RLG00000032956

BAHD acyltransferase At5g47980-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
21369134 .. 21369905
772 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032956

Sequence Viewer

Length: 669 bp
ATGGGCTCAGAGGTGAAGGTTGAAGTTGTTCACAAAGAAACAATTAGACCATCATCTCCAACTCCTCACCACCTTCGATTTTTCAGCCTCTCCATTTTTGATCAGCTTTCTCCTGAACTATATTTCCCCCTACTTTTGTTCTATCCCAACAATAGAAGAATTTTAAATAATGCTTCAGTCTGTTGCAATGACCAAGGAGTTACGTTTCTTGAAGCTCAAGTTACCTGTTCCATATCAAGGGTTTTGGACAAACCTGATCTTGAGTTGCAGAAAAAATTGATTCCTTTAGGAGCTACAAAGGGAGACACAGGCTATGATGTTCTACTAGTCCAGATCAACTTCTTTGAATGTGGTGGAATCACAATCGGATTCAATGCTTCGCATAAGATCATTGATGCCCACACACACAGCACATTCATCAATAGTTGGGCTGCAATTTCTCTTCGCTTTAGTACCAGTGACAATATTGCAGTAGTGGTTCATCAACAACAATATATTGCTACAGCTTCTCTTTTCCCACCACTGGATTTCTTCAGCTCACCTCCACCTATTGTGGAGTTTGCTATAGAAAAGTGTACAACAAGGAGATTTTTGTTTGAATCCTCGAAGATTTCATGTCTTAAGTCTGAAGCTGTCAGTGCTGCAGTGCAAAATCCTTACCCGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

223

Amino Acids

24.71

Weight (kDa)

6.37

Isoelectric Point (pI)

48.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 6 - 55 2.3e-06 Transferase family
Transferase PF02458 58 - 218 2.4e-22 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 159
AcuI CTGAAG 3 cut(s) 159, 517, 648
AfaI GTAC 2 cut(s) 454, 577
AfiI CCNNNNNNNGG 2 cut(s) 237, 523
AflII CTTAAG 1 cut(s) 620
AgsI TTSAA 5 cut(s) 23, 212, 347, 373, 599
AhlI ACTAGT 1 cut(s) 325
AloI GAACNNNNNNTCC 2 cut(s) 108, 140
AluBI AGCT 6 cut(s) 106, 215, 293, 506, 537, 632
AluI AGCT 6 cut(s) 106, 215, 293, 506, 537, 632
Alw26I GTCTC 1 cut(s) 297
Ama87I CYCGRG 1 cut(s) 661
ApeKI GCWGC 2 cut(s) 431, 641
ApoI RAATTY 1 cut(s) 159
Asp700I GAANNNNTTC 1 cut(s) 27
AsuHPI GGTGA 3 cut(s) 25, 59, 531
AvaI CYCGRG 1 cut(s) 661
BanII GRGCYC 1 cut(s) 8
BbvI GCAGC 2 cut(s) 418, 628
BccI CCATC 1 cut(s) 58
BclI TGATCA 1 cut(s) 100
BcoDI GTCTC 1 cut(s) 297
BcuI ACTAGT 1 cut(s) 325
BfaI CTAG 1 cut(s) 326
BfmI CTRYAG 3 cut(s) 501, 564, 642
BfrI CTTAAG 1 cut(s) 620
BisI GCNGC 2 cut(s) 432, 642
BlsI GCNGC 2 cut(s) 433, 643
BmeT110I CYCGRG 1 cut(s) 661
BmsI GCATC 1 cut(s) 385
BpuEI CTTGAG 2 cut(s) 201, 281
BsaJI CCNNGG 1 cut(s) 193
Bsc4I CCNNNNNNNGG 2 cut(s) 237, 523
Bse1I ACTGG 2 cut(s) 456, 528
Bse3DI GCAATG 1 cut(s) 193
BseDI CCNNGG 1 cut(s) 193
BseLI CCNNNNNNNGG 2 cut(s) 237, 523
BseMI GCAATG 1 cut(s) 193
BseMII CTCAG 1 cut(s) 21
BseNI ACTGG 2 cut(s) 456, 528
BseRI GAGGAG 1 cut(s) 54
BseXI GCAGC 2 cut(s) 418, 628
BsiHKCI CYCGRG 1 cut(s) 661
BslI CCNNNNNNNGG 2 cut(s) 237, 523
BsmAI GTCTC 1 cut(s) 297
BsoBI CYCGRG 1 cut(s) 661
Bsp1286I GDGCHC 1 cut(s) 8
Bsp1407I TGTACA 1 cut(s) 575
Bsp143I GATC 4 cut(s) 100, 256, 333, 387
BspCNI CTCAG 1 cut(s) 20
BspMAI CTGCAG 1 cut(s) 646
BspTI CTTAAG 1 cut(s) 620
BsrDI GCAATG 1 cut(s) 193
BsrGI TGTACA 1 cut(s) 575
BsrI ACTGG 2 cut(s) 456, 528
BssECI CCNNGG 1 cut(s) 193
BssMI GATC 4 cut(s) 100, 256, 333, 387
BssT1I CCWWGG 1 cut(s) 193
Bst6I CTCTTC 1 cut(s) 447
BstAFI CTTAAG 1 cut(s) 620
BstAUI TGTACA 1 cut(s) 575
BstDEI CTNAG 1 cut(s) 7
BstKTI GATC 4 cut(s) 103, 259, 336, 390
BstMAI GTCTC 1 cut(s) 297
BstMBI GATC 4 cut(s) 100, 256, 333, 387
BstMWI GCNNNNNNNGC 1 cut(s) 638
BstSFI CTRYAG 3 cut(s) 501, 564, 642
BstV1I GCAGC 2 cut(s) 418, 628
BtsI GCAGTG 1 cut(s) 651
BtsIMutI CAGTG 4 cut(s) 463, 521, 643, 651
Csp6I GTAC 2 cut(s) 453, 576
CviAII CATG 1 cut(s) 615
CviQI GTAC 2 cut(s) 453, 576
DdeI CTNAG 1 cut(s) 7
DpnI GATC 4 cut(s) 102, 258, 335, 389
DpnII GATC 4 cut(s) 100, 256, 333, 387
DraI TTTAAA 1 cut(s) 165
Eam1104I CTCTTC 1 cut(s) 447
EarI CTCTTC 1 cut(s) 447
Eco130I CCWWGG 1 cut(s) 193
Eco24I GRGCYC 1 cut(s) 8
Eco57I CTGAAG 3 cut(s) 159, 517, 648
Eco88I CYCGRG 1 cut(s) 661
EcoT14I CCWWGG 1 cut(s) 193
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 193
FaeI CATG 1 cut(s) 618
FaiI YATR 7 cut(s) 121, 233, 315, 384, 495, 566, 616
FatI CATG 1 cut(s) 614
FbaI TGATCA 1 cut(s) 100
Fnu4HI GCNGC 2 cut(s) 432, 642
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 2 cut(s) 432, 642
FspBI CTAG 1 cut(s) 326
GluI GCNGC 2 cut(s) 432, 642
Hin1II CATG 1 cut(s) 618
HinfI GANTC 4 cut(s) 280, 357, 369, 599
HphI GGTGA 3 cut(s) 25, 59, 531
Hpy166II GTNNAC 2 cut(s) 31, 576
Hpy188I TCNGA 3 cut(s) 10, 368, 628
Hpy188III TCNNGA 4 cut(s) 113, 209, 260, 331
Hpy8I GTNNAC 2 cut(s) 31, 576
HpyAV CCTTC 2 cut(s) 10, 83
HpyCH4IV ACGT 1 cut(s) 203
HpyCH4V TGCA 6 cut(s) 186, 268, 434, 470, 644, 649
HpyF10VI GCNNNNNNNGC 1 cut(s) 638
HpyF3I CTNAG 1 cut(s) 7
HpySE526I ACGT 1 cut(s) 203
Hsp92II CATG 1 cut(s) 618
Ksp22I TGATCA 1 cut(s) 100
Kzo9I GATC 4 cut(s) 100, 256, 333, 387
LmnI GCTCC 1 cut(s) 290
LpnPI CCDG 7 cut(s) 126, 238, 267, 294, 344, 469, 509
Lsp1109I GCAGC 2 cut(s) 418, 628
LweI GCATC 1 cut(s) 385
MaeI CTAG 1 cut(s) 326
MaeII ACGT 1 cut(s) 203
MaeIII GTNAC 3 cut(s) 199, 220, 458
MalI GATC 4 cut(s) 102, 258, 335, 389
MboI GATC 4 cut(s) 100, 256, 333, 387
MboII GAAGA 4 cut(s) 168, 434, 523, 619
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 4 cut(s) 42, 159, 275, 435
MmeI TCCRAC 1 cut(s) 83
MnlI CCTC 5 cut(s) 4, 75, 98, 552, 613
MroXI GAANNNNTTC 1 cut(s) 27
MseI TTAA 2 cut(s) 164, 621
MspCI CTTAAG 1 cut(s) 620
MwoI GCNNNNNNNGC 1 cut(s) 638
NdeII GATC 4 cut(s) 100, 256, 333, 387
NlaIII CATG 1 cut(s) 618
NmuCI GTSAC 1 cut(s) 458
PdmI GAANNNNTTC 1 cut(s) 27
PfeI GAWTC 4 cut(s) 280, 357, 369, 599
PkrI GCNGC 2 cut(s) 433, 643
PstI CTGCAG 1 cut(s) 646
RsaI GTAC 2 cut(s) 454, 577
RsaNI GTAC 2 cut(s) 453, 576
SaqAI TTAA 2 cut(s) 164, 621
SatI GCNGC 2 cut(s) 432, 642
Sau3AI GATC 4 cut(s) 100, 256, 333, 387
SduI GDGCHC 1 cut(s) 8
SfaNI GCATC 1 cut(s) 385
SfcI CTRYAG 3 cut(s) 501, 564, 642
SmlI CTYRAG 3 cut(s) 216, 260, 620
SmoI CTYRAG 3 cut(s) 216, 260, 620
SpeI ACTAGT 1 cut(s) 325
Sse9I AATT 4 cut(s) 42, 159, 275, 435
SspI AATATT 1 cut(s) 466
SspMI CTAG 1 cut(s) 326
StyI CCWWGG 1 cut(s) 193
TaiI ACGT 1 cut(s) 206
TaqI TCGA 2 cut(s) 76, 605
TasI AATT 4 cut(s) 42, 159, 275, 435
TatI WGTACW 1 cut(s) 575
TfiI GAWTC 4 cut(s) 280, 357, 369, 599
Tru1I TTAA 2 cut(s) 164, 621
Tru9I TTAA 2 cut(s) 164, 621
TscAI CASTG 4 cut(s) 463, 528, 643, 651
TseFI GTSAC 1 cut(s) 458
TseI GCWGC 2 cut(s) 431, 641
Tsp45I GTSAC 1 cut(s) 458
TspDTI ATGAA 3 cut(s) 406, 470, 603
TspRI CASTG 4 cut(s) 463, 528, 643, 651
Vha464I CTTAAG 1 cut(s) 620
XapI RAATTY 1 cut(s) 159
XmnI GAANNNNTTC 1 cut(s) 27
XspI CTAG 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.