RchiOBHm_Chr5g0026731

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000200
Physical Location & Seq
Forward (+)
20762507 .. 20763297
791 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30631

Sequence Viewer

Length: 750 bp
ATGGGTTCAGAGGTGAAGGTTGAAATTGTTCACAAAGAAACAATTAGACCATCATCTCCAACTCCTCACCACCTTCGATTTTTTAGCCTCTCCATTTTTGATCAGCTTTCTCCTGAACTATATTTCCCACTACTTTTGTTCTATCCCAACAATAGTGATCATCATGAGGTCAATAATGTTGATCACCAACATTCTCTGGATGGTGAAAGAACCAAGCTTCTGAAAAGATCACTATCCGAAACCCTAACTCGCTTCTACCCCTTTGCCGGAAGAATTTTAAATAATGCTTCAGTCTGTTACCCCTGTTCCTTCATATCAAGGGTTTTGGACAAACATGATCTTGAATTGCTGAAAAAATTGATTCCTTTAGGAGCTACAAAAGGAGACACAGGCTATGATGTTCTACTAGTCCAGATCAACTTCTTTGAATGTGGGGGAATCACAATCGGATTCAATGCTTCGCATAAGATCATTGATGCCCACACACTCAGCACATTCATTAATAGTTGGGCTGCAATTCCTCTTCGCTTTAGTACCAGCGATAATATTGGAGTAGTGGTTCATCAACAACAATATATTGCTGCAGCTTCGCTTTTCCCACCACTGGATTTCTTCAGCTCACCGCCACCTATTGTGGAGTTTGCTATAGAAAAGTGTACAACAAGGAGACTTTTGTTTGAATCCTCGAAGATTTCATGTCTTAAGTCTGAAGCTGTCAGTGCTGCAGTGCAAAATCCTTACCCGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

249

Amino Acids

27.92

Weight (kDa)

6.59

Isoelectric Point (pI)

46.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 6 - 241 1e-29 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 623
AcsI RAATTY 1 cut(s) 273
AcuI CTGAAG 3 cut(s) 273, 598, 729
AfaI GTAC 2 cut(s) 535, 658
AfiI CCNNNNNNNGG 2 cut(s) 266, 604
AflII CTTAAG 1 cut(s) 701
AgsI TTSAA 5 cut(s) 23, 344, 428, 454, 680
AhlI ACTAGT 1 cut(s) 406
AloI GAACNNNNNNTCC 4 cut(s) 108, 140, 543, 575
AluBI AGCT 6 cut(s) 106, 217, 374, 587, 618, 713
AluI AGCT 6 cut(s) 106, 217, 374, 587, 618, 713
Alw26I GTCTC 2 cut(s) 378, 661
Ama87I CYCGRG 1 cut(s) 742
ApeKI GCWGC 4 cut(s) 512, 581, 584, 722
ApoI RAATTY 1 cut(s) 273
AseI ATTAAT 1 cut(s) 501
Asp700I GAANNNNTTC 1 cut(s) 27
AsuHPI GGTGA 5 cut(s) 25, 59, 176, 215, 612
AvaI CYCGRG 1 cut(s) 742
BbvI GCAGC 4 cut(s) 499, 568, 596, 709
BccI CCATC 2 cut(s) 58, 194
BclI TGATCA 3 cut(s) 100, 157, 181
BcoDI GTCTC 2 cut(s) 378, 661
BcuI ACTAGT 1 cut(s) 406
BfaI CTAG 1 cut(s) 407
BfmI CTRYAG 3 cut(s) 582, 645, 723
BfrI CTTAAG 1 cut(s) 701
BisI GCNGC 4 cut(s) 513, 582, 585, 723
BlsI GCNGC 4 cut(s) 514, 583, 586, 724
BmeT110I CYCGRG 1 cut(s) 742
BmsI GCATC 1 cut(s) 466
BsaBI GATNNNNATC 1 cut(s) 232
BsaXI ACNNNNNCTCC 2 cut(s) 543, 573
Bsc4I CCNNNNNNNGG 2 cut(s) 266, 604
Bse1I ACTGG 1 cut(s) 609
Bse8I GATNNNNATC 1 cut(s) 232
BseGI GGATG 1 cut(s) 205
BseJI GATNNNNATC 1 cut(s) 232
BseLI CCNNNNNNNGG 2 cut(s) 266, 604
BseMII CTCAG 1 cut(s) 502
BseNI ACTGG 1 cut(s) 609
BseRI GAGGAG 1 cut(s) 54
BseXI GCAGC 4 cut(s) 499, 568, 596, 709
BsiHKCI CYCGRG 1 cut(s) 742
BsiSI CCGG 1 cut(s) 267
BslI CCNNNNNNNGG 2 cut(s) 266, 604
BsmAI GTCTC 2 cut(s) 378, 661
BsoBI CYCGRG 1 cut(s) 742
Bsp1407I TGTACA 1 cut(s) 656
Bsp143I GATC 7 cut(s) 100, 157, 181, 227, 337, 414, 468
BspACI CCGC 1 cut(s) 623
BspCNI CTCAG 1 cut(s) 501
BspHI TCATGA 1 cut(s) 163
BspMAI CTGCAG 2 cut(s) 586, 727
BspTI CTTAAG 1 cut(s) 701
BsrGI TGTACA 1 cut(s) 656
BsrI ACTGG 1 cut(s) 609
BssMI GATC 7 cut(s) 100, 157, 181, 227, 337, 414, 468
Bst6I CTCTTC 1 cut(s) 528
BstAFI CTTAAG 1 cut(s) 701
BstAUI TGTACA 1 cut(s) 656
BstDEI CTNAG 1 cut(s) 488
BstF5I GGATG 1 cut(s) 205
BstKTI GATC 7 cut(s) 103, 160, 184, 230, 340, 417, 471
BstMAI GTCTC 2 cut(s) 378, 661
BstMBI GATC 7 cut(s) 100, 157, 181, 227, 337, 414, 468
BstMWI GCNNNNNNNGC 1 cut(s) 719
BstSFI CTRYAG 3 cut(s) 582, 645, 723
BstV1I GCAGC 4 cut(s) 499, 568, 596, 709
BtsCI GGATG 1 cut(s) 205
BtsI GCAGTG 1 cut(s) 732
BtsIMutI CAGTG 3 cut(s) 602, 724, 732
CciI TCATGA 1 cut(s) 163
Csp6I GTAC 2 cut(s) 534, 657
CspCI CAANNNNNGTGG 2 cut(s) 117, 152
CviAII CATG 3 cut(s) 164, 335, 696
CviJI RGCY 9 cut(s) 87, 106, 217, 374, 393, 512, 587, 618, 713
CviKI_1 RGCY 9 cut(s) 87, 106, 217, 374, 393, 512, 587, 618, 713
CviQI GTAC 2 cut(s) 534, 657
DdeI CTNAG 1 cut(s) 488
DpnI GATC 7 cut(s) 102, 159, 183, 229, 339, 416, 470
DpnII GATC 7 cut(s) 100, 157, 181, 227, 337, 414, 468
DraI TTTAAA 1 cut(s) 279
Eam1104I CTCTTC 1 cut(s) 528
EarI CTCTTC 1 cut(s) 528
Eco57I CTGAAG 3 cut(s) 273, 598, 729
Eco88I CYCGRG 1 cut(s) 742
FaeI CATG 3 cut(s) 167, 338, 699
FaiI YATR 9 cut(s) 121, 165, 314, 336, 396, 465, 576, 647, 697
FatI CATG 3 cut(s) 163, 334, 695
FbaI TGATCA 3 cut(s) 100, 157, 181
Fnu4HI GCNGC 4 cut(s) 513, 582, 585, 723
FokI GGATG 1 cut(s) 212
Fsp4HI GCNGC 4 cut(s) 513, 582, 585, 723
FspBI CTAG 1 cut(s) 407
GluI GCNGC 4 cut(s) 513, 582, 585, 723
HapII CCGG 1 cut(s) 267
Hin1II CATG 3 cut(s) 167, 338, 699
HindIII AAGCTT 1 cut(s) 215
HinfI GANTC 4 cut(s) 361, 438, 450, 680
HpaII CCGG 1 cut(s) 267
HphI GGTGA 5 cut(s) 25, 59, 176, 215, 612
Hpy166II GTNNAC 2 cut(s) 31, 657
Hpy188I TCNGA 5 cut(s) 10, 222, 238, 449, 709
Hpy188III TCNNGA 5 cut(s) 113, 164, 197, 341, 412
Hpy8I GTNNAC 2 cut(s) 31, 657
HpyAV CCTTC 3 cut(s) 10, 83, 319
HpyCH4V TGCA 4 cut(s) 515, 584, 725, 730
HpyF10VI GCNNNNNNNGC 1 cut(s) 719
HpyF3I CTNAG 1 cut(s) 488
Hsp92II CATG 3 cut(s) 167, 338, 699
Ksp22I TGATCA 3 cut(s) 100, 157, 181
Kzo9I GATC 7 cut(s) 100, 157, 181, 227, 337, 414, 468
LmnI GCTCC 1 cut(s) 371
LpnPI CCDG 8 cut(s) 126, 182, 280, 316, 375, 425, 550, 590
Lsp1109I GCAGC 4 cut(s) 499, 568, 596, 709
LweI GCATC 1 cut(s) 466
MaeI CTAG 1 cut(s) 407
MaeIII GTNAC 1 cut(s) 296
MalI GATC 7 cut(s) 102, 159, 183, 229, 339, 416, 470
MboI GATC 7 cut(s) 100, 157, 181, 227, 337, 414, 468
MboII GAAGA 4 cut(s) 282, 515, 604, 700
MluCI AATT 6 cut(s) 24, 42, 273, 344, 356, 516
MmeI TCCRAC 1 cut(s) 83
MnlI CCTC 6 cut(s) 4, 75, 98, 160, 531, 694
MroXI GAANNNNTTC 1 cut(s) 27
MseI TTAA 3 cut(s) 278, 501, 702
MspCI CTTAAG 1 cut(s) 701
MspI CCGG 1 cut(s) 267
MwoI GCNNNNNNNGC 1 cut(s) 719
NdeII GATC 7 cut(s) 100, 157, 181, 227, 337, 414, 468
NlaIII CATG 3 cut(s) 167, 338, 699
PagI TCATGA 1 cut(s) 163
PdmI GAANNNNTTC 1 cut(s) 27
PfeI GAWTC 4 cut(s) 361, 438, 450, 680
PkrI GCNGC 4 cut(s) 514, 583, 586, 724
PshBI ATTAAT 1 cut(s) 501
PstI CTGCAG 2 cut(s) 586, 727
RsaI GTAC 2 cut(s) 535, 658
RsaNI GTAC 2 cut(s) 534, 657
SaqAI TTAA 3 cut(s) 278, 501, 702
SatI GCNGC 4 cut(s) 513, 582, 585, 723
Sau3AI GATC 7 cut(s) 100, 157, 181, 227, 337, 414, 468
SfaNI GCATC 1 cut(s) 466
SfcI CTRYAG 3 cut(s) 582, 645, 723
SmlI CTYRAG 1 cut(s) 701
SmoI CTYRAG 1 cut(s) 701
SpeI ACTAGT 1 cut(s) 406
Sse9I AATT 6 cut(s) 24, 42, 273, 344, 356, 516
SsiI CCGC 1 cut(s) 623
SspI AATATT 1 cut(s) 547
SspMI CTAG 1 cut(s) 407
TaqI TCGA 2 cut(s) 76, 686
TasI AATT 6 cut(s) 24, 42, 273, 344, 356, 516
TatI WGTACW 1 cut(s) 656
TfiI GAWTC 4 cut(s) 361, 438, 450, 680
Tru1I TTAA 3 cut(s) 278, 501, 702
Tru9I TTAA 3 cut(s) 278, 501, 702
TscAI CASTG 3 cut(s) 609, 724, 732
TseI GCWGC 4 cut(s) 512, 581, 584, 722
TspDTI ATGAA 4 cut(s) 301, 487, 551, 684
TspRI CASTG 3 cut(s) 609, 724, 732
Vha464I CTTAAG 1 cut(s) 701
VspI ATTAAT 1 cut(s) 501
XapI RAATTY 1 cut(s) 273
XmnI GAANNNNTTC 1 cut(s) 27
XspI CTAG 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.