Rh4AG308800

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000200
Physical Location & Seq
Forward (+)
62057116 .. 62057655
540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG308800.1

Sequence Viewer

Length: 540 bp
ATGTTCAAGCCAACTACTTTTAAGTGTGGTGCAATTGGCCTTGGCTTATGTCTTTCTCACAAGATAGCTGATGCAGCCACATTGAGCACATTCATCAGAAGTTGGGCCAATAATGCTTCTGGGATTGGCCAGAAAGTGGATCCTATATTCAACGCCATGTTAATAACCCCACCAAGAGATATCTCGATGACTACATCAGATCTTGAAAATCTTAAGATCAGAGAACACAAATCTGCAACAAAGAGGTTTGTATTCAATGGCTCAAAGATTGCTGCCCTTAGGGCCAAAGCACCTTCTGTGAGTGTCAAACAACCGACAAAGGTGAAGAGGGTAGCAGCACTCATCTGGAAATGTGCAATGAAGGCTTCAAGGACAAATTTCGGATCCTCATCTAGGCTATCGTCCCTGTACCAAAATGTGAACATTCGAAACAGAATAGTCCCTCCCCTACCAAATAACTCTGTTGGGAAGTTTGTTGGGTCTTTATTGCGAGGGCAGAGGACGCATAGGCAGAGTTACATGGCTTGGTTACTGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

179

Amino Acids

19.72

Weight (kDa)

11.24

Isoelectric Point (pI)

33.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 2 - 161 4.3e-31 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 136
AclWI GGATC 4 cut(s) 134, 147, 378, 391
AcoI YGGCCR 1 cut(s) 127
AcsI RAATTY 1 cut(s) 376
AfaI GTAC 1 cut(s) 410
AfiI CCNNNNNNNGG 2 cut(s) 136, 393
AflII CTTAAG 1 cut(s) 212
AgsI TTSAA 5 cut(s) 7, 151, 206, 256, 369
AluBI AGCT 1 cut(s) 68
AluI AGCT 1 cut(s) 68
Alw21I GWGCWC 1 cut(s) 89
AlwI GGATC 4 cut(s) 134, 147, 378, 391
AoxI GGCC 4 cut(s) 37, 105, 127, 282
ApeKI GCWGC 3 cut(s) 74, 272, 335
ApoI RAATTY 1 cut(s) 376
AspS9I GGNCC 2 cut(s) 105, 282
AsuHPI GGTGA 1 cut(s) 334
AsuII TTCGAA 1 cut(s) 427
AxyI CCTNAGG 1 cut(s) 278
BalI TGGCCA 1 cut(s) 129
BamHI GGATCC 2 cut(s) 139, 383
Bbv12I GWGCWC 1 cut(s) 89
BbvI GCAGC 3 cut(s) 86, 259, 347
BfaI CTAG 1 cut(s) 393
BfrI CTTAAG 1 cut(s) 212
BglI GCCNNNNNGGC 1 cut(s) 281
BglII AGATCT 1 cut(s) 199
BisI GCNGC 3 cut(s) 75, 273, 336
BlsI GCNGC 3 cut(s) 76, 274, 337
BmgT120I GGNCC 2 cut(s) 105, 282
BmiI GGNNCC 2 cut(s) 141, 385
BmsI GCATC 1 cut(s) 61
Bpu14I TTCGAA 1 cut(s) 427
BsaBI GATNNNNATC 1 cut(s) 388
BsaJI CCNNGG 1 cut(s) 40
Bsc4I CCNNNNNNNGG 2 cut(s) 136, 393
Bse21I CCTNAGG 1 cut(s) 278
Bse3DI GCAATG 1 cut(s) 363
Bse8I GATNNNNATC 1 cut(s) 388
BseDI CCNNGG 1 cut(s) 40
BseJI GATNNNNATC 1 cut(s) 388
BseLI CCNNNNNNNGG 2 cut(s) 136, 393
BseMI GCAATG 1 cut(s) 363
BseXI GCAGC 3 cut(s) 86, 259, 347
BshFI GGCC 4 cut(s) 39, 107, 129, 284
BsiHKAI GWGCWC 1 cut(s) 89
BslFI GGGAC 2 cut(s) 388, 425
BslI CCNNNNNNNGG 2 cut(s) 136, 393
BsmFI GGGAC 2 cut(s) 388, 425
BsnI GGCC 4 cut(s) 39, 107, 129, 284
Bsp119I TTCGAA 1 cut(s) 427
Bsp1286I GDGCHC 1 cut(s) 89
Bsp143I GATC 4 cut(s) 139, 199, 216, 383
BspANI GGCC 4 cut(s) 39, 107, 129, 284
BspLI GGNNCC 2 cut(s) 141, 385
BspPI GGATC 4 cut(s) 134, 147, 378, 391
BspT104I TTCGAA 1 cut(s) 427
BspTI CTTAAG 1 cut(s) 212
BsrDI GCAATG 1 cut(s) 363
BssECI CCNNGG 1 cut(s) 40
BssMI GATC 4 cut(s) 139, 199, 216, 383
BssT1I CCWWGG 1 cut(s) 40
Bst6I CTCTTC 1 cut(s) 320
BstAFI CTTAAG 1 cut(s) 212
BstBI TTCGAA 1 cut(s) 427
BstDEI CTNAG 1 cut(s) 278
BstENI CCTNNNNNAGG 1 cut(s) 391
BstKTI GATC 4 cut(s) 142, 202, 219, 386
BstMBI GATC 4 cut(s) 139, 199, 216, 383
BstMWI GCNNNNNNNGC 5 cut(s) 74, 113, 281, 362, 502
BstV1I GCAGC 3 cut(s) 86, 259, 347
BstX2I RGATCY 3 cut(s) 139, 199, 383
BstYI RGATCY 3 cut(s) 139, 199, 383
Bsu36I CCTNAGG 1 cut(s) 278
BsuRI GGCC 4 cut(s) 39, 107, 129, 284
Cfr13I GGNCC 2 cut(s) 105, 282
CseI GACGC 1 cut(s) 511
Csp6I GTAC 1 cut(s) 409
CviAII CATG 2 cut(s) 157, 520
CviQI GTAC 1 cut(s) 409
DdeI CTNAG 1 cut(s) 278
DpnI GATC 4 cut(s) 141, 201, 218, 385
DpnII GATC 4 cut(s) 139, 199, 216, 383
EaeI YGGCCR 1 cut(s) 127
Eam1104I CTCTTC 1 cut(s) 320
EarI CTCTTC 1 cut(s) 320
Eco130I CCWWGG 1 cut(s) 40
Eco32I GATATC 1 cut(s) 181
Eco81I CCTNAGG 1 cut(s) 278
EcoNI CCTNNNNNAGG 1 cut(s) 391
EcoRV GATATC 1 cut(s) 181
EcoT14I CCWWGG 1 cut(s) 40
ErhI CCWWGG 1 cut(s) 40
FaeI CATG 2 cut(s) 160, 523
FaiI YATR 5 cut(s) 49, 146, 158, 507, 521
FaqI GGGAC 2 cut(s) 388, 425
FatI CATG 2 cut(s) 156, 519
Fnu4HI GCNGC 3 cut(s) 75, 273, 336
Fsp4HI GCNGC 3 cut(s) 75, 273, 336
FspBI CTAG 1 cut(s) 393
GluI GCNGC 3 cut(s) 75, 273, 336
HaeIII GGCC 4 cut(s) 39, 107, 129, 284
HgaI GACGC 1 cut(s) 511
Hin1II CATG 2 cut(s) 160, 523
HphI GGTGA 1 cut(s) 334
Hpy166II GTNNAC 1 cut(s) 421
Hpy188I TCNGA 4 cut(s) 98, 199, 221, 383
Hpy188III TCNNGA 3 cut(s) 184, 203, 346
Hpy8I GTNNAC 1 cut(s) 421
HpyAV CCTTC 2 cut(s) 303, 355
HpyCH4V TGCA 4 cut(s) 32, 74, 236, 356
HpyF10VI GCNNNNNNNGC 5 cut(s) 74, 113, 281, 362, 502
HpyF3I CTNAG 1 cut(s) 278
Hsp92II CATG 2 cut(s) 160, 523
Kzo9I GATC 4 cut(s) 139, 199, 216, 383
LpnPI CCDG 4 cut(s) 105, 143, 331, 419
Lsp1109I GCAGC 3 cut(s) 86, 259, 347
LweI GCATC 1 cut(s) 61
MaeI CTAG 1 cut(s) 393
MaeIII GTNAC 2 cut(s) 515, 528
MalI GATC 4 cut(s) 141, 201, 218, 385
MboI GATC 4 cut(s) 139, 199, 216, 383
MboII GAAGA 1 cut(s) 337
MfeI CAATTG 1 cut(s) 33
MflI RGATCY 3 cut(s) 139, 199, 383
MhlI GDGCHC 1 cut(s) 89
MlsI TGGCCA 1 cut(s) 129
MluCI AATT 3 cut(s) 33, 376, 535
MluNI TGGCCA 1 cut(s) 129
MnlI CCTC 6 cut(s) 237, 321, 397, 453, 485, 492
Mox20I TGGCCA 1 cut(s) 129
MscI TGGCCA 1 cut(s) 129
MseI TTAA 4 cut(s) 21, 161, 213, 538
Msp20I TGGCCA 1 cut(s) 129
MspCI CTTAAG 1 cut(s) 212
MunI CAATTG 1 cut(s) 33
MwoI GCNNNNNNNGC 5 cut(s) 74, 113, 281, 362, 502
NdeII GATC 4 cut(s) 139, 199, 216, 383
NlaIII CATG 2 cut(s) 160, 523
NlaIV GGNNCC 2 cut(s) 141, 385
NspV TTCGAA 1 cut(s) 427
PflMI CCANNNNNTGG 1 cut(s) 136
PkrI GCNGC 3 cut(s) 76, 274, 337
PspN4I GGNNCC 2 cut(s) 141, 385
PspPI GGNCC 2 cut(s) 105, 282
PsuI RGATCY 3 cut(s) 139, 199, 383
RsaI GTAC 1 cut(s) 410
RsaNI GTAC 1 cut(s) 409
SaqAI TTAA 4 cut(s) 21, 161, 213, 538
SatI GCNGC 3 cut(s) 75, 273, 336
Sau3AI GATC 4 cut(s) 139, 199, 216, 383
Sau96I GGNCC 2 cut(s) 105, 282
SduI GDGCHC 1 cut(s) 89
SetI ASST 4 cut(s) 70, 248, 295, 324
SfaNI GCATC 1 cut(s) 61
SfuI TTCGAA 1 cut(s) 427
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
Sse9I AATT 3 cut(s) 33, 376, 535
SspMI CTAG 1 cut(s) 393
StyI CCWWGG 1 cut(s) 40
TaqI TCGA 2 cut(s) 185, 427
TasI AATT 3 cut(s) 33, 376, 535
Tru1I TTAA 4 cut(s) 21, 161, 213, 538
Tru9I TTAA 4 cut(s) 21, 161, 213, 538
TseI GCWGC 3 cut(s) 74, 272, 335
TspDTI ATGAA 2 cut(s) 82, 374
Van91I CCANNNNNTGG 1 cut(s) 136
Vha464I CTTAAG 1 cut(s) 212
XagI CCTNNNNNAGG 1 cut(s) 391
XapI RAATTY 1 cut(s) 376
XspI CTAG 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.