Rroxscaffold_5G00352550

BAHD acyltransferase At5g47980-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
29619191 .. 29632706
13516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00352550.1

Sequence Viewer

Length: 1089 bp
ATGAAGGCAACAACTGGACATCTTCAACAACTCCCAATTCCAAAGAAGATAGAATATCAGCAATCAAATAACTTTCATGCTCTTCACCCCAAGGTGATCGCTCCAAGTAGTAGGCATAGTGACTACTTTACTCCTTGTGCTCCAAAGTGGTTAGGGGCAGAGTTTTCGTGCAGCAGGTCAAGAAGAATATTTAGCCACAACAACATTCTTTCAATCTGTTGCAATGACAATGGGGCTGCATTTATTGAAACTCATGTCAATTGTCCCATATCAAAGGTTATGGAAAAGCACAATTCTGGGATACTAAGTCAATTACTTCCTAATGACCCACAATCAACATTTGAAAGCACAGACTATCTCCTATTAGTCCAAGCCAACTTCTTTGAATGTGGTGGACTTGCAATTGGGATTACCATTTCACACAAGATCGCGGACGGCTTCGTCAATAAGAGATTTGTGTTTGATGCCTCAAATATTGTACATCTCAAGTCTAAAGCTACCAGTGCCACCGTTCCAAATCCAACTCGTGTTGAAGTAGTGACAAGCACTTCTTTGGAAATGTGCAATGGAAGCATCAAGATCAAACTTGAGTTTTACAAAGCCAACTATGTTGTTTCTAGCAGCAAACATGCGAAAAGTATTGAAGCATCCCACTTTAATGGGAAATCTTGTAGGATGTGTCTTTGCAAAGCAAAGACACAAGAAGGTGATGCAACTCTTCAAAGCTTAGTTGCGATACTCGTGAAAAGCATTGAGGAATTTCAAGTGAAATATGGTGAGGGAGTTAGCAGGGATGCTATTTGCCAACATTTTAAAGAGTTTGGAGATTTAATGGATAATAATCATATAAATACCTATTTCTGCACCAGTTGGTGCAGGTTTGGCTTTTATGAAGCCAATTTTGGATGGGGAATGCCATCTTGGGTCACTTTTCCAGGTACGAAAATTAAGAATACAATTGTGTTGATTGATACAAAAGACGGAGAAGGCATGGAAGCGTTCTTGAGTTTAAAAGAAGAGGACATGGCTGTAATTGAAACCAATAAGGAGCTGCTTGCATATGCTTCTCTCAATCCCACTGTTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

362

Amino Acids

40.31

Weight (kDa)

7.55

Isoelectric Point (pI)

45.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 68 - 146 7.7e-16 Transferase family
Transferase PF02458 283 - 351 1.1e-13 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 440
Acc36I ACCTGC 2 cut(s) 165, 867
AccII CGCG 1 cut(s) 431
AciI CCGC 1 cut(s) 431
AcsI RAATTY 1 cut(s) 758
AfaI GTAC 2 cut(s) 480, 940
AjnI CCWGG 1 cut(s) 934
AjuI GAANNNNNNNTTGG 4 cut(s) 885, 904, 917, 936
AluBI AGCT 3 cut(s) 497, 726, 1051
AluI AGCT 3 cut(s) 497, 726, 1051
Alw21I GWGCWC 1 cut(s) 142
ApeKI GCWGC 4 cut(s) 171, 236, 621, 1051
ApoI RAATTY 1 cut(s) 758
AsuHPI GGTGA 4 cut(s) 77, 106, 719, 788
BauI CACGAG 2 cut(s) 525, 740
Bbv12I GWGCWC 1 cut(s) 142
BbvI GCAGC 4 cut(s) 183, 223, 633, 1038
BccI CCATC 2 cut(s) 900, 925
BceAI ACGGC 1 cut(s) 451
BcgI CGANNNNNNTGC 2 cut(s) 147, 181
BciT130I CCWGG 1 cut(s) 936
BciVI GTATCC 1 cut(s) 294
BfaI CTAG 1 cut(s) 618
BfuAI ACCTGC 2 cut(s) 165, 867
BfuI GTATCC 1 cut(s) 294
BisI GCNGC 4 cut(s) 172, 237, 622, 1052
BlsI GCNGC 4 cut(s) 173, 238, 623, 1053
Bme1390I CCNGG 1 cut(s) 936
BmrFI CCNGG 1 cut(s) 936
BmsI GCATC 5 cut(s) 454, 582, 656, 700, 784
BpuEI CTTGAG 3 cut(s) 470, 608, 1024
BsaBI GATNNNNATC 1 cut(s) 840
BsaJI CCNNGG 1 cut(s) 90
Bse1I ACTGG 3 cut(s) 19, 501, 867
Bse3DI GCAATG 2 cut(s) 229, 571
Bse8I GATNNNNATC 1 cut(s) 840
BseBI CCWGG 1 cut(s) 936
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 4 cut(s) 647, 681, 799, 911
BseJI GATNNNNATC 1 cut(s) 840
BseMI GCAATG 2 cut(s) 229, 571
BseNI ACTGG 3 cut(s) 19, 501, 867
BseXI GCAGC 4 cut(s) 183, 223, 633, 1038
BsgI GTGCAG 3 cut(s) 190, 847, 895
Bsh1236I CGCG 1 cut(s) 431
BsiHKAI GWGCWC 1 cut(s) 142
BslFI GGGAC 1 cut(s) 249
BsmFI GGGAC 1 cut(s) 249
BsmI GAATGC 1 cut(s) 918
Bsp1286I GDGCHC 1 cut(s) 142
Bsp1407I TGTACA 1 cut(s) 478
Bsp143I GATC 3 cut(s) 96, 426, 579
BspACI CCGC 1 cut(s) 431
BspFNI CGCG 1 cut(s) 431
BspMI ACCTGC 2 cut(s) 165, 867
BspQI GCTCTTC 1 cut(s) 87
BsrDI GCAATG 2 cut(s) 229, 571
BsrGI TGTACA 1 cut(s) 478
BsrI ACTGG 3 cut(s) 19, 501, 867
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 3 cut(s) 96, 426, 579
BssSI CACGAG 2 cut(s) 525, 740
BssT1I CCWWGG 1 cut(s) 90
Bst2BI CACGAG 2 cut(s) 525, 740
Bst2UI CCWGG 1 cut(s) 936
Bst4CI ACNGT 2 cut(s) 511, 1081
Bst6I CTCTTC 3 cut(s) 87, 723, 1011
BstAUI TGTACA 1 cut(s) 478
BstC8I GCNNGC 1 cut(s) 1056
BstDEI CTNAG 2 cut(s) 305, 727
BstF5I GGATG 4 cut(s) 647, 681, 799, 911
BstFNI CGCG 1 cut(s) 431
BstKTI GATC 3 cut(s) 99, 429, 582
BstMBI GATC 3 cut(s) 96, 426, 579
BstMWI GCNNNNNNNGC 3 cut(s) 503, 570, 882
BstNI CCWGG 1 cut(s) 936
BstNSI RCATGY 1 cut(s) 632
BstSCI CCNGG 1 cut(s) 934
BstUI CGCG 1 cut(s) 431
BstV1I GCAGC 4 cut(s) 183, 223, 633, 1038
BstXI CCANNNNNNTGG 1 cut(s) 659
BsuI GTATCC 1 cut(s) 294
BtsCI GGATG 4 cut(s) 647, 681, 799, 911
BtsIMutI CAGTG 2 cut(s) 508, 1077
BveI ACCTGC 2 cut(s) 165, 867
Cac8I GCNNGC 1 cut(s) 1056
Csp6I GTAC 2 cut(s) 479, 939
CviAII CATG 5 cut(s) 77, 254, 629, 991, 1024
CviQI GTAC 2 cut(s) 479, 939
DdeI CTNAG 2 cut(s) 305, 727
DpnI GATC 3 cut(s) 98, 428, 581
DpnII GATC 3 cut(s) 96, 426, 579
DraI TTTAAA 2 cut(s) 814, 1011
DrdI GACNNNNNNGTC 1 cut(s) 440
DseDI GACNNNNNNGTC 1 cut(s) 440
Eam1104I CTCTTC 3 cut(s) 87, 723, 1011
EarI CTCTTC 3 cut(s) 87, 723, 1011
Eco130I CCWWGG 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 934
EcoT14I CCWWGG 1 cut(s) 90
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 5 cut(s) 80, 257, 632, 994, 1027
FalI AAGNNNNNCTT 2 cut(s) 535, 567
FaqI GGGAC 1 cut(s) 249
FatI CATG 5 cut(s) 76, 253, 628, 990, 1023
FauNDI CATATG 1 cut(s) 1060
Fnu4HI GCNGC 4 cut(s) 172, 237, 622, 1052
FokI GGATG 4 cut(s) 634, 688, 806, 918
Fsp4HI GCNGC 4 cut(s) 172, 237, 622, 1052
FspBI CTAG 1 cut(s) 618
GluI GCNGC 4 cut(s) 172, 237, 622, 1052
Hin1II CATG 5 cut(s) 80, 257, 632, 994, 1027
HindIII AAGCTT 1 cut(s) 724
HphI GGTGA 4 cut(s) 77, 106, 719, 788
Hpy166II GTNNAC 1 cut(s) 395
Hpy188III TCNNGA 4 cut(s) 180, 577, 742, 1003
Hpy8I GTNNAC 1 cut(s) 395
HpyAV CCTTC 2 cut(s) 698, 980
HpyCH4III ACNGT 2 cut(s) 511, 1081
HpyF10VI GCNNNNNNNGC 3 cut(s) 503, 570, 882
HpyF3I CTNAG 2 cut(s) 305, 727
Hsp92II CATG 5 cut(s) 80, 257, 632, 994, 1027
Kzo9I GATC 3 cut(s) 96, 426, 579
LguI GCTCTTC 1 cut(s) 87
LmnI GCTCC 3 cut(s) 106, 145, 1048
LpnPI CCDG 8 cut(s) 160, 282, 514, 775, 862, 880, 921, 948
Lsp1109I GCAGC 4 cut(s) 183, 223, 633, 1038
LweI GCATC 5 cut(s) 454, 582, 656, 700, 784
MaeI CTAG 1 cut(s) 618
MaeIII GTNAC 3 cut(s) 119, 538, 925
MalI GATC 3 cut(s) 98, 428, 581
MboI GATC 3 cut(s) 96, 426, 579
MboII GAAGA 6 cut(s) 14, 58, 74, 195, 710, 1028
MfeI CAATTG 3 cut(s) 259, 402, 957
MhlI GDGCHC 1 cut(s) 142
MmeI TCCRAC 1 cut(s) 545
MnlI CCTC 4 cut(s) 478, 748, 772, 1012
MseI TTAA 5 cut(s) 657, 813, 830, 948, 1010
MslI CAYNNNNRTG 1 cut(s) 657
MspR9I CCNGG 1 cut(s) 936
MunI CAATTG 3 cut(s) 259, 402, 957
Mva1269I GAATGC 1 cut(s) 918
MvaI CCWGG 1 cut(s) 936
MvnI CGCG 1 cut(s) 431
MwoI GCNNNNNNNGC 3 cut(s) 503, 570, 882
NdeI CATATG 1 cut(s) 1060
NdeII GATC 3 cut(s) 96, 426, 579
NlaIII CATG 5 cut(s) 80, 257, 632, 994, 1027
NmuCI GTSAC 3 cut(s) 119, 538, 925
NspI RCATGY 1 cut(s) 632
PciSI GCTCTTC 1 cut(s) 87
PctI GAATGC 1 cut(s) 918
PkrI GCNGC 4 cut(s) 173, 238, 623, 1053
Psp6I CCWGG 1 cut(s) 934
PspGI CCWGG 1 cut(s) 934
RsaI GTAC 2 cut(s) 480, 940
RsaNI GTAC 2 cut(s) 479, 939
RseI CAYNNNNRTG 1 cut(s) 657
SapI GCTCTTC 1 cut(s) 87
SaqAI TTAA 5 cut(s) 657, 813, 830, 948, 1010
SatI GCNGC 4 cut(s) 172, 237, 622, 1052
Sau3AI GATC 3 cut(s) 96, 426, 579
ScrFI CCNGG 1 cut(s) 936
SduI GDGCHC 1 cut(s) 142
SfaNI GCATC 5 cut(s) 454, 582, 656, 700, 784
SmiMI CAYNNNNRTG 1 cut(s) 657
SmlI CTYRAG 3 cut(s) 485, 587, 1003
SmoI CTYRAG 3 cut(s) 485, 587, 1003
SsiI CCGC 1 cut(s) 431
SspI AATATT 2 cut(s) 189, 475
SspMI CTAG 1 cut(s) 618
StyD4I CCNGG 1 cut(s) 934
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 2 cut(s) 511, 1081
TatI WGTACW 1 cut(s) 478
Tru1I TTAA 5 cut(s) 657, 813, 830, 948, 1010
Tru9I TTAA 5 cut(s) 657, 813, 830, 948, 1010
TscAI CASTG 2 cut(s) 508, 1084
TseFI GTSAC 3 cut(s) 119, 538, 925
TseI GCWGC 4 cut(s) 171, 236, 621, 1051
Tsp45I GTSAC 3 cut(s) 119, 538, 925
TspDTI ATGAA 3 cut(s) 17, 65, 906
TspGWI ACGGA 1 cut(s) 996
TspRI CASTG 2 cut(s) 508, 1084
XapI RAATTY 1 cut(s) 758
XceI RCATGY 1 cut(s) 632
XspI CTAG 1 cut(s) 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.