Rroxscaffold_1G00052820

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000200
Physical Location & Seq
Reverse (-)
73560164 .. 73561699
1536 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00052820.1

Sequence Viewer

Length: 612 bp
ATGGGGCTGAGTTTAGGTTCTTTTGGGCAAAGATGTTCCCCTGGTCAGGGGAACGGGACTCATGTCCGGCTACTTCTCTTCTATCCCAGCAGTGATGTCGCTCACCGCCACACTTTGTTCACTGATAGATCCAAGCTTCTGAAAACATCATTGTCTGAAGCCCTCAGTCGCTTCTATCCCTATGCAGGCAGAACATTGATCCAGAACAACATTGTTTCAATCTGTTGCAATGAGCAGGGGGCTGCCTTTATCGAAGCTCGAGTGAACTGTCCCATATCCAAGGTGTTGGAAAAGCCTGATCTTGGGTTGCTGAAACAATTGCTTCCAACTGCCATGGTATCAACACAAGAAAGCACAGGAGGGTATCTTCTACTAGTCCAGGCCAACTTCTTTGAATGCGGAGGAGTTGCGATTGGGGTCAGCATTTCACACAAGGCTGCAGATGCCTCTACACTCGGCACGTTCATCAGTAGCTGGGCTGCAGTGGCCCTTGGTGCAGAGGTAGAGGCACTTCCAGCTGCAGAATTTGGTGTTGCAGCTTCTAATTACCCACAGCTAAATTTCTTCAACAAGACATCACCTCCAGCTGCTGACTGTTTACAAAGCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

203

Amino Acids

21.53

Weight (kDa)

6.88

Isoelectric Point (pI)

43.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 21 - 167 7.4e-34 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 106, 399
AclWI GGATC 2 cut(s) 123, 193
AcsI RAATTY 2 cut(s) 524, 559
AcuI CTGAAG 1 cut(s) 177
AfiI CCNNNNNNNGG 4 cut(s) 46, 47, 185, 302
AgsI TTSAA 3 cut(s) 219, 395, 568
AhlI ACTAGT 1 cut(s) 373
AjnI CCWGG 2 cut(s) 40, 378
AluBI AGCT 8 cut(s) 136, 257, 474, 518, 539, 556, 587, 606
AluI AGCT 8 cut(s) 136, 257, 474, 518, 539, 556, 587, 606
AlwI GGATC 2 cut(s) 123, 193
AlwNI CAGNNNCTG 2 cut(s) 474, 590
Ama87I CYCGRG 1 cut(s) 258
AoxI GGCC 2 cut(s) 381, 486
ApeKI GCWGC 6 cut(s) 242, 437, 479, 518, 536, 587
ApoI RAATTY 2 cut(s) 524, 559
AspS9I GGNCC 1 cut(s) 487
AsuHPI GGTGA 2 cut(s) 95, 570
AvaI CYCGRG 1 cut(s) 258
BarI GAAGNNNNNNTAC 2 cut(s) 495, 527
BbvI GCAGC 6 cut(s) 229, 424, 466, 505, 548, 574
BcgI CGANNNNNNTGC 2 cut(s) 79, 113
BciT130I CCWGG 2 cut(s) 42, 380
BcuI ACTAGT 1 cut(s) 373
BfaI CTAG 1 cut(s) 374
BfmI CTRYAG 3 cut(s) 438, 480, 519
BisI GCNGC 6 cut(s) 243, 438, 480, 519, 537, 588
BlsI GCNGC 6 cut(s) 244, 439, 481, 520, 538, 589
Bme1390I CCNGG 2 cut(s) 42, 380
BmeT110I CYCGRG 1 cut(s) 258
BmgT120I GGNCC 1 cut(s) 487
BmrFI CCNGG 2 cut(s) 42, 380
BmsI GCATC 1 cut(s) 433
BoxI GACNNNNGTC 1 cut(s) 62
BpmI CTGGAG 1 cut(s) 567
BsaJI CCNNGG 4 cut(s) 40, 279, 333, 490
BsaXI ACNNNNNCTCC 2 cut(s) 565, 595
Bsc4I CCNNNNNNNGG 4 cut(s) 46, 47, 185, 302
Bse3DI GCAATG 1 cut(s) 235
BseBI CCWGG 2 cut(s) 42, 380
BseDI CCNNGG 4 cut(s) 40, 279, 333, 490
BseLI CCNNNNNNNGG 4 cut(s) 46, 47, 185, 302
BseMI GCAATG 1 cut(s) 235
BseMII CTCAG 1 cut(s) 178
BseRI GAGGAG 1 cut(s) 417
BseXI GCAGC 6 cut(s) 229, 424, 466, 505, 548, 574
BseYI CCCAGC 2 cut(s) 86, 474
BsgI GTGCAG 1 cut(s) 516
BshFI GGCC 2 cut(s) 383, 488
BsiHKCI CYCGRG 1 cut(s) 258
BsiSI CCGG 1 cut(s) 67
BslFI GGGAC 2 cut(s) 70, 255
BslI CCNNNNNNNGG 4 cut(s) 46, 47, 185, 302
BsmFI GGGAC 2 cut(s) 70, 255
BsmI GAATGC 1 cut(s) 401
BsnI GGCC 2 cut(s) 383, 488
BsoBI CYCGRG 1 cut(s) 258
Bsp143I GATC 3 cut(s) 128, 198, 298
Bsp19I CCATGG 1 cut(s) 333
BspACI CCGC 2 cut(s) 106, 399
BspANI GGCC 2 cut(s) 383, 488
BspCNI CTCAG 1 cut(s) 177
BspMAI CTGCAG 3 cut(s) 442, 484, 523
BspPI GGATC 2 cut(s) 123, 193
BsrDI GCAATG 1 cut(s) 235
BssECI CCNNGG 4 cut(s) 40, 279, 333, 490
BssMI GATC 3 cut(s) 128, 198, 298
BssT1I CCWWGG 3 cut(s) 279, 333, 490
Bst2UI CCWGG 2 cut(s) 42, 380
Bst4CI ACNGT 2 cut(s) 269, 596
Bst6I CTCTTC 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 187
BstDEI CTNAG 2 cut(s) 8, 164
BstDSI CCRYGG 1 cut(s) 333
BstKTI GATC 3 cut(s) 131, 201, 301
BstMBI GATC 3 cut(s) 128, 198, 298
BstMWI GCNNNNNNNGC 4 cut(s) 443, 485, 494, 515
BstNI CCWGG 2 cut(s) 42, 380
BstPAI GACNNNNGTC 1 cut(s) 62
BstSCI CCNGG 2 cut(s) 40, 378
BstSFI CTRYAG 3 cut(s) 438, 480, 519
BstV1I GCAGC 6 cut(s) 229, 424, 466, 505, 548, 574
BstX2I RGATCY 1 cut(s) 128
BstXI CCANNNNNNTGG 1 cut(s) 286
BstYI RGATCY 1 cut(s) 128
BsuRI GGCC 2 cut(s) 383, 488
BtgI CCRYGG 1 cut(s) 333
BtsI GCAGTG 2 cut(s) 97, 489
BtsIMutI CAGTG 3 cut(s) 97, 120, 489
Cac8I GCNNGC 1 cut(s) 187
CaiI CAGNNNCTG 2 cut(s) 474, 590
Cfr13I GGNCC 1 cut(s) 487
CviAII CATG 2 cut(s) 62, 334
DdeI CTNAG 2 cut(s) 8, 164
DpnI GATC 3 cut(s) 130, 200, 300
DpnII GATC 3 cut(s) 128, 198, 298
Eam1104I CTCTTC 1 cut(s) 83
EarI CTCTTC 1 cut(s) 83
Eco130I CCWWGG 3 cut(s) 279, 333, 490
Eco57I CTGAAG 1 cut(s) 177
Eco88I CYCGRG 1 cut(s) 258
EcoRII CCWGG 2 cut(s) 40, 378
EcoT14I CCWWGG 3 cut(s) 279, 333, 490
ErhI CCWWGG 3 cut(s) 279, 333, 490
FaeI CATG 2 cut(s) 65, 337
FaiI YATR 4 cut(s) 63, 183, 275, 335
FaqI GGGAC 2 cut(s) 70, 255
FatI CATG 2 cut(s) 61, 333
Fnu4HI GCNGC 6 cut(s) 243, 438, 480, 519, 537, 588
Fsp4HI GCNGC 6 cut(s) 243, 438, 480, 519, 537, 588
FspBI CTAG 1 cut(s) 374
GluI GCNGC 6 cut(s) 243, 438, 480, 519, 537, 588
GsaI CCCAGC 2 cut(s) 90, 478
GsuI CTGGAG 1 cut(s) 567
HaeIII GGCC 2 cut(s) 383, 488
HapII CCGG 1 cut(s) 67
Hin1II CATG 2 cut(s) 65, 337
HindIII AAGCTT 2 cut(s) 134, 604
HinfI GANTC 1 cut(s) 58
HpaII CCGG 1 cut(s) 67
HphI GGTGA 2 cut(s) 95, 570
Hpy166II GTNNAC 3 cut(s) 120, 265, 599
Hpy188I TCNGA 2 cut(s) 141, 157
Hpy188III TCNNGA 1 cut(s) 202
Hpy8I GTNNAC 3 cut(s) 120, 265, 599
HpyCH4III ACNGT 2 cut(s) 269, 596
HpyCH4IV ACGT 1 cut(s) 461
HpyCH4V TGCA 7 cut(s) 185, 228, 440, 482, 497, 521, 536
HpyF10VI GCNNNNNNNGC 4 cut(s) 443, 485, 494, 515
HpyF3I CTNAG 2 cut(s) 8, 164
HpySE526I ACGT 1 cut(s) 461
Hsp92II CATG 2 cut(s) 65, 337
Kzo9I GATC 3 cut(s) 128, 198, 298
Lsp1109I GCAGC 6 cut(s) 229, 424, 466, 505, 548, 574
LweI GCATC 1 cut(s) 433
MaeI CTAG 1 cut(s) 374
MaeII ACGT 1 cut(s) 461
MalI GATC 3 cut(s) 130, 200, 300
MboI GATC 3 cut(s) 128, 198, 298
MboII GAAGA 3 cut(s) 70, 359, 556
MfeI CAATTG 1 cut(s) 317
MflI RGATCY 1 cut(s) 128
MluCI AATT 4 cut(s) 317, 524, 544, 559
MlyI GAGTC 1 cut(s) 52
MmeI TCCRAC 2 cut(s) 267, 350
MnlI CCTC 7 cut(s) 173, 353, 395, 457, 493, 499, 591
MspA1I CMGCKG 2 cut(s) 518, 587
MspI CCGG 1 cut(s) 67
MspR9I CCNGG 2 cut(s) 42, 380
MunI CAATTG 1 cut(s) 317
Mva1269I GAATGC 1 cut(s) 401
MvaI CCWGG 2 cut(s) 42, 380
MwoI GCNNNNNNNGC 4 cut(s) 443, 485, 494, 515
NcoI CCATGG 1 cut(s) 333
NdeII GATC 3 cut(s) 128, 198, 298
NlaIII CATG 2 cut(s) 65, 337
NmeAIII GCCGAG 1 cut(s) 435
PaeR7I CTCGAG 1 cut(s) 258
PctI GAATGC 1 cut(s) 401
PkrI GCNGC 6 cut(s) 244, 439, 481, 520, 538, 589
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
PshAI GACNNNNGTC 1 cut(s) 62
Psp6I CCWGG 2 cut(s) 40, 378
PspFI CCCAGC 2 cut(s) 86, 474
PspGI CCWGG 2 cut(s) 40, 378
PspPI GGNCC 1 cut(s) 487
PspXI VCTCGAGB 1 cut(s) 258
PstI CTGCAG 3 cut(s) 442, 484, 523
PstNI CAGNNNCTG 2 cut(s) 474, 590
PsuI RGATCY 1 cut(s) 128
PvuII CAGCTG 2 cut(s) 518, 587
SatI GCNGC 6 cut(s) 243, 438, 480, 519, 537, 588
Sau3AI GATC 3 cut(s) 128, 198, 298
Sau96I GGNCC 1 cut(s) 487
SchI GAGTC 1 cut(s) 52
ScrFI CCNGG 2 cut(s) 42, 380
SfaNI GCATC 1 cut(s) 433
SfcI CTRYAG 3 cut(s) 438, 480, 519
Sfr274I CTCGAG 1 cut(s) 258
SlaI CTCGAG 1 cut(s) 258
SmlI CTYRAG 1 cut(s) 258
SmoI CTYRAG 1 cut(s) 258
SpeI ACTAGT 1 cut(s) 373
Sse9I AATT 4 cut(s) 317, 524, 544, 559
SsiI CCGC 2 cut(s) 106, 399
SspMI CTAG 1 cut(s) 374
StyD4I CCNGG 2 cut(s) 40, 378
StyI CCWWGG 3 cut(s) 279, 333, 490
TaaI ACNGT 2 cut(s) 269, 596
TaiI ACGT 1 cut(s) 464
TaqI TCGA 2 cut(s) 252, 259
TasI AATT 4 cut(s) 317, 524, 544, 559
TscAI CASTG 3 cut(s) 97, 127, 489
TseI GCWGC 6 cut(s) 242, 437, 479, 518, 536, 587
TspDTI ATGAA 1 cut(s) 454
TspRI CASTG 3 cut(s) 97, 127, 489
XapI RAATTY 2 cut(s) 524, 559
XhoI CTCGAG 1 cut(s) 258
XspI CTAG 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.