Rorug04G0083200

BAHD acyltransferase At5g47980-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
12654173 .. 12656595
2423 bp
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UTR
Exon/CDS
Intron
Rorug04G0083200.1

Sequence Viewer

Length: 501 bp
ATGGAAGCATTTGTCTTGATATCCTCAAAGAGCAATGGAATCCAGCCCTTACTATCTCTAAGAGGAGGAGGTTGGAAGGTGAAAGATGAGGGAGAGAGATCAAGAGGTTGCAGCAATGGAAGGGGCTGTCGTGTGGTGGTGGCGGCTCTGGCAAAGATAGAGTTGATGCACTCATGCGACAATACTTGCGAGGAGCTAAGGGAGTTTGGGAAAACTGAAGATGATTTGAAGTCACTTCAAAGTATTGGTCAGATGAACCCTGAGCTCTTCCTTAGAGTGGGCATCAAACCACCCAAGCCCGTACAAAATCTCTTTGAGGATAATGATATAGCTAAACAGCTCTTACAAAGTGTTTTAGAGAGCAAAGAGCAGTTGAAACCCATGGTGGCTTTGCTACAGCTTGTTTCTCTATATCGAAAGGATATTATTTGGCAAGGAGATATCATTGGAGTTAATGCAGTGCTGCAGTTATTCGTGGTTGATATCCAATCAGAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

166

Amino Acids

18.47

Weight (kDa)

5.32

Isoelectric Point (pI)

48.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 143
AcuI CTGAAG 1 cut(s) 237
AfaI GTAC 1 cut(s) 303
AfiI CCNNNNNNNGG 1 cut(s) 277
AgsI TTSAA 3 cut(s) 229, 239, 376
AluBI AGCT 5 cut(s) 196, 265, 332, 340, 400
AluI AGCT 5 cut(s) 196, 265, 332, 340, 400
Alw21I GWGCWC 1 cut(s) 267
ApeKI GCWGC 2 cut(s) 111, 463
ArsI GACNNNNNNTTYG 2 cut(s) 232, 264
AsuHPI GGTGA 1 cut(s) 91
BanII GRGCYC 1 cut(s) 267
Bbv12I GWGCWC 1 cut(s) 267
BbvI GCAGC 2 cut(s) 123, 450
BfmI CTRYAG 2 cut(s) 395, 464
BisI GCNGC 3 cut(s) 112, 144, 464
BlsI GCNGC 3 cut(s) 113, 145, 465
BmsI GCATC 2 cut(s) 156, 291
Bpu10I CCTNAGC 2 cut(s) 197, 261
BsaJI CCNNGG 1 cut(s) 381
Bsc4I CCNNNNNNNGG 1 cut(s) 277
Bse3DI GCAATG 2 cut(s) 40, 121
BseDI CCNNGG 1 cut(s) 381
BseLI CCNNNNNNNGG 1 cut(s) 277
BseMI GCAATG 2 cut(s) 40, 121
BseMII CTCAG 1 cut(s) 252
BseRI GAGGAG 3 cut(s) 78, 81, 206
BseXI GCAGC 2 cut(s) 123, 450
BsiHKAI GWGCWC 1 cut(s) 267
BslI CCNNNNNNNGG 1 cut(s) 277
Bsp1286I GDGCHC 1 cut(s) 267
Bsp143I GATC 1 cut(s) 98
Bsp19I CCATGG 1 cut(s) 381
BspACI CCGC 1 cut(s) 143
BspCNI CTCAG 1 cut(s) 253
BspMAI CTGCAG 1 cut(s) 468
BspQI GCTCTTC 1 cut(s) 272
BsrDI GCAATG 2 cut(s) 40, 121
BssECI CCNNGG 1 cut(s) 381
BssMI GATC 1 cut(s) 98
BssT1I CCWWGG 1 cut(s) 381
Bst6I CTCTTC 1 cut(s) 272
BstDEI CTNAG 4 cut(s) 59, 197, 261, 272
BstDSI CCRYGG 1 cut(s) 381
BstKTI GATC 1 cut(s) 101
BstMBI GATC 1 cut(s) 98
BstMWI GCNNNNNNNGC 1 cut(s) 149
BstSFI CTRYAG 2 cut(s) 395, 464
BstV1I GCAGC 2 cut(s) 123, 450
BtgI CCRYGG 1 cut(s) 381
BtsI GCAGTG 1 cut(s) 465
BtsIMutI CAGTG 1 cut(s) 465
Csp6I GTAC 1 cut(s) 302
CviAII CATG 2 cut(s) 174, 382
CviQI GTAC 1 cut(s) 302
DdeI CTNAG 4 cut(s) 59, 197, 261, 272
DpnI GATC 1 cut(s) 100
DpnII GATC 1 cut(s) 98
Eam1104I CTCTTC 1 cut(s) 272
EarI CTCTTC 1 cut(s) 272
Ecl136II GAGCTC 1 cut(s) 265
Eco130I CCWWGG 1 cut(s) 381
Eco24I GRGCYC 1 cut(s) 267
Eco32I GATATC 3 cut(s) 21, 442, 484
Eco53kI GAGCTC 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 237
EcoICRI GAGCTC 1 cut(s) 265
EcoRV GATATC 3 cut(s) 21, 442, 484
EcoT14I CCWWGG 1 cut(s) 381
EcoT38I GRGCYC 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 381
FaeI CATG 2 cut(s) 177, 385
FaiI YATR 4 cut(s) 175, 329, 383, 412
FatI CATG 2 cut(s) 173, 381
Fnu4HI GCNGC 3 cut(s) 112, 144, 464
FriOI GRGCYC 1 cut(s) 267
Fsp4HI GCNGC 3 cut(s) 112, 144, 464
GluI GCNGC 3 cut(s) 112, 144, 464
Hin1II CATG 2 cut(s) 177, 385
HinfI GANTC 1 cut(s) 39
HphI GGTGA 1 cut(s) 91
Hpy188I TCNGA 2 cut(s) 252, 493
Hpy188III TCNNGA 2 cut(s) 16, 102
HpyAV CCTTC 2 cut(s) 70, 114
HpyCH4V TGCA 4 cut(s) 111, 169, 458, 466
HpyF10VI GCNNNNNNNGC 1 cut(s) 149
HpyF3I CTNAG 4 cut(s) 59, 197, 261, 272
Hsp92II CATG 2 cut(s) 177, 385
Kzo9I GATC 1 cut(s) 98
LguI GCTCTTC 1 cut(s) 272
LmnI GCTCC 1 cut(s) 193
LpnPI CCDG 3 cut(s) 56, 134, 273
Lsp1109I GCAGC 2 cut(s) 123, 450
LweI GCATC 2 cut(s) 156, 291
MaeIII GTNAC 1 cut(s) 231
MalI GATC 1 cut(s) 100
MboI GATC 1 cut(s) 98
MboII GAAGA 2 cut(s) 230, 259
MhlI GDGCHC 1 cut(s) 267
MmeI TCCRAC 1 cut(s) 53
MnlI CCTC 8 cut(s) 34, 56, 59, 62, 82, 98, 184, 310
MseI TTAA 1 cut(s) 453
MwoI GCNNNNNNNGC 1 cut(s) 149
NcoI CCATGG 1 cut(s) 381
NdeII GATC 1 cut(s) 98
NlaIII CATG 2 cut(s) 177, 385
NmuCI GTSAC 1 cut(s) 231
PciSI GCTCTTC 1 cut(s) 272
PfeI GAWTC 1 cut(s) 39
PkrI GCNGC 3 cut(s) 113, 145, 465
Psp124BI GAGCTC 1 cut(s) 267
PstI CTGCAG 1 cut(s) 468
RsaI GTAC 1 cut(s) 303
RsaNI GTAC 1 cut(s) 302
SacI GAGCTC 1 cut(s) 267
SapI GCTCTTC 1 cut(s) 272
SaqAI TTAA 1 cut(s) 453
SatI GCNGC 3 cut(s) 112, 144, 464
Sau3AI GATC 1 cut(s) 98
SduI GDGCHC 1 cut(s) 267
SetI ASST 8 cut(s) 73, 81, 109, 198, 267, 334, 342, 402
SfaNI GCATC 2 cut(s) 156, 291
SfcI CTRYAG 2 cut(s) 395, 464
SsiI CCGC 1 cut(s) 143
SstI GAGCTC 1 cut(s) 267
StyI CCWWGG 1 cut(s) 381
TaqI TCGA 1 cut(s) 415
TauI GCSGC 1 cut(s) 146
TfiI GAWTC 1 cut(s) 39
Tru1I TTAA 1 cut(s) 453
Tru9I TTAA 1 cut(s) 453
TscAI CASTG 1 cut(s) 465
TseFI GTSAC 1 cut(s) 231
TseI GCWGC 2 cut(s) 111, 463
Tsp45I GTSAC 1 cut(s) 231
TspDTI ATGAA 1 cut(s) 269
TspRI CASTG 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.