Rh4DG230600

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000200
Physical Location & Seq
Reverse (-)
43660603 .. 43664832
4230 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG230600.1

Sequence Viewer

Length: 417 bp
ATGGATATGCTTGACAAAGGCAGGGGATGTGTGCTGCATGTTCAAGCCAACTACTTTAAGTGCGGTGGAATCGGCCTTGGCATATGTCTTTCTCACAAGATAGCTGATGCAGCCACATTGAGCACATTCATCAGAAGTTGGGCCAATACTGCTTCTGGGATTGGCCAGAAAGTGTGTCCTATTTTCAACACCGTGTCAATAACCCCACCAAGAGATATCTCGATGACTCCACCAGCTCTTGAGAATCTTAAGATCAGAGATGACAAGTCCGTGACAAAGAGGTTTGTATTCAACGGCTCAAAGATTGCTGCTCTTAAGACCAAAGGACCTTCTATGAGTGTCAAACAAGCTACAAAGGTGGAGACGTCAATAAAACTGTTTAGGCAACATACGATTATCAACGATATTCCTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

138

Amino Acids

14.99

Weight (kDa)

9.81

Isoelectric Point (pI)

15.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 11 - 122 2.6e-19 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 368
AciI CCGC 1 cut(s) 63
AcoI YGGCCR 1 cut(s) 163
AcyI GRCGYC 1 cut(s) 365
AflII CTTAAG 2 cut(s) 248, 314
AgsI TTSAA 3 cut(s) 44, 187, 292
AluBI AGCT 3 cut(s) 104, 236, 350
AluI AGCT 3 cut(s) 104, 236, 350
Alw21I GWGCWC 1 cut(s) 125
Alw26I GTCTC 1 cut(s) 356
AoxI GGCC 3 cut(s) 73, 141, 163
ApeKI GCWGC 3 cut(s) 34, 110, 308
AspS9I GGNCC 2 cut(s) 141, 326
AvaII GGWCC 1 cut(s) 326
BalI TGGCCA 1 cut(s) 165
Bbv12I GWGCWC 1 cut(s) 125
BbvI GCAGC 3 cut(s) 21, 122, 295
BceAI ACGGC 1 cut(s) 310
BcoDI GTCTC 1 cut(s) 356
BfrI CTTAAG 2 cut(s) 248, 314
BisI GCNGC 3 cut(s) 35, 111, 309
BlsI GCNGC 3 cut(s) 36, 112, 310
Bme18I GGWCC 1 cut(s) 326
BmgT120I GGNCC 2 cut(s) 141, 326
BmsI GCATC 1 cut(s) 97
BpuEI CTTGAG 1 cut(s) 260
BsaHI GRCGYC 1 cut(s) 365
BsaJI CCNNGG 1 cut(s) 76
BseDI CCNNGG 1 cut(s) 76
BseGI GGATG 1 cut(s) 32
BseXI GCAGC 3 cut(s) 21, 122, 295
BshFI GGCC 3 cut(s) 75, 143, 165
BsiHKAI GWGCWC 1 cut(s) 125
BsmAI GTCTC 1 cut(s) 356
BsmBI CGTCTC 1 cut(s) 356
BsnI GGCC 3 cut(s) 75, 143, 165
Bsp1286I GDGCHC 1 cut(s) 125
Bsp143I GATC 1 cut(s) 252
BspACI CCGC 1 cut(s) 63
BspANI GGCC 3 cut(s) 75, 143, 165
BspTI CTTAAG 2 cut(s) 248, 314
BssECI CCNNGG 1 cut(s) 76
BssMI GATC 1 cut(s) 252
BssNI GRCGYC 1 cut(s) 365
BssT1I CCWWGG 1 cut(s) 76
Bst4CI ACNGT 2 cut(s) 193, 378
BstACI GRCGYC 1 cut(s) 365
BstAFI CTTAAG 2 cut(s) 248, 314
BstF5I GGATG 1 cut(s) 32
BstKTI GATC 1 cut(s) 255
BstMAI GTCTC 1 cut(s) 356
BstMBI GATC 1 cut(s) 252
BstMWI GCNNNNNNNGC 2 cut(s) 110, 149
BstNSI RCATGY 1 cut(s) 41
BstV1I GCAGC 3 cut(s) 21, 122, 295
BsuRI GGCC 3 cut(s) 75, 143, 165
BtsCI GGATG 1 cut(s) 32
Cfr13I GGNCC 2 cut(s) 141, 326
CviAII CATG 1 cut(s) 38
CviJI RGCY 9 cut(s) 47, 75, 104, 113, 143, 165, 236, 297, 350
CviKI_1 RGCY 9 cut(s) 47, 75, 104, 113, 143, 165, 236, 297, 350
DpnI GATC 1 cut(s) 254
DpnII GATC 1 cut(s) 252
EaeI YGGCCR 1 cut(s) 163
Eco130I CCWWGG 1 cut(s) 76
Eco32I GATATC 1 cut(s) 217
Eco47I GGWCC 1 cut(s) 326
EcoO109I RGGNCCY 1 cut(s) 326
EcoRV GATATC 1 cut(s) 217
EcoT14I CCWWGG 1 cut(s) 76
ErhI CCWWGG 1 cut(s) 76
Esp3I CGTCTC 1 cut(s) 356
FaeI CATG 1 cut(s) 41
FaiI YATR 6 cut(s) 8, 39, 83, 85, 335, 390
FatI CATG 1 cut(s) 37
FauNDI CATATG 1 cut(s) 83
Fnu4HI GCNGC 3 cut(s) 35, 111, 309
FokI GGATG 1 cut(s) 39
Fsp4HI GCNGC 3 cut(s) 35, 111, 309
GluI GCNGC 3 cut(s) 35, 111, 309
HaeIII GGCC 3 cut(s) 75, 143, 165
Hin1I GRCGYC 1 cut(s) 365
Hin1II CATG 1 cut(s) 41
HinfI GANTC 3 cut(s) 69, 226, 244
Hpy188I TCNGA 2 cut(s) 134, 257
Hpy188III TCNNGA 2 cut(s) 220, 239
HpyAV CCTTC 1 cut(s) 339
HpyCH4III ACNGT 2 cut(s) 193, 378
HpyCH4IV ACGT 1 cut(s) 365
HpyCH4V TGCA 2 cut(s) 37, 110
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 149
HpySE526I ACGT 1 cut(s) 365
Hsp92I GRCGYC 1 cut(s) 365
Hsp92II CATG 1 cut(s) 41
Kzo9I GATC 1 cut(s) 252
LpnPI CCDG 4 cut(s) 7, 141, 179, 246
Lsp1109I GCAGC 3 cut(s) 21, 122, 295
LweI GCATC 1 cut(s) 97
MaeII ACGT 1 cut(s) 365
MaeIII GTNAC 1 cut(s) 271
MalI GATC 1 cut(s) 254
MboI GATC 1 cut(s) 252
MhlI GDGCHC 1 cut(s) 125
MlsI TGGCCA 1 cut(s) 165
MluNI TGGCCA 1 cut(s) 165
MlyI GAGTC 1 cut(s) 220
MnlI CCTC 1 cut(s) 273
Mox20I TGGCCA 1 cut(s) 165
MscI TGGCCA 1 cut(s) 165
MseI TTAA 4 cut(s) 57, 249, 315, 415
Msp20I TGGCCA 1 cut(s) 165
MspCI CTTAAG 2 cut(s) 248, 314
MwoI GCNNNNNNNGC 2 cut(s) 110, 149
NdeI CATATG 1 cut(s) 83
NdeII GATC 1 cut(s) 252
NlaIII CATG 1 cut(s) 41
NmuCI GTSAC 1 cut(s) 271
NspI RCATGY 1 cut(s) 41
PfeI GAWTC 2 cut(s) 69, 244
PkrI GCNGC 3 cut(s) 36, 112, 310
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
PpuMI RGGWCCY 1 cut(s) 326
Psp5II RGGWCCY 1 cut(s) 326
PspPI GGNCC 2 cut(s) 141, 326
PspPPI RGGWCCY 1 cut(s) 326
SaqAI TTAA 4 cut(s) 57, 249, 315, 415
SatI GCNGC 3 cut(s) 35, 111, 309
Sau3AI GATC 1 cut(s) 252
Sau96I GGNCC 2 cut(s) 141, 326
SchI GAGTC 1 cut(s) 220
SduI GDGCHC 1 cut(s) 125
SetI ASST 7 cut(s) 106, 238, 284, 331, 352, 360, 368
SfaNI GCATC 1 cut(s) 97
SinI GGWCC 1 cut(s) 326
SmlI CTYRAG 3 cut(s) 239, 248, 314
SmoI CTYRAG 3 cut(s) 239, 248, 314
SsiI CCGC 1 cut(s) 63
StyI CCWWGG 1 cut(s) 76
TaaI ACNGT 2 cut(s) 193, 378
TaiI ACGT 1 cut(s) 368
TaqI TCGA 1 cut(s) 221
TfiI GAWTC 2 cut(s) 69, 244
Tru1I TTAA 4 cut(s) 57, 249, 315, 415
Tru9I TTAA 4 cut(s) 57, 249, 315, 415
TseFI GTSAC 1 cut(s) 271
TseI GCWGC 3 cut(s) 34, 110, 308
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 1 cut(s) 118
TspGWI ACGGA 1 cut(s) 259
Vha464I CTTAAG 2 cut(s) 248, 314
VpaK11BI GGWCC 1 cut(s) 326
XceI RCATGY 1 cut(s) 41
ZraI GACGTC 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.