Rw4G016700

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000200
Physical Location & Seq
Reverse (-)
37970353 .. 37971687
1335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G016700.1

Sequence Viewer

Length: 1302 bp
ATGTGTTCAGAAATGAGGGTTGAAGTGATCAACAAGGAAACAATTACACCATCATCTCCTACTCCTCACCACCTTACAACTTCCAACCTCTCTGTTCTTGATCAGTTTTTACCGGACTTGTATGTCCCCCTACTTCTTTTCTATCCCAACAATAGTACTACTAATCACAAGGACAATACGGTTGATCACCACTCATTGATTACCGAAAGATCCAAGCTTATGAAAACTTCATTATCTGAAGCCCTCAGCCTCTTCTATCCTTTCGCAGGAAGAATATTTAGCCACAACAACATTCTTTCAATCTGTTGCAATGACCATGGTGCAGCATTTATCCAAACCCGTGTCAACTGTCCCATATCAAATGTTTTGGAAAAGCCCCATGATGGGATAGTAAATCAATTACTTCCAAATCGCATAGAATCAACATTTGAAAGCACAGGCTATCTCCTACTAGTCCAAGCCAACTTTTTTGAATGTGGTGGACTTGCAATTGGGGTTAGCATTTCACATAAGATCGCAGACGCCTTCACACTCGGAACATTCATCTGTAGCTGGGCAGCAATGAGCCTTGACACTGATGTAGTGGCTTTTCCAACTATAGAATTTGGTGTTGCAGCATCTGTTTACCCACCACAAGATTTATTTATCAAGTCATTGCAAACTTCTGGGGAATATTTTTATGGAGATTGTGTAAAAAGGAGATTTGTTTTTTATGCCTCAAATATTCTACGTCTCAAGTCAAAAGCCGCCAGTGCCATCGTTCCAAATCCAACTCGTGTTGAAGTAGTGACAGCTCTTATTTGGAAATGTGCAATGGACGCATCAAGATCAAACTTGGGTTTTACAATGCCAGCCATGCTGTTTCTAACAGCAAACATGCGGAAAGTATTGGGGCATCCCACTTTAATGGGAAATCTTTTAGGATATGTCTCTGCAGCAAAGGCACAAGAAAGTGATGCAACTCTTCAAAGCTTGGTTGCTATACTACGGGAAGGCATTGAGAAATTTAAAGTGAAATATGGTAATGGAGTTAGCAGAGATGATATCTACCAACATTTCAAAGAGCATGAAGATTTAATGGGTAAGAATGATATAAATAACTATACTTGTACCAGTTGGTGCAGGTTTGGCTTCTACGAAGCCAATTTTGGATGGGGAAAGCCATCATGGGTCACTATTCCAGGTGTCCCAATCAAGAATCTAATTTTATTGATTGATACAAAAGATGAAGACGACATGGCTATAATTGAAACCGATAAGGAGTTGCTTGCATATGCATCTCTAAATCCTATTGTTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00073 ko00940 ko00941 ko00945 ko01100 ko01110 map00073 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

433

Amino Acids

48.17

Weight (kDa)

5.95

Isoelectric Point (pI)

38.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 5 - 413 1.5e-72 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 122
Acc36I ACCTGC 1 cut(s) 1113
AciI CCGC 2 cut(s) 747, 880
AclWI GGATC 1 cut(s) 204
AcsI RAATTY 2 cut(s) 602, 1004
AcuI CTGAAG 1 cut(s) 258
AcyI GRCGYC 1 cut(s) 522
AfaI GTAC 2 cut(s) 157, 1111
AfiI CCNNNNNNNGG 3 cut(s) 266, 383, 384
AgsI TTSAA 8 cut(s) 23, 300, 431, 473, 782, 968, 1060, 1250
AhlI ACTAGT 1 cut(s) 451
AjnI CCWGG 1 cut(s) 1180
AjuI GAANNNNNNNTTGG 2 cut(s) 1131, 1163
AluBI AGCT 4 cut(s) 217, 552, 794, 972
AluI AGCT 4 cut(s) 217, 552, 794, 972
Alw26I GTCTC 2 cut(s) 737, 934
AlwI GGATC 1 cut(s) 204
AlwNI CAGNNNCTG 1 cut(s) 620
ApeKI GCWGC 4 cut(s) 323, 557, 614, 935
ApoI RAATTY 2 cut(s) 602, 1004
AsuHPI GGTGA 2 cut(s) 59, 179
BauI CACGAG 1 cut(s) 774
BbsI GAAGAC 1 cut(s) 1236
BbvCI CCTCAGC 1 cut(s) 245
BbvI GCAGC 4 cut(s) 335, 569, 626, 947
BccI CCATC 5 cut(s) 58, 377, 764, 1146, 1171
BciT130I CCWGG 1 cut(s) 1182
BclI TGATCA 3 cut(s) 27, 100, 184
BcoDI GTCTC 2 cut(s) 737, 934
BcuI ACTAGT 1 cut(s) 451
BfaI CTAG 1 cut(s) 452
BfmI CTRYAG 3 cut(s) 547, 597, 933
BfuAI ACCTGC 1 cut(s) 1113
BisI GCNGC 5 cut(s) 324, 558, 615, 747, 936
BlsI GCNGC 5 cut(s) 325, 559, 616, 748, 937
BmcAI AGTACT 1 cut(s) 157
Bme1390I CCNGG 1 cut(s) 1182
BmrFI CCNGG 1 cut(s) 1182
BmsI GCATC 5 cut(s) 626, 830, 904, 946, 1286
BpiI GAAGAC 1 cut(s) 1236
Bpu10I CCTNAGC 1 cut(s) 245
BpuEI CTTGAG 1 cut(s) 719
BsaHI GRCGYC 1 cut(s) 522
BsaJI CCNNGG 1 cut(s) 316
BsaWI WCCGGW 1 cut(s) 112
BsaXI ACNNNNNCTCC 2 cut(s) 675, 705
Bsc4I CCNNNNNNNGG 3 cut(s) 266, 383, 384
Bse1I ACTGG 2 cut(s) 750, 1113
Bse3DI GCAATG 4 cut(s) 316, 567, 653, 819
BseBI CCWGG 1 cut(s) 1182
BseDI CCNNGG 1 cut(s) 316
BseGI GGATG 2 cut(s) 895, 1157
BseLI CCNNNNNNNGG 3 cut(s) 266, 383, 384
BseMI GCAATG 4 cut(s) 316, 567, 653, 819
BseMII CTCAG 1 cut(s) 259
BseNI ACTGG 2 cut(s) 750, 1113
BseRI GAGGAG 1 cut(s) 54
BseXI GCAGC 4 cut(s) 335, 569, 626, 947
BseYI CCCAGC 1 cut(s) 552
BsgI GTGCAG 2 cut(s) 342, 1141
BsiSI CCGG 1 cut(s) 113
BslFI GGGAC 3 cut(s) 110, 336, 1172
BslI CCNNNNNNNGG 3 cut(s) 266, 383, 384
BsmAI GTCTC 2 cut(s) 737, 934
BsmBI CGTCTC 1 cut(s) 737
BsmFI GGGAC 3 cut(s) 110, 336, 1172
Bsp143I GATC 6 cut(s) 27, 100, 184, 209, 513, 827
Bsp19I CCATGG 1 cut(s) 316
BspACI CCGC 2 cut(s) 747, 880
BspCNI CTCAG 1 cut(s) 258
BspMAI CTGCAG 1 cut(s) 937
BspMI ACCTGC 1 cut(s) 1113
BspPI GGATC 1 cut(s) 204
BsrDI GCAATG 4 cut(s) 316, 567, 653, 819
BsrI ACTGG 2 cut(s) 750, 1113
BssECI CCNNGG 1 cut(s) 316
BssMI GATC 6 cut(s) 27, 100, 184, 209, 513, 827
BssNI GRCGYC 1 cut(s) 522
BssSI CACGAG 1 cut(s) 774
BssT1I CCWWGG 1 cut(s) 316
Bst2BI CACGAG 1 cut(s) 774
Bst2UI CCWGG 1 cut(s) 1182
Bst4CI ACNGT 2 cut(s) 181, 350
Bst6I CTCTTC 2 cut(s) 257, 969
BstACI GRCGYC 1 cut(s) 522
BstC8I GCNNGC 2 cut(s) 852, 1269
BstDEI CTNAG 1 cut(s) 245
BstDSI CCRYGG 1 cut(s) 316
BstENI CCTNNNNNAGG 1 cut(s) 264
BstF5I GGATG 2 cut(s) 895, 1157
BstKTI GATC 6 cut(s) 30, 103, 187, 212, 516, 830
BstMAI GTCTC 2 cut(s) 737, 934
BstMBI GATC 6 cut(s) 27, 100, 184, 209, 513, 827
BstMWI GCNNNNNNNGC 5 cut(s) 752, 818, 856, 941, 1128
BstNI CCWGG 1 cut(s) 1182
BstNSI RCATGY 1 cut(s) 880
BstSCI CCNGG 1 cut(s) 1180
BstSFI CTRYAG 3 cut(s) 547, 597, 933
BstV1I GCAGC 4 cut(s) 335, 569, 626, 947
BstV2I GAAGAC 1 cut(s) 1236
BstX2I RGATCY 1 cut(s) 209
BstXI CCANNNNNNTGG 1 cut(s) 907
BstYI RGATCY 1 cut(s) 209
BtgI CCRYGG 1 cut(s) 316
BtsCI GGATG 2 cut(s) 895, 1157
BtsIMutI CAGTG 2 cut(s) 573, 757
BveI ACCTGC 1 cut(s) 1113
Cac8I GCNNGC 2 cut(s) 852, 1269
CaiI CAGNNNCTG 1 cut(s) 620
CseI GACGC 2 cut(s) 530, 827
Csp6I GTAC 2 cut(s) 156, 1110
CviAII CATG 7 cut(s) 317, 380, 856, 877, 1067, 1167, 1237
CviQI GTAC 2 cut(s) 156, 1110
DdeI CTNAG 1 cut(s) 245
DpnI GATC 6 cut(s) 29, 102, 186, 211, 515, 829
DpnII GATC 6 cut(s) 27, 100, 184, 209, 513, 827
DraI TTTAAA 1 cut(s) 1009
DrdI GACNNNNNNGTC 1 cut(s) 122
DseDI GACNNNNNNGTC 1 cut(s) 122
Eam1104I CTCTTC 2 cut(s) 257, 969
EarI CTCTTC 2 cut(s) 257, 969
Eco130I CCWWGG 1 cut(s) 316
Eco32I GATATC 1 cut(s) 1045
Eco57I CTGAAG 1 cut(s) 258
EcoNI CCTNNNNNAGG 1 cut(s) 264
EcoRII CCWGG 1 cut(s) 1180
EcoRV GATATC 1 cut(s) 1045
EcoT14I CCWWGG 1 cut(s) 316
EcoT22I ATGCAT 1 cut(s) 1279
ErhI CCWWGG 1 cut(s) 316
Esp3I CGTCTC 1 cut(s) 737
FaeI CATG 7 cut(s) 320, 383, 859, 880, 1070, 1170, 1240
FaqI GGGAC 3 cut(s) 110, 336, 1172
FatI CATG 7 cut(s) 316, 379, 855, 876, 1066, 1166, 1236
FauNDI CATATG 1 cut(s) 1273
FbaI TGATCA 3 cut(s) 27, 100, 184
Fnu4HI GCNGC 5 cut(s) 324, 558, 615, 747, 936
FokI GGATG 2 cut(s) 882, 1164
Fsp4HI GCNGC 5 cut(s) 324, 558, 615, 747, 936
FspBI CTAG 1 cut(s) 452
GluI GCNGC 5 cut(s) 324, 558, 615, 747, 936
GsaI CCCAGC 1 cut(s) 556
HapII CCGG 1 cut(s) 113
HgaI GACGC 2 cut(s) 530, 827
Hin1I GRCGYC 1 cut(s) 522
Hin1II CATG 7 cut(s) 320, 383, 859, 880, 1070, 1170, 1240
HincII GTYRAC 1 cut(s) 346
HindII GTYRAC 1 cut(s) 346
HindIII AAGCTT 2 cut(s) 215, 970
HinfI GANTC 2 cut(s) 419, 1198
HpaII CCGG 1 cut(s) 113
HphI GGTGA 2 cut(s) 59, 179
Hpy166II GTNNAC 3 cut(s) 346, 482, 625
Hpy188I TCNGA 3 cut(s) 10, 238, 536
Hpy188III TCNNGA 3 cut(s) 98, 825, 1195
Hpy8I GTNNAC 3 cut(s) 346, 482, 625
HpyAV CCTTC 2 cut(s) 535, 986
HpyCH4III ACNGT 2 cut(s) 181, 350
HpyCH4IV ACGT 1 cut(s) 730
HpyF10VI GCNNNNNNNGC 5 cut(s) 752, 818, 856, 941, 1128
HpyF3I CTNAG 1 cut(s) 245
HpySE526I ACGT 1 cut(s) 730
Hsp92I GRCGYC 1 cut(s) 522
Hsp92II CATG 7 cut(s) 320, 383, 859, 880, 1070, 1170, 1240
Ksp22I TGATCA 3 cut(s) 27, 100, 184
Kzo9I GATC 6 cut(s) 27, 100, 184, 209, 513, 827
Lsp1109I GCAGC 4 cut(s) 335, 569, 626, 947
LweI GCATC 5 cut(s) 626, 830, 904, 946, 1286
MaeI CTAG 1 cut(s) 452
MaeII ACGT 1 cut(s) 730
MaeIII GTNAC 2 cut(s) 787, 1171
MalI GATC 6 cut(s) 29, 102, 186, 211, 515, 829
MboI GATC 6 cut(s) 27, 100, 184, 209, 513, 827
MboII GAAGA 5 cut(s) 244, 282, 956, 1082, 1241
MfeI CAATTG 1 cut(s) 489
MflI RGATCY 1 cut(s) 209
MluCI AATT 8 cut(s) 42, 398, 489, 602, 1004, 1144, 1203, 1245
MmeI TCCRAC 3 cut(s) 108, 617, 794
MnlI CCTC 6 cut(s) 9, 75, 98, 254, 260, 727
Mph1103I ATGCAT 1 cut(s) 1279
MseI TTAA 3 cut(s) 905, 1008, 1076
MslI CAYNNNNRTG 1 cut(s) 905
MspI CCGG 1 cut(s) 113
MspR9I CCNGG 1 cut(s) 1182
MunI CAATTG 1 cut(s) 489
MvaI CCWGG 1 cut(s) 1182
MwoI GCNNNNNNNGC 5 cut(s) 752, 818, 856, 941, 1128
NcoI CCATGG 1 cut(s) 316
NdeI CATATG 1 cut(s) 1273
NdeII GATC 6 cut(s) 27, 100, 184, 209, 513, 827
NlaIII CATG 7 cut(s) 320, 383, 859, 880, 1070, 1170, 1240
NmuCI GTSAC 2 cut(s) 787, 1171
NsiI ATGCAT 1 cut(s) 1279
NspI RCATGY 1 cut(s) 880
PfeI GAWTC 2 cut(s) 419, 1198
PkrI GCNGC 5 cut(s) 325, 559, 616, 748, 937
Psp6I CCWGG 1 cut(s) 1180
PspFI CCCAGC 1 cut(s) 552
PspGI CCWGG 1 cut(s) 1180
PstI CTGCAG 1 cut(s) 937
PstNI CAGNNNCTG 1 cut(s) 620
PsuI RGATCY 1 cut(s) 209
RsaI GTAC 2 cut(s) 157, 1111
RsaNI GTAC 2 cut(s) 156, 1110
RseI CAYNNNNRTG 1 cut(s) 905
SaqAI TTAA 3 cut(s) 905, 1008, 1076
SatI GCNGC 5 cut(s) 324, 558, 615, 747, 936
Sau3AI GATC 6 cut(s) 27, 100, 184, 209, 513, 827
ScaI AGTACT 1 cut(s) 157
ScrFI CCNGG 1 cut(s) 1182
SetI ASST 9 cut(s) 75, 90, 219, 554, 733, 796, 974, 1127, 1186
SfaNI GCATC 5 cut(s) 626, 830, 904, 946, 1286
SfcI CTRYAG 3 cut(s) 547, 597, 933
SmiMI CAYNNNNRTG 1 cut(s) 905
SmlI CTYRAG 1 cut(s) 734
SmoI CTYRAG 1 cut(s) 734
SpeI ACTAGT 1 cut(s) 451
Sse9I AATT 8 cut(s) 42, 398, 489, 602, 1004, 1144, 1203, 1245
SsiI CCGC 2 cut(s) 747, 880
SspI AATATT 3 cut(s) 276, 674, 724
SspMI CTAG 1 cut(s) 452
StyD4I CCNGG 1 cut(s) 1180
StyI CCWWGG 1 cut(s) 316
TaaI ACNGT 2 cut(s) 181, 350
TaiI ACGT 1 cut(s) 733
TasI AATT 8 cut(s) 42, 398, 489, 602, 1004, 1144, 1203, 1245
TatI WGTACW 1 cut(s) 155
TauI GCSGC 1 cut(s) 749
TfiI GAWTC 2 cut(s) 419, 1198
Tru1I TTAA 3 cut(s) 905, 1008, 1076
Tru9I TTAA 3 cut(s) 905, 1008, 1076
TscAI CASTG 2 cut(s) 580, 757
TseFI GTSAC 2 cut(s) 787, 1171
TseI GCWGC 4 cut(s) 323, 557, 614, 935
Tsp45I GTSAC 2 cut(s) 787, 1171
TspDTI ATGAA 5 cut(s) 219, 236, 532, 1083, 1242
TspRI CASTG 2 cut(s) 580, 757
XagI CCTNNNNNAGG 1 cut(s) 264
XapI RAATTY 2 cut(s) 602, 1004
XceI RCATGY 1 cut(s) 880
XspI CTAG 1 cut(s) 452
ZrmI AGTACT 1 cut(s) 157
Zsp2I ATGCAT 1 cut(s) 1279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.