Rroxscaffold_1G00052710

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000200
Physical Location & Seq
Reverse (-)
73450209 .. 73450685
477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00052710.1

Sequence Viewer

Length: 477 bp
ATGCTTATGCAAATAGTAAACCTTCAGAAATTATTGGGGCATCCCACTTTAATGGGAAATCTTGTAGGAGCCTTTGCAGCAAAGACAGAAGAGAGTGATGCAAATCTTCCAAGCTTGGTTGCTCTACTCAGGGAAGGCATTGAAGAATTTAATGTGAAATATGGTAATAGAGTAACCAGCAATGATAAATGTAAAATTTCCAAAGAGTATGGAAACCTAATGGGAAAAGATGATATAGAATTCTATAGCTGCAACATTTGGTGCAGGTTTGGCTGCTACGAAGCCAATTTTGGATGGGGAAAGCCATCGTGGGTGACTGTTCCAGGTGTAGTAATGAAGAATTTTATTATATTGATTGATACAAAAGATGGTGAAGGCATAGAAGCAATCTTGAGTTTCAAAGAAGAAGACATGGCTGTGATGGAAACAAACAAGGAAATACTTGCATATGCTACTCTCGATCCTATTGTTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

158

Amino Acids

17.65

Weight (kDa)

4.75

Isoelectric Point (pI)

34.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 15 - 146 7.3e-12 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 255
AclWI GGATC 1 cut(s) 455
AcsI RAATTY 4 cut(s) 146, 195, 239, 340
AcuI CTGAAG 1 cut(s) 8
AgsI TTSAA 2 cut(s) 143, 400
AjnI CCWGG 1 cut(s) 322
AjuI GAANNNNNNNTTGG 2 cut(s) 273, 305
AluBI AGCT 2 cut(s) 114, 249
AluI AGCT 2 cut(s) 114, 249
AlwI GGATC 1 cut(s) 455
ApeKI GCWGC 3 cut(s) 77, 249, 273
ApoI RAATTY 4 cut(s) 146, 195, 239, 340
AsuHPI GGTGA 2 cut(s) 325, 383
BbsI GAAGAC 1 cut(s) 414
BbvI GCAGC 3 cut(s) 89, 236, 260
BccI CCATC 4 cut(s) 288, 313, 362, 415
BciT130I CCWGG 1 cut(s) 324
BfmI CTRYAG 1 cut(s) 244
BfuAI ACCTGC 1 cut(s) 255
BisI GCNGC 3 cut(s) 78, 250, 274
BlsI GCNGC 3 cut(s) 79, 251, 275
Bme1390I CCNGG 1 cut(s) 324
BmiI GGNNCC 1 cut(s) 70
BmrFI CCNGG 1 cut(s) 324
BmsI GCATC 2 cut(s) 49, 88
BpiI GAAGAC 1 cut(s) 414
BpuEI CTTGAG 1 cut(s) 412
BsaBI GATNNNNATC 1 cut(s) 102
Bse3DI GCAATG 1 cut(s) 187
Bse8I GATNNNNATC 1 cut(s) 102
BseBI CCWGG 1 cut(s) 324
BseGI GGATG 2 cut(s) 40, 299
BseJI GATNNNNATC 1 cut(s) 102
BseMI GCAATG 1 cut(s) 187
BseMII CTCAG 1 cut(s) 142
BseXI GCAGC 3 cut(s) 89, 236, 260
BsgI GTGCAG 1 cut(s) 283
Bsp143I GATC 1 cut(s) 460
BspCNI CTCAG 1 cut(s) 141
BspLI GGNNCC 1 cut(s) 70
BspMI ACCTGC 1 cut(s) 255
BspPI GGATC 1 cut(s) 455
BsrDI GCAATG 1 cut(s) 187
BssMI GATC 1 cut(s) 460
Bst2UI CCWGG 1 cut(s) 324
Bst4CI ACNGT 1 cut(s) 319
Bst6I CTCTTC 1 cut(s) 84
BstDEI CTNAG 1 cut(s) 128
BstF5I GGATG 2 cut(s) 40, 299
BstKTI GATC 1 cut(s) 463
BstMBI GATC 1 cut(s) 460
BstMWI GCNNNNNNNGC 2 cut(s) 77, 270
BstNI CCWGG 1 cut(s) 324
BstSCI CCNGG 1 cut(s) 322
BstSFI CTRYAG 1 cut(s) 244
BstV1I GCAGC 3 cut(s) 89, 236, 260
BstV2I GAAGAC 1 cut(s) 414
BstXI CCANNNNNNTGG 1 cut(s) 52
BtsCI GGATG 2 cut(s) 40, 299
BveI ACCTGC 1 cut(s) 255
CviAII CATG 1 cut(s) 412
CviJI RGCY 7 cut(s) 71, 114, 249, 273, 284, 304, 416
CviKI_1 RGCY 7 cut(s) 71, 114, 249, 273, 284, 304, 416
DdeI CTNAG 1 cut(s) 128
DpnI GATC 1 cut(s) 462
DpnII GATC 1 cut(s) 460
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Eco57I CTGAAG 1 cut(s) 8
EcoRI GAATTC 1 cut(s) 239
EcoRII CCWGG 1 cut(s) 322
FaeI CATG 1 cut(s) 415
FatI CATG 1 cut(s) 411
FauNDI CATATG 1 cut(s) 448
Fnu4HI GCNGC 3 cut(s) 78, 250, 274
FokI GGATG 2 cut(s) 27, 306
Fsp4HI GCNGC 3 cut(s) 78, 250, 274
GluI GCNGC 3 cut(s) 78, 250, 274
Hin1II CATG 1 cut(s) 415
HindIII AAGCTT 1 cut(s) 112
HphI GGTGA 2 cut(s) 325, 383
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 1 cut(s) 27
Hpy188III TCNNGA 2 cut(s) 391, 458
Hpy8I GTNNAC 1 cut(s) 19
HpyAV CCTTC 3 cut(s) 32, 128, 368
HpyCH4III ACNGT 1 cut(s) 319
HpyCH4V TGCA 6 cut(s) 10, 77, 101, 252, 264, 446
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 270
HpyF3I CTNAG 1 cut(s) 128
Hsp92II CATG 1 cut(s) 415
Kzo9I GATC 1 cut(s) 460
LmnI GCTCC 1 cut(s) 68
LpnPI CCDG 5 cut(s) 115, 190, 250, 309, 336
Lsp1109I GCAGC 3 cut(s) 89, 236, 260
LweI GCATC 2 cut(s) 49, 88
MaeIII GTNAC 2 cut(s) 172, 313
MalI GATC 1 cut(s) 462
MboI GATC 1 cut(s) 460
MboII GAAGA 6 cut(s) 98, 101, 155, 349, 416, 419
MluCI AATT 6 cut(s) 29, 146, 195, 239, 286, 340
MseI TTAA 2 cut(s) 50, 150
MslI CAYNNNNRTG 2 cut(s) 50, 416
MspR9I CCNGG 1 cut(s) 324
MvaI CCWGG 1 cut(s) 324
MwoI GCNNNNNNNGC 2 cut(s) 77, 270
NdeI CATATG 1 cut(s) 448
NdeII GATC 1 cut(s) 460
NlaIII CATG 1 cut(s) 415
NlaIV GGNNCC 1 cut(s) 70
NmuCI GTSAC 1 cut(s) 313
PkrI GCNGC 3 cut(s) 79, 251, 275
Psp6I CCWGG 1 cut(s) 322
PspGI CCWGG 1 cut(s) 322
PspN4I GGNNCC 1 cut(s) 70
RseI CAYNNNNRTG 2 cut(s) 50, 416
SaqAI TTAA 2 cut(s) 50, 150
SatI GCNGC 3 cut(s) 78, 250, 274
Sau3AI GATC 1 cut(s) 460
ScrFI CCNGG 1 cut(s) 324
SetI ASST 6 cut(s) 24, 116, 219, 251, 269, 328
SfaNI GCATC 2 cut(s) 49, 88
SfcI CTRYAG 1 cut(s) 244
SmiMI CAYNNNNRTG 2 cut(s) 50, 416
SmlI CTYRAG 1 cut(s) 391
SmoI CTYRAG 1 cut(s) 391
Sse9I AATT 6 cut(s) 29, 146, 195, 239, 286, 340
StyD4I CCNGG 1 cut(s) 322
TaaI ACNGT 1 cut(s) 319
TaqI TCGA 1 cut(s) 459
TasI AATT 6 cut(s) 29, 146, 195, 239, 286, 340
Tru1I TTAA 2 cut(s) 50, 150
Tru9I TTAA 2 cut(s) 50, 150
TseFI GTSAC 1 cut(s) 313
TseI GCWGC 3 cut(s) 77, 249, 273
Tsp45I GTSAC 1 cut(s) 313
TspDTI ATGAA 1 cut(s) 350
XapI RAATTY 4 cut(s) 146, 195, 239, 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.