RLG00000032943

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000200
Physical Location & Seq
Forward (+)
21232981 .. 21236403
3423 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032943

Sequence Viewer

Length: 399 bp
ATGAAAGCCGAGGCCAACTGCTTTGAATGCGGAGGAGTTGCGATTGGGGTCAGCATTTCACACAAGGCTGCAGATGCCTCTACACTCGGCACGTTCATCAGTAGCTGGGCTGCAGTGGCCCTTGGTGCAGAGACAGAACAAAGTGAAGCAAATGATCTTCAAAGCTTGGTTGCTATACTTAGGGAAGGCATTGAGGAGTTTGAAGCCAAATATGGTAATGGAGTTAGCAGCGAAGGTGTACGTGAACTTTACAAGGAGCACCGGAACCTGGTGGGAAAGAATGTAGAGTATCGTCTCAGGCCAATCAGATTGGGGGCGCGCTGGCGGCGGCAACCCGAGGCAAGTGGTGGTCCGATGCAGGAGGGGCTGATCCGAGGCGGGGATAACTTTCCATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

133

Amino Acids

14.31

Weight (kDa)

5.45

Isoelectric Point (pI)

52.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 8 - 60 1.5e-11 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 319
AciI CCGC 4 cut(s) 30, 325, 328, 378
AclWI GGATC 1 cut(s) 364
AfaI GTAC 1 cut(s) 240
AfiI CCNNNNNNNGG 2 cut(s) 268, 379
AgsI TTSAA 3 cut(s) 26, 161, 203
AjnI CCWGG 1 cut(s) 267
AluBI AGCT 2 cut(s) 105, 165
AluI AGCT 2 cut(s) 105, 165
Alw21I GWGCWC 1 cut(s) 261
Alw26I GTCTC 2 cut(s) 125, 299
AlwI GGATC 1 cut(s) 364
AlwNI CAGNNNCTG 1 cut(s) 105
Ama87I CYCGRG 1 cut(s) 335
AoxI GGCC 3 cut(s) 12, 117, 299
ApeKI GCWGC 3 cut(s) 68, 110, 228
AspLEI GCGC 2 cut(s) 319, 321
AspS9I GGNCC 2 cut(s) 118, 350
AvaI CYCGRG 1 cut(s) 335
AvaII GGWCC 1 cut(s) 350
Bbv12I GWGCWC 1 cut(s) 261
BbvI GCAGC 3 cut(s) 55, 97, 240
BciT130I CCWGG 1 cut(s) 269
BcoDI GTCTC 2 cut(s) 125, 299
BfmI CTRYAG 2 cut(s) 69, 111
BisI GCNGC 5 cut(s) 69, 111, 229, 326, 329
BlsI GCNGC 5 cut(s) 70, 112, 230, 327, 330
Bme1390I CCNGG 1 cut(s) 269
Bme18I GGWCC 1 cut(s) 350
BmeT110I CYCGRG 1 cut(s) 335
BmgT120I GGNCC 2 cut(s) 118, 350
BmiI GGNNCC 1 cut(s) 266
BmrFI CCNGG 1 cut(s) 269
BmsI GCATC 2 cut(s) 64, 345
BsaAI YACGTR 1 cut(s) 242
BsaJI CCNNGG 4 cut(s) 9, 121, 336, 373
BsaWI WCCGGW 1 cut(s) 261
Bsc4I CCNNNNNNNGG 2 cut(s) 268, 379
BseBI CCWGG 1 cut(s) 269
BseDI CCNNGG 4 cut(s) 9, 121, 336, 373
BseLI CCNNNNNNNGG 2 cut(s) 268, 379
BseMII CTCAG 1 cut(s) 310
BsePI GCGCGC 1 cut(s) 317
BseRI GAGGAG 2 cut(s) 48, 209
BseXI GCAGC 3 cut(s) 55, 97, 240
BseYI CCCAGC 1 cut(s) 105
BsgI GTGCAG 1 cut(s) 147
Bsh1236I CGCG 1 cut(s) 319
BshFI GGCC 3 cut(s) 14, 119, 301
BsiHKAI GWGCWC 1 cut(s) 261
BsiHKCI CYCGRG 1 cut(s) 335
BsiSI CCGG 1 cut(s) 262
BslI CCNNNNNNNGG 2 cut(s) 268, 379
BsmAI GTCTC 2 cut(s) 125, 299
BsmBI CGTCTC 1 cut(s) 299
BsmI GAATGC 1 cut(s) 32
BsnI GGCC 3 cut(s) 14, 119, 301
BsoBI CYCGRG 1 cut(s) 335
Bsp1286I GDGCHC 1 cut(s) 261
Bsp143I GATC 2 cut(s) 154, 369
BspACI CCGC 4 cut(s) 30, 325, 328, 378
BspANI GGCC 3 cut(s) 14, 119, 301
BspCNI CTCAG 1 cut(s) 309
BspFNI CGCG 1 cut(s) 319
BspLI GGNNCC 1 cut(s) 266
BspMAI CTGCAG 2 cut(s) 73, 115
BspPI GGATC 1 cut(s) 364
BssECI CCNNGG 4 cut(s) 9, 121, 336, 373
BssHII GCGCGC 1 cut(s) 317
BssMI GATC 2 cut(s) 154, 369
BssT1I CCWWGG 1 cut(s) 121
Bst2UI CCWGG 1 cut(s) 269
BstBAI YACGTR 1 cut(s) 242
BstC8I GCNNGC 2 cut(s) 319, 323
BstDEI CTNAG 2 cut(s) 179, 296
BstFNI CGCG 1 cut(s) 319
BstHHI GCGC 2 cut(s) 319, 321
BstKTI GATC 2 cut(s) 157, 372
BstMAI GTCTC 2 cut(s) 125, 299
BstMBI GATC 2 cut(s) 154, 369
BstMWI GCNNNNNNNGC 6 cut(s) 27, 74, 116, 125, 325, 364
BstNI CCWGG 1 cut(s) 269
BstSCI CCNGG 1 cut(s) 267
BstSFI CTRYAG 2 cut(s) 69, 111
BstUI CGCG 1 cut(s) 319
BstV1I GCAGC 3 cut(s) 55, 97, 240
BsuRI GGCC 3 cut(s) 14, 119, 301
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 120
Cac8I GCNNGC 2 cut(s) 319, 323
CaiI CAGNNNCTG 1 cut(s) 105
CfoI GCGC 2 cut(s) 319, 321
Cfr13I GGNCC 2 cut(s) 118, 350
CsiI ACCWGGT 1 cut(s) 267
Csp6I GTAC 1 cut(s) 239
CviQI GTAC 1 cut(s) 239
DdeI CTNAG 2 cut(s) 179, 296
DpnI GATC 2 cut(s) 156, 371
DpnII GATC 2 cut(s) 154, 369
Eco130I CCWWGG 1 cut(s) 121
Eco47I GGWCC 1 cut(s) 350
Eco88I CYCGRG 1 cut(s) 335
EcoRII CCWGG 1 cut(s) 267
EcoT14I CCWWGG 1 cut(s) 121
ErhI CCWWGG 1 cut(s) 121
Esp3I CGTCTC 1 cut(s) 299
FaiI YATR 3 cut(s) 176, 213, 394
FauI CCCGC 1 cut(s) 371
Fnu4HI GCNGC 5 cut(s) 69, 111, 229, 326, 329
Fsp4HI GCNGC 5 cut(s) 69, 111, 229, 326, 329
GlaI GCGC 2 cut(s) 318, 320
GluI GCNGC 5 cut(s) 69, 111, 229, 326, 329
GsaI CCCAGC 1 cut(s) 109
HaeIII GGCC 3 cut(s) 14, 119, 301
HapII CCGG 1 cut(s) 262
HhaI GCGC 2 cut(s) 319, 321
Hin6I GCGC 2 cut(s) 317, 319
HinP1I GCGC 2 cut(s) 317, 319
HindIII AAGCTT 1 cut(s) 163
HpaII CCGG 1 cut(s) 262
Hpy166II GTNNAC 2 cut(s) 239, 245
Hpy188I TCNGA 3 cut(s) 308, 354, 374
Hpy8I GTNNAC 2 cut(s) 239, 245
HpyAV CCTTC 2 cut(s) 179, 227
HpyCH4IV ACGT 2 cut(s) 92, 241
HpyCH4V TGCA 4 cut(s) 71, 113, 128, 358
HpyF10VI GCNNNNNNNGC 6 cut(s) 27, 74, 116, 125, 325, 364
HpyF3I CTNAG 2 cut(s) 179, 296
HpySE526I ACGT 2 cut(s) 92, 241
HspAI GCGC 2 cut(s) 317, 319
Kzo9I GATC 2 cut(s) 154, 369
LmnI GCTCC 1 cut(s) 256
LpnPI CCDG 7 cut(s) 91, 254, 275, 281, 283, 307, 344
Lsp1109I GCAGC 3 cut(s) 55, 97, 240
LweI GCATC 2 cut(s) 64, 345
MabI ACCWGGT 1 cut(s) 267
MaeII ACGT 2 cut(s) 92, 241
MalI GATC 2 cut(s) 156, 371
MboI GATC 2 cut(s) 154, 369
MboII GAAGA 1 cut(s) 149
MhlI GDGCHC 1 cut(s) 261
MnlI CCTC 7 cut(s) 4, 26, 88, 187, 331, 355, 368
MspI CCGG 1 cut(s) 262
MspR9I CCNGG 1 cut(s) 269
Mva1269I GAATGC 1 cut(s) 32
MvaI CCWGG 1 cut(s) 269
MvnI CGCG 1 cut(s) 319
MwoI GCNNNNNNNGC 6 cut(s) 27, 74, 116, 125, 325, 364
NdeII GATC 2 cut(s) 154, 369
NlaIV GGNNCC 1 cut(s) 266
NmeAIII GCCGAG 2 cut(s) 34, 66
PauI GCGCGC 1 cut(s) 317
PctI GAATGC 1 cut(s) 32
PkrI GCNGC 5 cut(s) 70, 112, 230, 327, 330
Ppu21I YACGTR 1 cut(s) 242
Psp6I CCWGG 1 cut(s) 267
PspFI CCCAGC 1 cut(s) 105
PspGI CCWGG 1 cut(s) 267
PspN4I GGNNCC 1 cut(s) 266
PspPI GGNCC 2 cut(s) 118, 350
PstI CTGCAG 2 cut(s) 73, 115
PstNI CAGNNNCTG 1 cut(s) 105
PteI GCGCGC 1 cut(s) 317
RsaI GTAC 1 cut(s) 240
RsaNI GTAC 1 cut(s) 239
SatI GCNGC 5 cut(s) 69, 111, 229, 326, 329
Sau3AI GATC 2 cut(s) 154, 369
Sau96I GGNCC 2 cut(s) 118, 350
ScrFI CCNGG 1 cut(s) 269
SduI GDGCHC 1 cut(s) 261
SetI ASST 6 cut(s) 95, 107, 167, 238, 244, 270
SexAI ACCWGGT 1 cut(s) 267
SfaNI GCATC 2 cut(s) 64, 345
SfcI CTRYAG 2 cut(s) 69, 111
SinI GGWCC 1 cut(s) 350
SsiI CCGC 4 cut(s) 30, 325, 328, 378
StyD4I CCNGG 1 cut(s) 267
StyI CCWWGG 1 cut(s) 121
TaiI ACGT 2 cut(s) 95, 244
TauI GCSGC 2 cut(s) 328, 331
TscAI CASTG 1 cut(s) 120
TseI GCWGC 3 cut(s) 68, 110, 228
TspDTI ATGAA 2 cut(s) 17, 85
TspRI CASTG 1 cut(s) 120
VpaK11BI GGWCC 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.