MD05G1218900.v1.1

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0000200
Physical Location & Seq
Reverse (-)
34947528 .. 34948520
993 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1218900.v1.1.491

Sequence Viewer

Length: 993 bp
ATGTCAAATATTTTGGACAAACCAGATGCTGGGATGGGAAAACAGTTGCTTCCAACTGATGTAGATTCCACACAAGCAGACATGGGCTATCTTCTCCTAGTCCAGGCCAACTTCTTTCAATGTGGGGGACTGGCAATTGGAGTCAGCGTTTCACATAAGGTGTCGGATGCGTCTACACTCAGCGCATTCATTAAAAGTTGGGCATCAATTGCTCTTGGCTCTGCCAGCACATATCATGTAGAGCTCCCCGCAGAATTTGGGGCTGCGGCATCTCTCTTCACACCATTAGATTTCCTCAACGCACCACAGCCCGCTGTTGAGTTCCCTAAAGAAAAGTGTAAAACTAGGAGATTTGTGTTCAATGCCTCAAAGATTGCTGCTCTTAAGTCCAAAGCCGCCAGTGTCACCGTTCCAAATCCTACACGGGTTCAAGTAGTGTCGGCGCTCATTTGGAAGTGTGGCATGGAAGCATCAAGGTCAAACTTGGGTTGTGTGAGGCCATCTGAGTGGTTTGTACTGGTTAACATGCGAAAAATATTGGTGCAACCCTCGGCAGACAACGTATTGGGAAATTTTATTGGTGTCTTTGCGACAAAGACTGAAGCAAGTAAGTTTGTAGATAATGTTGAAAGCTTGGTTACTAAGCTTAGGGAAGAAATTGAGGGATTTAAAGTAAAATATGGTATTGGTATTAACGGGAATGATGTATGGGAATTTTCCAAGGATTATTGGAAACTCTTGATAAGGAATGATGTAGAAACATATAGCTGCAGCAGTTGGTGCAGGTTTCCTTTCTATGAAAACGATTTTGGATGGGGAAAGCCATCATGGGTGACTCAGGGCATGGAGTTCAAGAATCTACTTGTGTTGATGGATACACGAGACGGAGATGGCATAGAAGTATTCTTGACTCTCAAGGAAGAAGACGTGGCCATATTTGAAAGCAATAAGGAGCTGCTTGAGTATGCATCTTTAAATCCAACTGTAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

331

Amino Acids

36.49

Weight (kDa)

5.32

Isoelectric Point (pI)

28.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 5 - 319 3.5e-53 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 774
AccB7I CCANNNNNTGG 1 cut(s) 29
AccI GTMKAC 1 cut(s) 173
AciI CCGC 4 cut(s) 249, 266, 312, 396
AcoI YGGCCR 1 cut(s) 930
AcsI RAATTY 3 cut(s) 254, 571, 713
AcuI CTGAAG 1 cut(s) 621
AfaI GTAC 1 cut(s) 516
AfiI CCNNNNNNNGG 2 cut(s) 29, 103
AflII CTTAAG 1 cut(s) 383
AgsI TTSAA 6 cut(s) 119, 361, 431, 629, 853, 941
AjiI CACGTC 1 cut(s) 928
AjnI CCWGG 1 cut(s) 102
AjuI GAANNNNNNNTTGG 2 cut(s) 792, 824
AluBI AGCT 5 cut(s) 244, 633, 646, 768, 955
AluI AGCT 5 cut(s) 244, 633, 646, 768, 955
Alw21I GWGCWC 1 cut(s) 246
Alw26I GTCTC 1 cut(s) 876
AlwNI CAGNNNCTG 1 cut(s) 29
AoxI GGCC 3 cut(s) 105, 497, 930
ApeKI GCWGC 5 cut(s) 263, 377, 768, 771, 955
ApoI RAATTY 3 cut(s) 254, 571, 713
AspLEI GCGC 2 cut(s) 185, 445
AsuHPI GGTGA 2 cut(s) 397, 844
BalI TGGCCA 1 cut(s) 932
BanII GRGCYC 1 cut(s) 246
BauI CACGAG 1 cut(s) 879
BbsI GAAGAC 1 cut(s) 930
Bbv12I GWGCWC 1 cut(s) 246
BbvI GCAGC 5 cut(s) 250, 364, 755, 783, 942
BccI CCATC 6 cut(s) 28, 508, 807, 832, 865, 884
BciT130I CCWGG 1 cut(s) 104
BciVI GTATCC 1 cut(s) 868
BcoDI GTCTC 1 cut(s) 876
BfaI CTAG 2 cut(s) 98, 345
BfmI CTRYAG 1 cut(s) 769
BfoI RGCGCY 1 cut(s) 446
BfrI CTTAAG 1 cut(s) 383
BfuAI ACCTGC 1 cut(s) 774
BfuI GTATCC 1 cut(s) 868
BisI GCNGC 7 cut(s) 264, 267, 378, 396, 769, 772, 956
BlsI GCNGC 7 cut(s) 265, 268, 379, 397, 770, 773, 957
Bme1390I CCNGG 1 cut(s) 104
BmgBI CACGTC 1 cut(s) 928
BmrFI CCNGG 1 cut(s) 104
BmsI GCATC 6 cut(s) 16, 157, 212, 278, 479, 977
BpiI GAAGAC 1 cut(s) 930
Bpu10I CCTNAGC 1 cut(s) 647
BpuEI CTTGAG 2 cut(s) 899, 980
BsaJI CCNNGG 2 cut(s) 549, 720
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 103
Bse1I ACTGG 3 cut(s) 135, 399, 522
BseBI CCWGG 1 cut(s) 104
BseDI CCNNGG 2 cut(s) 549, 720
BseGI GGATG 3 cut(s) 39, 172, 818
BseLI CCNNNNNNNGG 2 cut(s) 29, 103
BseMII CTCAG 3 cut(s) 193, 495, 851
BseNI ACTGG 3 cut(s) 135, 399, 522
BseXI GCAGC 5 cut(s) 250, 364, 755, 783, 942
BseYI CCCAGC 1 cut(s) 29
BsgI GTGCAG 1 cut(s) 802
BshFI GGCC 3 cut(s) 107, 499, 932
BsiHKAI GWGCWC 1 cut(s) 246
BslFI GGGAC 1 cut(s) 141
BslI CCNNNNNNNGG 2 cut(s) 29, 103
BsmAI GTCTC 1 cut(s) 876
BsmBI CGTCTC 1 cut(s) 876
BsmFI GGGAC 1 cut(s) 141
BsmI GAATGC 1 cut(s) 185
BsnI GGCC 3 cut(s) 107, 499, 932
Bsp1286I GDGCHC 1 cut(s) 246
BspACI CCGC 4 cut(s) 249, 266, 312, 396
BspANI GGCC 3 cut(s) 107, 499, 932
BspCNI CTCAG 3 cut(s) 192, 496, 850
BspMAI CTGCAG 1 cut(s) 773
BspMI ACCTGC 1 cut(s) 774
BspTI CTTAAG 1 cut(s) 383
BsrI ACTGG 3 cut(s) 135, 399, 522
BssECI CCNNGG 2 cut(s) 549, 720
BssSI CACGAG 1 cut(s) 879
BssT1I CCWWGG 1 cut(s) 720
Bst2BI CACGAG 1 cut(s) 879
Bst2UI CCWGG 1 cut(s) 104
Bst4CI ACNGT 3 cut(s) 45, 409, 985
Bst6I CTCTTC 1 cut(s) 281
BstAFI CTTAAG 1 cut(s) 383
BstAPI GCANNNNNTGC 2 cut(s) 209, 780
BstC8I GCNNGC 2 cut(s) 226, 312
BstDEI CTNAG 5 cut(s) 179, 504, 642, 647, 837
BstENI CCTNNNNNAGG 1 cut(s) 101
BstF5I GGATG 3 cut(s) 39, 172, 818
BstH2I RGCGCY 1 cut(s) 446
BstHHI GCGC 2 cut(s) 185, 445
BstMAI GTCTC 1 cut(s) 876
BstMWI GCNNNNNNNGC 3 cut(s) 209, 225, 780
BstNI CCWGG 1 cut(s) 104
BstNSI RCATGY 1 cut(s) 529
BstSCI CCNGG 1 cut(s) 102
BstSFI CTRYAG 1 cut(s) 769
BstV1I GCAGC 5 cut(s) 250, 364, 755, 783, 942
BstV2I GAAGAC 1 cut(s) 930
BstXI CCANNNNNNTGG 1 cut(s) 507
BsuI GTATCC 1 cut(s) 868
BsuRI GGCC 3 cut(s) 107, 499, 932
BtrI CACGTC 1 cut(s) 928
BtsCI GGATG 3 cut(s) 39, 172, 818
BtsIMutI CAGTG 1 cut(s) 406
BveI ACCTGC 1 cut(s) 774
Cac8I GCNNGC 2 cut(s) 226, 312
CaiI CAGNNNCTG 1 cut(s) 29
CfoI GCGC 2 cut(s) 185, 445
CseI GACGC 1 cut(s) 159
Csp6I GTAC 1 cut(s) 515
CviAII CATG 6 cut(s) 82, 236, 463, 526, 828, 844
CviQI GTAC 1 cut(s) 515
DdeI CTNAG 5 cut(s) 179, 504, 642, 647, 837
DraI TTTAAA 2 cut(s) 670, 975
EaeI YGGCCR 1 cut(s) 930
Eam1104I CTCTTC 1 cut(s) 281
EarI CTCTTC 1 cut(s) 281
Ecl136II GAGCTC 1 cut(s) 244
Eco130I CCWWGG 1 cut(s) 720
Eco24I GRGCYC 1 cut(s) 246
Eco53kI GAGCTC 1 cut(s) 244
Eco57I CTGAAG 1 cut(s) 621
EcoICRI GAGCTC 1 cut(s) 244
EcoNI CCTNNNNNAGG 1 cut(s) 101
EcoRII CCWGG 1 cut(s) 102
EcoT14I CCWWGG 1 cut(s) 720
EcoT22I ATGCAT 1 cut(s) 970
EcoT38I GRGCYC 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 720
Esp3I CGTCTC 1 cut(s) 876
FaeI CATG 6 cut(s) 85, 239, 466, 529, 831, 847
FaqI GGGAC 1 cut(s) 141
FatI CATG 6 cut(s) 81, 235, 462, 525, 827, 843
FauI CCCGC 2 cut(s) 256, 319
FblI GTMKAC 1 cut(s) 173
Fnu4HI GCNGC 7 cut(s) 264, 267, 378, 396, 769, 772, 956
FokI GGATG 3 cut(s) 46, 179, 825
FriOI GRGCYC 1 cut(s) 246
Fsp4HI GCNGC 7 cut(s) 264, 267, 378, 396, 769, 772, 956
FspBI CTAG 2 cut(s) 98, 345
GlaI GCGC 2 cut(s) 184, 444
GluI GCNGC 7 cut(s) 264, 267, 378, 396, 769, 772, 956
GsaI CCCAGC 1 cut(s) 33
HaeII RGCGCY 1 cut(s) 446
HaeIII GGCC 3 cut(s) 107, 499, 932
HgaI GACGC 1 cut(s) 159
HhaI GCGC 2 cut(s) 185, 445
Hin1II CATG 6 cut(s) 85, 239, 466, 529, 831, 847
Hin6I GCGC 2 cut(s) 183, 443
HinP1I GCGC 2 cut(s) 183, 443
HincII GTYRAC 1 cut(s) 523
HindII GTYRAC 1 cut(s) 523
HindIII AAGCTT 2 cut(s) 631, 644
HinfI GANTC 5 cut(s) 65, 141, 835, 856, 910
HpaI GTTAAC 1 cut(s) 523
HphI GGTGA 2 cut(s) 397, 844
Hpy166II GTNNAC 2 cut(s) 174, 523
Hpy188I TCNGA 2 cut(s) 166, 505
Hpy188III TCNNGA 3 cut(s) 739, 853, 907
Hpy8I GTNNAC 2 cut(s) 174, 523
HpyCH4III ACNGT 3 cut(s) 45, 409, 985
HpyCH4IV ACGT 2 cut(s) 561, 927
HpyCH4V TGCA 4 cut(s) 544, 771, 783, 968
HpyF10VI GCNNNNNNNGC 3 cut(s) 209, 225, 780
HpyF3I CTNAG 5 cut(s) 179, 504, 642, 647, 837
HpySE526I ACGT 2 cut(s) 561, 927
Hsp92II CATG 6 cut(s) 85, 239, 466, 529, 831, 847
HspAI GCGC 2 cut(s) 183, 443
KspAI GTTAAC 1 cut(s) 523
LmnI GCTCC 2 cut(s) 249, 952
Lsp1109I GCAGC 5 cut(s) 250, 364, 755, 783, 942
LweI GCATC 6 cut(s) 16, 157, 212, 278, 479, 977
MaeI CTAG 2 cut(s) 98, 345
MaeII ACGT 2 cut(s) 561, 927
MaeIII GTNAC 3 cut(s) 403, 637, 832
MboII GAAGA 5 cut(s) 83, 268, 665, 932, 935
MfeI CAATTG 2 cut(s) 135, 207
MhlI GDGCHC 1 cut(s) 246
MlsI TGGCCA 1 cut(s) 932
MluCI AATT 7 cut(s) 135, 207, 254, 571, 657, 713, 987
MluNI TGGCCA 1 cut(s) 932
MlyI GAGTC 3 cut(s) 150, 829, 904
MmeI TCCRAC 2 cut(s) 77, 144
MnlI CCTC 5 cut(s) 305, 376, 489, 559, 655
Mox20I TGGCCA 1 cut(s) 932
Mph1103I ATGCAT 1 cut(s) 970
MscI TGGCCA 1 cut(s) 932
MseI TTAA 6 cut(s) 192, 384, 522, 669, 693, 974
MslI CAYNNNNRTG 1 cut(s) 505
Msp20I TGGCCA 1 cut(s) 932
MspA1I CMGCKG 1 cut(s) 314
MspCI CTTAAG 1 cut(s) 383
MspR9I CCNGG 1 cut(s) 104
MunI CAATTG 2 cut(s) 135, 207
Mva1269I GAATGC 1 cut(s) 185
MvaI CCWGG 1 cut(s) 104
MwoI GCNNNNNNNGC 3 cut(s) 209, 225, 780
NlaIII CATG 6 cut(s) 85, 239, 466, 529, 831, 847
NmeAIII GCCGAG 1 cut(s) 530
NmuCI GTSAC 2 cut(s) 403, 832
NsiI ATGCAT 1 cut(s) 970
NspI RCATGY 1 cut(s) 529
PctI GAATGC 1 cut(s) 185
PfeI GAWTC 2 cut(s) 65, 856
PflMI CCANNNNNTGG 1 cut(s) 29
PkrI GCNGC 7 cut(s) 265, 268, 379, 397, 770, 773, 957
PleI GAGTC 3 cut(s) 149, 829, 904
PpsI GAGTC 3 cut(s) 149, 829, 904
Psp124BI GAGCTC 1 cut(s) 246
Psp6I CCWGG 1 cut(s) 102
PspFI CCCAGC 1 cut(s) 29
PspGI CCWGG 1 cut(s) 102
PstI CTGCAG 1 cut(s) 773
PstNI CAGNNNCTG 1 cut(s) 29
RsaI GTAC 1 cut(s) 516
RsaNI GTAC 1 cut(s) 515
RseI CAYNNNNRTG 1 cut(s) 505
SacI GAGCTC 1 cut(s) 246
SaqAI TTAA 6 cut(s) 192, 384, 522, 669, 693, 974
SatI GCNGC 7 cut(s) 264, 267, 378, 396, 769, 772, 956
SchI GAGTC 3 cut(s) 150, 829, 904
ScrFI CCNGG 1 cut(s) 104
SduI GDGCHC 1 cut(s) 246
SfaNI GCATC 6 cut(s) 16, 157, 212, 278, 479, 977
SfcI CTRYAG 1 cut(s) 769
SmiMI CAYNNNNRTG 1 cut(s) 505
SmlI CTYRAG 3 cut(s) 383, 914, 959
SmoI CTYRAG 3 cut(s) 383, 914, 959
Sse9I AATT 7 cut(s) 135, 207, 254, 571, 657, 713, 987
SsiI CCGC 4 cut(s) 249, 266, 312, 396
SspI AATATT 2 cut(s) 10, 537
SspMI CTAG 2 cut(s) 98, 345
SstI GAGCTC 1 cut(s) 246
StyD4I CCNGG 1 cut(s) 102
StyI CCWWGG 1 cut(s) 720
TaaI ACNGT 3 cut(s) 45, 409, 985
TaiI ACGT 2 cut(s) 564, 930
TasI AATT 7 cut(s) 135, 207, 254, 571, 657, 713, 987
TatI WGTACW 1 cut(s) 514
TauI GCSGC 2 cut(s) 269, 398
TfiI GAWTC 2 cut(s) 65, 856
Tru1I TTAA 6 cut(s) 192, 384, 522, 669, 693, 974
Tru9I TTAA 6 cut(s) 192, 384, 522, 669, 693, 974
TscAI CASTG 1 cut(s) 406
TseFI GTSAC 2 cut(s) 403, 832
TseI GCWGC 5 cut(s) 263, 377, 768, 771, 955
Tsp45I GTSAC 2 cut(s) 403, 832
TspDTI ATGAA 2 cut(s) 178, 813
TspGWI ACGGA 1 cut(s) 900
TspRI CASTG 1 cut(s) 406
Van91I CCANNNNNTGG 1 cut(s) 29
Vha464I CTTAAG 1 cut(s) 383
XagI CCTNNNNNAGG 1 cut(s) 101
XapI RAATTY 3 cut(s) 254, 571, 713
XceI RCATGY 1 cut(s) 529
XmiI GTMKAC 1 cut(s) 173
XspI CTAG 2 cut(s) 98, 345
Zsp2I ATGCAT 1 cut(s) 970
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.