNNGC 6 cut(s) 596, 758, 824, 862, 1125, 1134
NdeI CATATG 1 cut(s) 1312
NdeII GATC 8 cut(s) 18, 100, 163, 171, 184, 212, 516, 833
NlaIII CATG 5 cut(s) 886, 935, 1076, 1246, 1279
NmuCI GTSAC 2 cut(s) 793, 1177
NspI RCATGY 2 cut(s) 886, 935
PciI ACATGT 1 cut(s) 931
PciSI GCTCTTC 1 cut(s) 597
PctI GAATGC 1 cut(s) 1250
PkrI GCNGC 6 cut(s) 254, 562, 877, 943, 1118, 1305
PleI GAGTC 1 cut(s) 405
PpsI GAGTC 1 cut(s) 405
PscI ACATGT 1 cut(s) 931
Psp1406I AACGTT 1 cut(s) 542
Psp6I CCWGG 1 cut(s) 1186
PspFI CCCAGC 1 cut(s) 555
PspGI CCWGG 1 cut(s) 1186
PstI CTGCAG 1 cut(s) 1118
PsuI RGATCY 1 cut(s) 212
RsaI GTAC 1 cut(s) 735
RsaNI GTAC 1 cut(s) 734
SapI GCTCTTC 1 cut(s) 597
SaqAI TTAA 6 cut(s) 681, 911, 1014, 1065, 1082, 1262
SatI GCNGC 6 cut(s) 253, 561, 876, 942, 1117, 1304
Sau3AI GATC 8 cut(s) 18, 100, 163, 171, 184, 212, 516, 833
SchI GAGTC 1 cut(s) 406
ScrFI CCNGG 1 cut(s) 1188
SfaNI GCATC 5 cut(s) 629, 709, 836, 910, 1036
SfcI CTRYAG 2 cut(s) 600, 1114
SmlI CTYRAG 3 cut(s) 740, 841, 1255
SmoI CTYRAG 3 cut(s) 740, 841, 1255
SsiI CCGC 4 cut(s) 253, 521, 886, 1041
SspI AATATT 3 cut(s) 157, 279, 730
SspMI CTAG 1 cut(s) 872
StyD4I CCNGG 1 cut(s) 1186
StyI CCWWGG 2 cut(s) 571, 669
TaaI ACNGT 4 cut(s) 43, 766, 1235, 1333
TaiI ACGT 2 cut(s) 545, 739
TaqI TCGA 1 cut(s) 21
TauI GCSGC 1 cut(s) 255
Tru1I TTAA 6 cut(s) 681, 911, 1014, 1065, 1082, 1262
Tru9I TTAA 6 cut(s) 681, 911, 1014, 1065, 1082, 1262
TscAI CASTG 2 cut(s) 763, 1336
TseFI GTSAC 2 cut(s) 793, 1177
TseI GCWGC 5 cut(s) 560, 875, 941, 1116, 1303
Tsp45I GTSAC 2 cut(s) 793, 1177
TspDTI ATGAA 5 cut(s) 222, 535, 637, 1158, 1208
TspGWI ACGGA 1 cut(s) 539
TspRI CASTG 2 cut(s) 763, 1336
XapI RAATTY 4 cut(s) 329, 605, 1010, 1060
XceI RCATGY 2 cut(s) 886, 935
XspI CTAG 1 cut(s) 872
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.