Rh4DG194100

BAHD acyltransferase At5g47980-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Reverse (-)
38036278 .. 38036649
372 bp
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UTR
Exon/CDS
Intron
Rh4DG194100.1

Sequence Viewer

Length: 372 bp
ATGAGGGTTGAAGTGATCGACAAGGAAACAATTACACCATCATCCCCTACTCCTCACCACCTTACAACTTCCAACCTCTCTGTTTTTGATCAGTTTGTACCTGACTTGTTTGTCCCCATACTTCTCTTCTATCCCAACAATAGTACTACTAATCACAAGGGCAATACTGTTGATCACCACTACTCATTCATTACCGAAAGATCCAAGCTTTTGAAAATTTCATTATCTGAAGCCCTCAGCCGCTTCTATCCCTTCGCAGGAAGAATATTTAGCCACAACAACATTCTTTCAATTTGTTGCAATGACCATGGTGCGGCATTTATCCAAACCCGTGTCAACTGTCCCATATCAAATATTTTGGAAAAGCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

123

Amino Acids

13.93

Weight (kDa)

7.05

Isoelectric Point (pI)

47.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 1 - 120 4.8e-21 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 110
AciI CCGC 2 cut(s) 241, 314
AclWI GGATC 1 cut(s) 195
AcsI RAATTY 1 cut(s) 216
AcuI CTGAAG 1 cut(s) 249
AfaI GTAC 2 cut(s) 99, 145
AfiI CCNNNNNNNGG 2 cut(s) 257, 313
AgsI TTSAA 3 cut(s) 11, 214, 291
AluBI AGCT 1 cut(s) 208
AluI AGCT 1 cut(s) 208
AlwI GGATC 1 cut(s) 195
ApoI RAATTY 1 cut(s) 216
AsuHPI GGTGA 2 cut(s) 47, 167
BbvCI CCTCAGC 1 cut(s) 236
BccI CCATC 1 cut(s) 46
BclI TGATCA 2 cut(s) 88, 172
BfaI CTAG 1 cut(s) 370
BisI GCNGC 2 cut(s) 241, 315
BlsI GCNGC 2 cut(s) 242, 316
BmcAI AGTACT 1 cut(s) 145
Bpu10I CCTNAGC 1 cut(s) 236
BsaJI CCNNGG 1 cut(s) 307
Bsc4I CCNNNNNNNGG 2 cut(s) 257, 313
Bse3DI GCAATG 1 cut(s) 307
BseDI CCNNGG 1 cut(s) 307
BseGI GGATG 1 cut(s) 41
BseLI CCNNNNNNNGG 2 cut(s) 257, 313
BseMI GCAATG 1 cut(s) 307
BseMII CTCAG 1 cut(s) 250
BseRI GAGGAG 1 cut(s) 42
BslFI GGGAC 2 cut(s) 98, 327
BslI CCNNNNNNNGG 2 cut(s) 257, 313
BsmFI GGGAC 2 cut(s) 98, 327
Bsp143I GATC 4 cut(s) 15, 88, 172, 200
Bsp19I CCATGG 1 cut(s) 307
BspACI CCGC 2 cut(s) 241, 314
BspCNI CTCAG 1 cut(s) 249
BspPI GGATC 1 cut(s) 195
BsrDI GCAATG 1 cut(s) 307
BssECI CCNNGG 1 cut(s) 307
BssMI GATC 4 cut(s) 15, 88, 172, 200
BssT1I CCWWGG 1 cut(s) 307
Bst4CI ACNGT 2 cut(s) 169, 341
Bst6I CTCTTC 1 cut(s) 131
BstDEI CTNAG 1 cut(s) 236
BstDSI CCRYGG 1 cut(s) 307
BstF5I GGATG 1 cut(s) 41
BstKTI GATC 4 cut(s) 18, 91, 175, 203
BstMBI GATC 4 cut(s) 15, 88, 172, 200
BstX2I RGATCY 1 cut(s) 200
BstYI RGATCY 1 cut(s) 200
BtgI CCRYGG 1 cut(s) 307
BtsCI GGATG 1 cut(s) 41
Csp6I GTAC 2 cut(s) 98, 144
CviAII CATG 1 cut(s) 308
CviJI RGCY 5 cut(s) 208, 233, 240, 273, 367
CviKI_1 RGCY 5 cut(s) 208, 233, 240, 273, 367
CviQI GTAC 2 cut(s) 98, 144
DdeI CTNAG 1 cut(s) 236
DpnI GATC 4 cut(s) 17, 90, 174, 202
DpnII GATC 4 cut(s) 15, 88, 172, 200
DrdI GACNNNNNNGTC 1 cut(s) 110
DseDI GACNNNNNNGTC 1 cut(s) 110
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
Eco130I CCWWGG 1 cut(s) 307
Eco57I CTGAAG 1 cut(s) 249
EcoT14I CCWWGG 1 cut(s) 307
ErhI CCWWGG 1 cut(s) 307
FaeI CATG 1 cut(s) 311
FaiI YATR 3 cut(s) 119, 309, 347
FaqI GGGAC 2 cut(s) 98, 327
FatI CATG 1 cut(s) 307
FbaI TGATCA 2 cut(s) 88, 172
Fnu4HI GCNGC 2 cut(s) 241, 315
FokI GGATG 1 cut(s) 28
Fsp4HI GCNGC 2 cut(s) 241, 315
FspBI CTAG 1 cut(s) 370
GluI GCNGC 2 cut(s) 241, 315
Hin1II CATG 1 cut(s) 311
HincII GTYRAC 1 cut(s) 337
HindII GTYRAC 1 cut(s) 337
HindIII AAGCTT 1 cut(s) 206
HphI GGTGA 2 cut(s) 47, 167
Hpy166II GTNNAC 1 cut(s) 337
Hpy188I TCNGA 1 cut(s) 229
Hpy8I GTNNAC 1 cut(s) 337
HpyAV CCTTC 1 cut(s) 262
HpyCH4III ACNGT 2 cut(s) 169, 341
HpyCH4V TGCA 1 cut(s) 300
HpyF3I CTNAG 1 cut(s) 236
Hsp92II CATG 1 cut(s) 311
Ksp22I TGATCA 2 cut(s) 88, 172
Kzo9I GATC 4 cut(s) 15, 88, 172, 200
LpnPI CCDG 2 cut(s) 114, 243
MaeI CTAG 1 cut(s) 370
MalI GATC 4 cut(s) 17, 90, 174, 202
MboI GATC 4 cut(s) 15, 88, 172, 200
MboII GAAGA 2 cut(s) 118, 273
MflI RGATCY 1 cut(s) 200
MluCI AATT 3 cut(s) 30, 216, 291
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 3 cut(s) 63, 86, 245
NcoI CCATGG 1 cut(s) 307
NdeII GATC 4 cut(s) 15, 88, 172, 200
NlaIII CATG 1 cut(s) 311
PkrI GCNGC 2 cut(s) 242, 316
PsuI RGATCY 1 cut(s) 200
RsaI GTAC 2 cut(s) 99, 145
RsaNI GTAC 2 cut(s) 98, 144
SatI GCNGC 2 cut(s) 241, 315
Sau3AI GATC 4 cut(s) 15, 88, 172, 200
ScaI AGTACT 1 cut(s) 145
SetI ASST 4 cut(s) 63, 78, 103, 210
SgeI CNNG 9 cut(s) 34, 113, 118, 169, 217, 270, 320, 342, 344
Sse9I AATT 3 cut(s) 30, 216, 291
SsiI CCGC 2 cut(s) 241, 314
SspI AATATT 2 cut(s) 267, 355
SspMI CTAG 1 cut(s) 370
StyI CCWWGG 1 cut(s) 307
TaaI ACNGT 2 cut(s) 169, 341
TaqI TCGA 1 cut(s) 18
TasI AATT 3 cut(s) 30, 216, 291
TatI WGTACW 1 cut(s) 143
TauI GCSGC 2 cut(s) 243, 317
TspDTI ATGAA 2 cut(s) 178, 210
XapI RAATTY 1 cut(s) 216
XspI CTAG 1 cut(s) 370
ZrmI AGTACT 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.