Rw5G017110

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000200
Physical Location & Seq
Forward (+)
21870219 .. 21871626
1408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G017110.1

Sequence Viewer

Length: 1320 bp
ATGGATACACAGATGAAGGTTGAAATCATTGAGAGGAAAATAATTAAGCCATCCTCCCCAACTCCTCATCATCTTAGAAATTTTGAGCTGTCATTTTTCGATCAGATGGCAATTACAATTTACACTCCACTCCTTCTCTTCTTTCCAAATACTACTTCTAGTAAGCTTGAAATATGTGAGCATCTAACAGAATCATTAGGTAAAACTCTCACTCACTTCTACCCTTTAGCAGGAAGAATTAAAGGTAATACAGTGGTCGAATGTAATGATGATGGAGCTGAATTTGTCAAAGCGCAAGTCACCTGTTCCTTATTAGATTTTCTAGAAAATCCAGAAGCCGCGATATTAGAACAGTTCCTTCCAGCTGAGATTTTATCCAAGGAGGCAGGGACTGGTCCTTTGCTTCTTGTGCAAGTCAACTTGTTCGAGTGTGGTGGAATGGCAATTGGGTTTAGCATTTCACATAAGATTGCTGATGCCTCCACACTGTCCACATTCATCAATTGCTGGGCTCAAGTAACAAATACAACCAGTACTGATAGTGAGGTAATGGTTCCAGAATTTGGTTCGGCATCTCTCTTTCCACCACAAGATTTCTCTAATGACTCTTCACAGCCACCAGCCCGAGTATACTCCAAAAAGAACATCAATATAACAAGGAGGTATGTGTTTGATGCCTCAAACATTTCTGCTTTACAATCTAAAGTGGCTAGTTCAGCTGTGCCACGACCTACACGTGTAGAAGCGATTTCAGCACTCATTTGGAAATGTGCAGTCGAAGCATCGACTTCAAAATCAGGATCTCAAAGGCCATCAGTATTCAGCCAAGATGTGAACTTGCGTAAAAGGGTTGTGCCGCCCTTGCCTGAAAATTTTGCTGGGAATGTTGTAGGTTTTTATAGATCAAAGGCTGAAGTTGAAGACGGTACTGTTGTGGCCATAGATCTAAAAGACTTGGTTTCTAAATTCAGGGAAGGGATTGAAAACTATGCTGCTATAACAAAAACCATATTTGGTTCTGATGAAGCATGGCAAGGGATCAAAGATAGGTACAAGAACCTGAAAAAAAGTGATGACGTGGAGTTCTACAGCTGCACAAGTTGGTGTAGGTTTCCTTTTTATGAAGCAGATTTTGGATGGGGAAAGCCAAAATGGGTGAGCATTGCTAGTGTATCAATTGAAAATATTATTGTTTTGTTGGATAAAAGAGATGGGAATGGAATAGAAGCATGGTTGACTATGAACCAAGAAAACATGGCCTTATTTGAGAGCAGTACAGAGCTGCTTGCATATGCTTCTGTAAATCCAAGTGTCACCTAA

Protein Analysis

439

Amino Acids

48.65

Weight (kDa)

5.23

Isoelectric Point (pI)

45.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 5 - 428 1.1e-98 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 563
AccI GTMKAC 1 cut(s) 630
AccII CGCG 1 cut(s) 341
AciI CCGC 2 cut(s) 339, 857
AclWI GGATC 2 cut(s) 808, 1046
AcoI YGGCCR 1 cut(s) 936
AcsI RAATTY 5 cut(s) 79, 281, 560, 871, 965
AcuI CTGAAG 1 cut(s) 933
AcvI CACGTG 1 cut(s) 737
AfaI GTAC 4 cut(s) 535, 928, 1052, 1276
AfiI CCNNNNNNNGG 2 cut(s) 230, 563
AflIII ACRYGT 2 cut(s) 734, 736
AgsI TTSAA 6 cut(s) 23, 170, 792, 920, 983, 1181
AjiI CACGTC 1 cut(s) 1078
AjuI GAANNNNNNNTTGG 4 cut(s) 139, 171, 1116, 1148
AluBI AGCT 7 cut(s) 88, 166, 278, 365, 719, 1092, 1282
AluI AGCT 7 cut(s) 88, 166, 278, 365, 719, 1092, 1282
AlwI GGATC 2 cut(s) 808, 1046
AlwNI CAGNNNCTG 1 cut(s) 392
Ama87I CYCGRG 1 cut(s) 624
AoxI GGCC 3 cut(s) 809, 936, 1257
ApeKI GCWGC 3 cut(s) 992, 1092, 1282
ApoI RAATTY 5 cut(s) 79, 281, 560, 871, 965
ArsI GACNNNNNNTTYG 4 cut(s) 282, 314, 382, 414
AspLEI GCGC 1 cut(s) 295
AspS9I GGNCC 1 cut(s) 395
AsuHPI GGTGA 3 cut(s) 292, 1168, 1306
AvaI CYCGRG 1 cut(s) 624
AvaII GGWCC 1 cut(s) 395
BaeI ACNNNNGTAYC 2 cut(s) 918, 951
BalI TGGCCA 1 cut(s) 938
BanII GRGCYC 1 cut(s) 514
BbrPI CACGTG 1 cut(s) 737
BbsI GAAGAC 1 cut(s) 927
BbvI GCAGC 3 cut(s) 979, 1079, 1269
BccI CCATC 6 cut(s) 58, 100, 266, 820, 1131, 1205
BfaI CTAG 4 cut(s) 159, 323, 711, 1167
BfmI CTRYAG 1 cut(s) 1087
BglII AGATCT 1 cut(s) 943
BisI GCNGC 5 cut(s) 339, 857, 993, 1093, 1283
BlsI GCNGC 5 cut(s) 340, 858, 994, 1094, 1284
BmcAI AGTACT 1 cut(s) 535
Bme18I GGWCC 1 cut(s) 395
BmeT110I CYCGRG 1 cut(s) 624
BmgBI CACGTC 1 cut(s) 1078
BmgT120I GGNCC 1 cut(s) 395
BmiI GGNNCC 1 cut(s) 555
BmsI GCATC 5 cut(s) 190, 466, 581, 664, 791
BpiI GAAGAC 1 cut(s) 927
BpuEI CTTGAG 1 cut(s) 498
BsaAI YACGTR 1 cut(s) 737
BsaJI CCNNGG 1 cut(s) 378
Bsc4I CCNNNNNNNGG 2 cut(s) 230, 563
Bse1I ACTGG 2 cut(s) 397, 531
Bse3DI GCAATG 1 cut(s) 1161
BseDI CCNNGG 1 cut(s) 378
BseGI GGATG 2 cut(s) 50, 1142
BseLI CCNNNNNNNGG 2 cut(s) 230, 563
BseMI GCAATG 1 cut(s) 1161
BseMII CTCAG 1 cut(s) 357
BseNI ACTGG 2 cut(s) 397, 531
BseRI GAGGAG 1 cut(s) 54
BseXI GCAGC 3 cut(s) 979, 1079, 1269
BseYI CCCAGC 2 cut(s) 507, 878
BsgI GTGCAG 2 cut(s) 792, 1078
Bsh1236I CGCG 1 cut(s) 341
BshFI GGCC 3 cut(s) 811, 938, 1259
BsiHKCI CYCGRG 1 cut(s) 624
BslFI GGGAC 1 cut(s) 403
BslI CCNNNNNNNGG 2 cut(s) 230, 563
BsmFI GGGAC 1 cut(s) 403
BsnI GGCC 3 cut(s) 811, 938, 1259
BsoBI CYCGRG 1 cut(s) 624
Bsp1286I GDGCHC 1 cut(s) 514
Bsp143I GATC 5 cut(s) 100, 800, 902, 943, 1038
BspACI CCGC 2 cut(s) 339, 857
BspANI GGCC 3 cut(s) 811, 938, 1259
BspCNI CTCAG 1 cut(s) 358
BspFNI CGCG 1 cut(s) 341
BspLI GGNNCC 1 cut(s) 555
BspPI GGATC 2 cut(s) 808, 1046
BsrDI GCAATG 1 cut(s) 1161
BsrI ACTGG 2 cut(s) 397, 531
BssECI CCNNGG 1 cut(s) 378
BssMI GATC 5 cut(s) 100, 800, 902, 943, 1038
BssNAI GTATAC 1 cut(s) 631
BssT1I CCWWGG 1 cut(s) 378
Bst1107I GTATAC 1 cut(s) 631
Bst4CI ACNGT 5 cut(s) 253, 354, 489, 926, 931
Bst6I CTCTTC 2 cut(s) 143, 613
BstBAI YACGTR 1 cut(s) 737
BstC8I GCNNGC 1 cut(s) 1287
BstDEI CTNAG 2 cut(s) 74, 366
BstENI CCTNNNNNAGG 1 cut(s) 228
BstF5I GGATG 2 cut(s) 50, 1142
BstFNI CGCG 1 cut(s) 341
BstHHI GCGC 1 cut(s) 295
BstKTI GATC 5 cut(s) 103, 803, 905, 946, 1041
BstMBI GATC 5 cut(s) 100, 800, 902, 943, 1038
BstMWI GCNNNNNNNGC 5 cut(s) 409, 716, 752, 779, 862
BstSFI CTRYAG 1 cut(s) 1087
BstUI CGCG 1 cut(s) 341
BstV1I GCAGC 3 cut(s) 979, 1079, 1269
BstV2I GAAGAC 1 cut(s) 927
BstX2I RGATCY 2 cut(s) 800, 943
BstYI RGATCY 2 cut(s) 800, 943
BstZ17I GTATAC 1 cut(s) 631
BsuRI GGCC 3 cut(s) 811, 938, 1259
BtrI CACGTC 1 cut(s) 1078
BtsCI GGATG 2 cut(s) 50, 1142
BtsIMutI CAGTG 2 cut(s) 258, 485
Cac8I GCNNGC 1 cut(s) 1287
CaiI CAGNNNCTG 1 cut(s) 392
CfoI GCGC 1 cut(s) 295
Cfr13I GGNCC 1 cut(s) 395
Csp6I GTAC 4 cut(s) 534, 927, 1051, 1275
CviAII CATG 3 cut(s) 1029, 1230, 1255
CviQI GTAC 4 cut(s) 534, 927, 1051, 1275
DdeI CTNAG 2 cut(s) 74, 366
DpnI GATC 5 cut(s) 102, 802, 904, 945, 1040
DpnII GATC 5 cut(s) 100, 800, 902, 943, 1038
EaeI YGGCCR 1 cut(s) 936
Eam1104I CTCTTC 2 cut(s) 143, 613
EarI CTCTTC 2 cut(s) 143, 613
Eco130I CCWWGG 1 cut(s) 378
Eco24I GRGCYC 1 cut(s) 514
Eco47I GGWCC 1 cut(s) 395
Eco57I CTGAAG 1 cut(s) 933
Eco72I CACGTG 1 cut(s) 737
Eco88I CYCGRG 1 cut(s) 624
EcoNI CCTNNNNNAGG 1 cut(s) 228
EcoT14I CCWWGG 1 cut(s) 378
EcoT38I GRGCYC 1 cut(s) 514
ErhI CCWWGG 1 cut(s) 378
FaeI CATG 3 cut(s) 1032, 1233, 1258
FaqI GGGAC 1 cut(s) 403
FatI CATG 3 cut(s) 1028, 1229, 1254
FauNDI CATATG 1 cut(s) 1291
FblI GTMKAC 1 cut(s) 630
Fnu4HI GCNGC 5 cut(s) 339, 857, 993, 1093, 1283
FokI GGATG 2 cut(s) 37, 1149
FriOI GRGCYC 1 cut(s) 514
Fsp4HI GCNGC 5 cut(s) 339, 857, 993, 1093, 1283
FspBI CTAG 4 cut(s) 159, 323, 711, 1167
GlaI GCGC 1 cut(s) 294
GluI GCNGC 5 cut(s) 339, 857, 993, 1093, 1283
GsaI CCCAGC 2 cut(s) 511, 882
HaeIII GGCC 3 cut(s) 811, 938, 1259
HhaI GCGC 1 cut(s) 295
Hin1II CATG 3 cut(s) 1032, 1233, 1258
Hin6I GCGC 1 cut(s) 293
HinP1I GCGC 1 cut(s) 293
HincII GTYRAC 2 cut(s) 418, 1236
HindII GTYRAC 2 cut(s) 418, 1236
HindIII AAGCTT 1 cut(s) 164
HinfI GANTC 2 cut(s) 191, 605
HphI GGTGA 3 cut(s) 292, 1168, 1306
Hpy166II GTNNAC 5 cut(s) 418, 492, 631, 835, 1236
Hpy188I TCNGA 2 cut(s) 105, 1021
Hpy188III TCNNGA 4 cut(s) 323, 332, 557, 798
Hpy8I GTNNAC 5 cut(s) 418, 492, 631, 835, 1236
HpyAV CCTTC 4 cut(s) 10, 143, 368, 968
HpyCH4III ACNGT 5 cut(s) 253, 354, 489, 926, 931
HpyCH4IV ACGT 2 cut(s) 736, 1077
HpyCH4V TGCA 4 cut(s) 412, 773, 1095, 1289
HpyF10VI GCNNNNNNNGC 5 cut(s) 409, 716, 752, 779, 862
HpyF3I CTNAG 2 cut(s) 74, 366
HpySE526I ACGT 2 cut(s) 736, 1077
Hsp92II CATG 3 cut(s) 1032, 1233, 1258
HspAI GCGC 1 cut(s) 293
Kzo9I GATC 5 cut(s) 100, 800, 902, 943, 1038
LmnI GCTCC 1 cut(s) 275
Lsp1109I GCAGC 3 cut(s) 979, 1079, 1269
LweI GCATC 5 cut(s) 190, 466, 581, 664, 791
MaeI CTAG 4 cut(s) 159, 323, 711, 1167
MaeII ACGT 2 cut(s) 736, 1077
MaeIII GTNAC 3 cut(s) 298, 517, 1312
MalI GATC 5 cut(s) 102, 802, 904, 945, 1040
MboI GATC 5 cut(s) 100, 800, 902, 943, 1038
MboII GAAGA 4 cut(s) 130, 246, 600, 932
MfeI CAATTG 3 cut(s) 444, 502, 1176
MflI RGATCY 2 cut(s) 800, 943
MhlI GDGCHC 1 cut(s) 514
MlsI TGGCCA 1 cut(s) 938
MluNI TGGCCA 1 cut(s) 938
MlyI GAGTC 1 cut(s) 599
MmeI TCCRAC 1 cut(s) 1179
MnlI CCTC 8 cut(s) 27, 64, 75, 376, 490, 538, 654, 688
Mox20I TGGCCA 1 cut(s) 938
MscI TGGCCA 1 cut(s) 938
MseI TTAA 2 cut(s) 45, 240
Msp20I TGGCCA 1 cut(s) 938
MspA1I CMGCKG 3 cut(s) 365, 719, 1092
MunI CAATTG 3 cut(s) 444, 502, 1176
MvnI CGCG 1 cut(s) 341
MwoI GCNNNNNNNGC 5 cut(s) 409, 716, 752, 779, 862
NdeI CATATG 1 cut(s) 1291
NdeII GATC 5 cut(s) 100, 800, 902, 943, 1038
NlaIII CATG 3 cut(s) 1032, 1233, 1258
NlaIV GGNNCC 1 cut(s) 555
NmuCI GTSAC 2 cut(s) 298, 1312
PcsI WCGNNNNNNNCGW 1 cut(s) 733
PfeI GAWTC 1 cut(s) 191
PflMI CCANNNNNTGG 1 cut(s) 563
PkrI GCNGC 5 cut(s) 340, 858, 994, 1094, 1284
PleI GAGTC 1 cut(s) 599
PmaCI CACGTG 1 cut(s) 737
PmlI CACGTG 1 cut(s) 737
PpsI GAGTC 1 cut(s) 599
Ppu21I YACGTR 1 cut(s) 737
PspCI CACGTG 1 cut(s) 737
PspFI CCCAGC 2 cut(s) 507, 878
PspN4I GGNNCC 1 cut(s) 555
PspPI GGNCC 1 cut(s) 395
PstNI CAGNNNCTG 1 cut(s) 392
PsuI RGATCY 2 cut(s) 800, 943
PvuII CAGCTG 3 cut(s) 365, 719, 1092
RsaI GTAC 4 cut(s) 535, 928, 1052, 1276
RsaNI GTAC 4 cut(s) 534, 927, 1051, 1275
SaqAI TTAA 2 cut(s) 45, 240
SatI GCNGC 5 cut(s) 339, 857, 993, 1093, 1283
Sau3AI GATC 5 cut(s) 100, 800, 902, 943, 1038
Sau96I GGNCC 1 cut(s) 395
ScaI AGTACT 1 cut(s) 535
SchI GAGTC 1 cut(s) 599
SduI GDGCHC 1 cut(s) 514
SfaNI GCATC 5 cut(s) 190, 466, 581, 664, 791
SfcI CTRYAG 1 cut(s) 1087
SinI GGWCC 1 cut(s) 395
SmlI CTYRAG 1 cut(s) 513
SmoI CTYRAG 1 cut(s) 513
SsiI CCGC 2 cut(s) 339, 857
SspI AATATT 1 cut(s) 1186
SspMI CTAG 4 cut(s) 159, 323, 711, 1167
StyI CCWWGG 1 cut(s) 378
TaaI ACNGT 5 cut(s) 253, 354, 489, 926, 931
TaiI ACGT 2 cut(s) 739, 1080
TaqI TCGA 5 cut(s) 99, 258, 426, 777, 785
TatI WGTACW 2 cut(s) 533, 1274
TauI GCSGC 2 cut(s) 341, 859
TfiI GAWTC 1 cut(s) 191
Tru1I TTAA 2 cut(s) 45, 240
Tru9I TTAA 2 cut(s) 45, 240
TscAI CASTG 2 cut(s) 258, 492
TseFI GTSAC 2 cut(s) 298, 1312
TseI GCWGC 3 cut(s) 992, 1092, 1282
Tsp45I GTSAC 2 cut(s) 298, 1312
TspDTI ATGAA 5 cut(s) 29, 487, 1038, 1137, 1256
TspRI CASTG 2 cut(s) 258, 492
Van91I CCANNNNNTGG 1 cut(s) 563
VpaK11BI GGWCC 1 cut(s) 395
XagI CCTNNNNNAGG 1 cut(s) 228
XapI RAATTY 5 cut(s) 79, 281, 560, 871, 965
XbaI TCTAGA 1 cut(s) 322
XmiI GTMKAC 1 cut(s) 630
XspI CTAG 4 cut(s) 159, 323, 711, 1167
ZrmI AGTACT 1 cut(s) 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.