Rh5AG188100

BAHD acyltransferase At5g47980-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
21608983 .. 21612301
3319 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG188100.1

Sequence Viewer

Length: 327 bp
ATGGTGAATAAAGACAAGGGTAATCCCCAAATAGGCATAAAATTACACAAACTACTGCTTCCAACTGCAATGGAATCAACACAAGAAAGCACAGGAGGGTATCTTCTACTAGTCCAGGCCAACTTCTTTGAATGCGGAGGAGTAGCGATTGGGGTCAGCATTTCACACAAGGCTGCAGATGCCTCTACACTCGGCACGTTCATCAGTAGCTGGGCTGCAGTGGCCCTTGGTGCAGAGGTAGAGGCACTTCCAGCTGCAGAATTTGGTGTTGCAGCTTCTAATTACCCAGCTAAATTTCTTCAACAAGACATCACTTCCAGCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

108

Amino Acids

11.19

Weight (kDa)

5.14

Isoelectric Point (pI)

39.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 19 - 79 3.7e-14 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 135
AcsI RAATTY 2 cut(s) 260, 293
AfiI CCNNNNNNNGG 1 cut(s) 32
AgsI TTSAA 2 cut(s) 131, 302
AhlI ACTAGT 1 cut(s) 109
AjnI CCWGG 1 cut(s) 114
AluBI AGCT 5 cut(s) 210, 254, 275, 290, 321
AluI AGCT 5 cut(s) 210, 254, 275, 290, 321
AlwNI CAGNNNCTG 2 cut(s) 210, 324
AoxI GGCC 2 cut(s) 117, 222
ApeKI GCWGC 5 cut(s) 173, 215, 254, 272, 321
ApoI RAATTY 2 cut(s) 260, 293
AspS9I GGNCC 1 cut(s) 223
AsuHPI GGTGA 1 cut(s) 16
BarI GAAGNNNNNNTAC 2 cut(s) 231, 263
BbvI GCAGC 5 cut(s) 160, 202, 241, 284, 308
BciT130I CCWGG 1 cut(s) 116
BcuI ACTAGT 1 cut(s) 109
BfaI CTAG 1 cut(s) 110
BfmI CTRYAG 3 cut(s) 174, 216, 255
BisI GCNGC 5 cut(s) 174, 216, 255, 273, 322
BlsI GCNGC 5 cut(s) 175, 217, 256, 274, 323
Bme1390I CCNGG 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 223
BmrFI CCNGG 1 cut(s) 116
BmsI GCATC 1 cut(s) 169
BsaJI CCNNGG 1 cut(s) 226
Bsc4I CCNNNNNNNGG 1 cut(s) 32
Bse3DI GCAATG 1 cut(s) 75
BseBI CCWGG 1 cut(s) 116
BseDI CCNNGG 1 cut(s) 226
BseLI CCNNNNNNNGG 1 cut(s) 32
BseMI GCAATG 1 cut(s) 75
BseRI GAGGAG 1 cut(s) 153
BseXI GCAGC 5 cut(s) 160, 202, 241, 284, 308
BseYI CCCAGC 2 cut(s) 210, 286
BsgI GTGCAG 1 cut(s) 252
BshFI GGCC 2 cut(s) 119, 224
BslI CCNNNNNNNGG 1 cut(s) 32
BsmI GAATGC 1 cut(s) 137
BsnI GGCC 2 cut(s) 119, 224
BspACI CCGC 1 cut(s) 135
BspANI GGCC 2 cut(s) 119, 224
BspMAI CTGCAG 3 cut(s) 178, 220, 259
BsrDI GCAATG 1 cut(s) 75
BssECI CCNNGG 1 cut(s) 226
BssT1I CCWWGG 1 cut(s) 226
Bst2UI CCWGG 1 cut(s) 116
BstMWI GCNNNNNNNGC 4 cut(s) 179, 221, 230, 251
BstNI CCWGG 1 cut(s) 116
BstSCI CCNGG 1 cut(s) 114
BstSFI CTRYAG 3 cut(s) 174, 216, 255
BstV1I GCAGC 5 cut(s) 160, 202, 241, 284, 308
BsuRI GGCC 2 cut(s) 119, 224
BtsI GCAGTG 1 cut(s) 225
BtsIMutI CAGTG 1 cut(s) 225
CaiI CAGNNNCTG 2 cut(s) 210, 324
Cfr13I GGNCC 1 cut(s) 223
CviJI RGCY 9 cut(s) 119, 173, 210, 215, 224, 254, 275, 290, 321
CviKI_1 RGCY 9 cut(s) 119, 173, 210, 215, 224, 254, 275, 290, 321
Eco130I CCWWGG 1 cut(s) 226
EcoRII CCWGG 1 cut(s) 114
EcoT14I CCWWGG 1 cut(s) 226
ErhI CCWWGG 1 cut(s) 226
FaiI YATR 1 cut(s) 38
Fnu4HI GCNGC 5 cut(s) 174, 216, 255, 273, 322
Fsp4HI GCNGC 5 cut(s) 174, 216, 255, 273, 322
FspBI CTAG 1 cut(s) 110
GluI GCNGC 5 cut(s) 174, 216, 255, 273, 322
GsaI CCCAGC 2 cut(s) 214, 290
HaeIII GGCC 2 cut(s) 119, 224
HinfI GANTC 1 cut(s) 74
HphI GGTGA 1 cut(s) 16
HpyCH4IV ACGT 1 cut(s) 197
HpyCH4V TGCA 6 cut(s) 68, 176, 218, 233, 257, 272
HpyF10VI GCNNNNNNNGC 4 cut(s) 179, 221, 230, 251
HpySE526I ACGT 1 cut(s) 197
LpnPI CCDG 6 cut(s) 78, 101, 128, 196, 264, 300
Lsp1109I GCAGC 5 cut(s) 160, 202, 241, 284, 308
LweI GCATC 1 cut(s) 169
MaeI CTAG 1 cut(s) 110
MaeII ACGT 1 cut(s) 197
MboII GAAGA 2 cut(s) 95, 290
MluCI AATT 4 cut(s) 41, 260, 280, 293
MmeI TCCRAC 1 cut(s) 86
MnlI CCTC 5 cut(s) 89, 131, 193, 229, 235
MspA1I CMGCKG 2 cut(s) 254, 321
MspR9I CCNGG 1 cut(s) 116
Mva1269I GAATGC 1 cut(s) 137
MvaI CCWGG 1 cut(s) 116
MwoI GCNNNNNNNGC 4 cut(s) 179, 221, 230, 251
NmeAIII GCCGAG 1 cut(s) 171
PctI GAATGC 1 cut(s) 137
PfeI GAWTC 1 cut(s) 74
PkrI GCNGC 5 cut(s) 175, 217, 256, 274, 323
Psp6I CCWGG 1 cut(s) 114
PspFI CCCAGC 2 cut(s) 210, 286
PspGI CCWGG 1 cut(s) 114
PspPI GGNCC 1 cut(s) 223
PstI CTGCAG 3 cut(s) 178, 220, 259
PstNI CAGNNNCTG 2 cut(s) 210, 324
PvuII CAGCTG 2 cut(s) 254, 321
SatI GCNGC 5 cut(s) 174, 216, 255, 273, 322
Sau96I GGNCC 1 cut(s) 223
ScrFI CCNGG 1 cut(s) 116
SetI ASST 7 cut(s) 200, 212, 240, 256, 277, 292, 323
SfaNI GCATC 1 cut(s) 169
SfcI CTRYAG 3 cut(s) 174, 216, 255
SpeI ACTAGT 1 cut(s) 109
Sse9I AATT 4 cut(s) 41, 260, 280, 293
SsiI CCGC 1 cut(s) 135
SspMI CTAG 1 cut(s) 110
StyD4I CCNGG 1 cut(s) 114
StyI CCWWGG 1 cut(s) 226
TaiI ACGT 1 cut(s) 200
TasI AATT 4 cut(s) 41, 260, 280, 293
TfiI GAWTC 1 cut(s) 74
TscAI CASTG 1 cut(s) 225
TseI GCWGC 5 cut(s) 173, 215, 254, 272, 321
TspDTI ATGAA 1 cut(s) 190
TspRI CASTG 1 cut(s) 225
XapI RAATTY 2 cut(s) 260, 293
XspI CTAG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.