RchiOBHm_Chr5g0028341

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000200
Physical Location & Seq
Reverse (-)
22166376 .. 22167710
1335 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30779

Sequence Viewer

Length: 1335 bp
ATGGCATTAGCGGTGAAGATTGAGGTTCTTCACAAAGAAAGAATTACACCATCCTCTCCAACTCCTCACCACCTTAGAATTTTCAGCCTCTCAACTTTTGATCAGTTTTCTCCTGCACTTTATTTCCCTCTAATCCTCTTCTATCCCAACAATAGTGATATTCATGAGGTCAATAATATTGATCCCCAATGTTTGGTTGTTGAAAGAACCAAGCTTCTGAAAAGATCACTATCCGAAACCTTAAGTCGCTTCTACCCCTTTGCAGGAAGAATCCATGATCATGCTTCAGTCTGTTGCAATGACAAGGGAGCAATGTTTCTTGAAGCTCAGGTCAACTGTCCCATATCAAGGGCTTTGGACAAACCCGATCCTGGTTTTGTTAAGGAGTTGGTTCCTAATTTACAACAATCTACTGAAGGAGACATCGGCCATGATCTTCTACTAGTCCAGGCCAACTTCTTTGAATGTGGTGGAATCGCAATCGGATTCAACGTTTCACATAAGATCATCGATGCCTTCACACTTAGTACATTCCTCAATAGTTGGTCTGCAACTTCCCGTGGTCTGCAACTTCCTCCACATCAATATGTTGCTGCAGCTTCTCGTTTCCCATCACTTGATTTGTTCAAGCCACCGCCACCGTTTGTGAAGATTGCTAGAGAGAGGTGTACAACAACGAGGTTCTTGTTTGAATCCTCTAAGATTGAATCTCTGAAGGCGGAAGCTGCCAGTGCTGCCGTGCAAAATCCTTCGAGAGTCGAAGTCGTGTCAGCACTGATTTGGAAATGTGCGATGAAAGCATCCACTGCAAACTCGGATTCTGCAAGACCACCATCAACAGCATGGTTGCAAACTGTGAACATGCGGAAAATATTGGGGCAACCATCTGCGGAGAACTTGATGGGGAACCTTTTGGGTTTCTTTGCAGTAATATCTATGAAAGGCGAAGGTGAGGCTGATCTTCAAGGCTTGGTTGCTGCAATGAGGAAGGGGTATAAAGAACTTAAGATGAAGTATGGTGCTAATGGAGTTGGTGTGGACGATGTAAGTAAACTCCTGAAAGAGTATGGTGAGGTGTTGCAAAGGGATGACATAGAGTGTTATTGCTCCACCAGTTGGTGCAGGTTGCCTTTTTATGAAACCAATTTTGGATGGGGAAAGCCATTGATGAGTAGTCCGGCAATTGAAGAAATCAAGAATTTAACTACGCTGATGGATACGAGTGATGGACGTGGCATTGAAGCACGCTTGACTTTGAAAGAAGAAGACATGGCCATATTTGAAAAAAATGAGGAGCTGCTTGCATATGCTTCTCTAAATCCCACCGTCATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

444

Amino Acids

49.25

Weight (kDa)

6.18

Isoelectric Point (pI)

46.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 6 - 433 9.7e-81 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1113
AccB7I CCANNNNNTGG 2 cut(s) 193, 1116
AciI CCGC 5 cut(s) 11, 635, 719, 865, 890
AclI AACGTT 1 cut(s) 492
AclWI GGATC 2 cut(s) 176, 362
AcoI YGGCCR 2 cut(s) 427, 1272
AcsI RAATTY 2 cut(s) 78, 1198
AcuI CTGAAG 3 cut(s) 270, 435, 734
AfaI GTAC 2 cut(s) 529, 670
AfiI CCNNNNNNNGG 5 cut(s) 193, 263, 348, 371, 1116
AflII CTTAAG 2 cut(s) 241, 1004
AhlI ACTAGT 1 cut(s) 442
AjiI CACGTC 1 cut(s) 1232
AjnI CCWGG 2 cut(s) 370, 447
AjuI GAANNNNNNNTTGG 2 cut(s) 1131, 1163
AluBI AGCT 5 cut(s) 214, 326, 599, 725, 1297
AluI AGCT 5 cut(s) 214, 326, 599, 725, 1297
Alw26I GTCTC 1 cut(s) 414
AlwI GGATC 2 cut(s) 176, 362
AoxI GGCC 3 cut(s) 427, 450, 1272
ApeKI GCWGC 6 cut(s) 593, 596, 725, 734, 977, 1297
ApoI RAATTY 2 cut(s) 78, 1198
AsuHPI GGTGA 4 cut(s) 25, 59, 962, 1082
BalI TGGCCA 1 cut(s) 1274
BbsI GAAGAC 1 cut(s) 1272
BbvI GCAGC 6 cut(s) 580, 608, 712, 721, 964, 1284
BccI CCATC 8 cut(s) 58, 619, 841, 892, 895, 1146, 1207, 1220
BceAI ACGGC 1 cut(s) 722
BciT130I CCWGG 2 cut(s) 372, 449
BciVI GTATCC 1 cut(s) 1210
BclI TGATCA 2 cut(s) 100, 277
BcoDI GTCTC 1 cut(s) 414
BcuI ACTAGT 1 cut(s) 442
BfaI CTAG 2 cut(s) 443, 657
BfmI CTRYAG 1 cut(s) 594
BfrI CTTAAG 2 cut(s) 241, 1004
BfuAI ACCTGC 1 cut(s) 1113
BfuI GTATCC 1 cut(s) 1210
BisI GCNGC 6 cut(s) 594, 597, 726, 735, 978, 1298
BlsI GCNGC 6 cut(s) 595, 598, 727, 736, 979, 1299
Bme1390I CCNGG 2 cut(s) 372, 449
BmgBI CACGTC 1 cut(s) 1232
BmiI GGNNCC 2 cut(s) 393, 908
BmrFI CCNGG 2 cut(s) 372, 449
BmsI GCATC 2 cut(s) 502, 809
BpiI GAAGAC 1 cut(s) 1272
Bpu10I CCTNAGC 1 cut(s) 327
Bsa29I ATCGAT 1 cut(s) 510
BsaBI GATNNNNATC 1 cut(s) 229
BsaJI CCNNGG 1 cut(s) 559
BsaXI ACNNNNNCTCC 2 cut(s) 1020, 1050
Bsc4I CCNNNNNNNGG 5 cut(s) 193, 263, 348, 371, 1116
Bse1I ACTGG 2 cut(s) 729, 1113
Bse3DI GCAATG 3 cut(s) 304, 318, 987
Bse8I GATNNNNATC 1 cut(s) 229
BseBI CCWGG 2 cut(s) 372, 449
BseCI ATCGAT 1 cut(s) 510
BseDI CCNNGG 1 cut(s) 559
BseGI GGATG 4 cut(s) 50, 800, 1093, 1157
BseJI GATNNNNATC 1 cut(s) 229
BseLI CCNNNNNNNGG 5 cut(s) 193, 263, 348, 371, 1116
BseMI GCAATG 3 cut(s) 304, 318, 987
BseMII CTCAG 1 cut(s) 341
BseNI ACTGG 2 cut(s) 729, 1113
BseRI GAGGAG 2 cut(s) 54, 1307
BseXI GCAGC 6 cut(s) 580, 608, 712, 721, 964, 1284
BsgI GTGCAG 2 cut(s) 99, 1141
BshFI GGCC 3 cut(s) 429, 452, 1274
BshVI ATCGAT 1 cut(s) 510
BsiSI CCGG 1 cut(s) 1178
BslFI GGGAC 1 cut(s) 324
BslI CCNNNNNNNGG 5 cut(s) 193, 263, 348, 371, 1116
BsmAI GTCTC 1 cut(s) 414
BsmFI GGGAC 1 cut(s) 324
BsnI GGCC 3 cut(s) 429, 452, 1274
Bsp1407I TGTACA 1 cut(s) 668
Bsp143I GATC 8 cut(s) 100, 181, 224, 277, 367, 433, 504, 958
BspACI CCGC 5 cut(s) 11, 635, 719, 865, 890
BspANI GGCC 3 cut(s) 429, 452, 1274
BspCNI CTCAG 1 cut(s) 340
BspDI ATCGAT 1 cut(s) 510
BspHI TCATGA 1 cut(s) 163
BspLI GGNNCC 2 cut(s) 393, 908
BspMAI CTGCAG 1 cut(s) 598
BspMI ACCTGC 1 cut(s) 1113
BspPI GGATC 2 cut(s) 176, 362
BspTI CTTAAG 2 cut(s) 241, 1004
BsrDI GCAATG 3 cut(s) 304, 318, 987
BsrGI TGTACA 1 cut(s) 668
BsrI ACTGG 2 cut(s) 729, 1113
BssECI CCNNGG 1 cut(s) 559
BssMI GATC 8 cut(s) 100, 181, 224, 277, 367, 433, 504, 958
Bst2UI CCWGG 2 cut(s) 372, 449
Bst4CI ACNGT 4 cut(s) 338, 642, 856, 1327
Bst6I CTCTTC 1 cut(s) 143
BstAFI CTTAAG 2 cut(s) 241, 1004
BstAPI GCANNNNNTGC 1 cut(s) 806
BstAUI TGTACA 1 cut(s) 668
BstC8I GCNNGC 2 cut(s) 1246, 1302
BstDEI CTNAG 4 cut(s) 74, 327, 524, 699
BstDSI CCRYGG 1 cut(s) 559
BstF5I GGATG 4 cut(s) 50, 800, 1093, 1157
BstKTI GATC 8 cut(s) 103, 184, 227, 280, 370, 436, 507, 961
BstMAI GTCTC 1 cut(s) 414
BstMBI GATC 8 cut(s) 100, 181, 224, 277, 367, 433, 504, 958
BstMWI GCNNNNNNNGC 5 cut(s) 725, 731, 734, 797, 806
BstNI CCWGG 2 cut(s) 372, 449
BstNSI RCATGY 1 cut(s) 865
BstSCI CCNGG 2 cut(s) 370, 447
BstSFI CTRYAG 1 cut(s) 594
BstV1I GCAGC 6 cut(s) 580, 608, 712, 721, 964, 1284
BstV2I GAAGAC 1 cut(s) 1272
Bsu15I ATCGAT 1 cut(s) 510
BsuI GTATCC 1 cut(s) 1210
BsuRI GGCC 3 cut(s) 429, 452, 1274
BsuTUI ATCGAT 1 cut(s) 510
BtgI CCRYGG 1 cut(s) 559
BtgZI GCGATG 1 cut(s) 806
BtrI CACGTC 1 cut(s) 1232
BtsCI GGATG 4 cut(s) 50, 800, 1093, 1157
BtsI GCAGTG 1 cut(s) 804
BtsIMutI CAGTG 3 cut(s) 736, 773, 804
BveI ACCTGC 1 cut(s) 1113
Cac8I GCNNGC 2 cut(s) 1246, 1302
CciI TCATGA 1 cut(s) 163
ClaI ATCGAT 1 cut(s) 510
Csp6I GTAC 2 cut(s) 528, 669
CviAII CATG 7 cut(s) 164, 275, 281, 431, 843, 862, 1270
CviQI GTAC 2 cut(s) 528, 669
DdeI CTNAG 4 cut(s) 74, 327, 524, 699
DpnI GATC 8 cut(s) 102, 183, 226, 279, 369, 435, 506, 960
DpnII GATC 8 cut(s) 100, 181, 224, 277, 367, 433, 504, 958
EaeI YGGCCR 2 cut(s) 427, 1272
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
EciI GGCGGA 1 cut(s) 734
Eco57I CTGAAG 3 cut(s) 270, 435, 734
EcoRII CCWGG 2 cut(s) 370, 447
FaeI CATG 7 cut(s) 167, 278, 284, 434, 846, 865, 1273
FaqI GGGAC 1 cut(s) 324
FatI CATG 7 cut(s) 163, 274, 280, 430, 842, 861, 1269
FauNDI CATATG 1 cut(s) 1306
FbaI TGATCA 2 cut(s) 100, 277
Fnu4HI GCNGC 6 cut(s) 594, 597, 726, 735, 978, 1298
FokI GGATG 4 cut(s) 37, 787, 1100, 1164
Fsp4HI GCNGC 6 cut(s) 594, 597, 726, 735, 978, 1298
FspBI CTAG 2 cut(s) 443, 657
GluI GCNGC 6 cut(s) 594, 597, 726, 735, 978, 1298
HaeIII GGCC 3 cut(s) 429, 452, 1274
HapII CCGG 1 cut(s) 1178
Hin1II CATG 7 cut(s) 167, 278, 284, 434, 846, 865, 1273
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HindIII AAGCTT 1 cut(s) 212
HinfI GANTC 7 cut(s) 270, 474, 486, 692, 707, 756, 818
HpaII CCGG 1 cut(s) 1178
HphI GGTGA 4 cut(s) 25, 59, 962, 1082
Hpy166II GTNNAC 5 cut(s) 334, 669, 859, 1039, 1052
Hpy188I TCNGA 5 cut(s) 219, 235, 485, 714, 817
Hpy188III TCNNGA 5 cut(s) 164, 320, 753, 1057, 1195
Hpy8I GTNNAC 5 cut(s) 334, 669, 859, 1039, 1052
HpyAV CCTTC 6 cut(s) 410, 526, 709, 759, 941, 982
HpyCH4III ACNGT 4 cut(s) 338, 642, 856, 1327
HpyCH4IV ACGT 2 cut(s) 492, 1231
HpyF10VI GCNNNNNNNGC 5 cut(s) 725, 731, 734, 797, 806
HpyF3I CTNAG 4 cut(s) 74, 327, 524, 699
HpySE526I ACGT 2 cut(s) 492, 1231
Hsp92II CATG 7 cut(s) 167, 278, 284, 434, 846, 865, 1273
Ksp22I TGATCA 2 cut(s) 100, 277
Kzo9I GATC 8 cut(s) 100, 181, 224, 277, 367, 433, 504, 958
LmnI GCTCC 3 cut(s) 308, 1112, 1294
Lsp1109I GCAGC 6 cut(s) 580, 608, 712, 721, 964, 1284
LweI GCATC 2 cut(s) 502, 809
MaeI CTAG 2 cut(s) 443, 657
MaeII ACGT 2 cut(s) 492, 1231
MalI GATC 8 cut(s) 102, 183, 226, 279, 369, 435, 506, 960
MboI GATC 8 cut(s) 100, 181, 224, 277, 367, 433, 504, 958
MfeI CAATTG 1 cut(s) 1182
MlsI TGGCCA 1 cut(s) 1274
MluCI AATT 6 cut(s) 42, 78, 397, 1144, 1182, 1198
MluNI TGGCCA 1 cut(s) 1274
MlyI GAGTC 1 cut(s) 765
MmeI TCCRAC 1 cut(s) 83
Mox20I TGGCCA 1 cut(s) 1274
MscI TGGCCA 1 cut(s) 1274
MseI TTAA 4 cut(s) 242, 381, 1005, 1202
MslI CAYNNNNRTG 2 cut(s) 279, 585
Msp20I TGGCCA 1 cut(s) 1274
MspCI CTTAAG 2 cut(s) 241, 1004
MspI CCGG 1 cut(s) 1178
MspR9I CCNGG 2 cut(s) 372, 449
MunI CAATTG 1 cut(s) 1182
MvaI CCWGG 2 cut(s) 372, 449
MwoI GCNNNNNNNGC 5 cut(s) 725, 731, 734, 797, 806
NdeI CATATG 1 cut(s) 1306
NdeII GATC 8 cut(s) 100, 181, 224, 277, 367, 433, 504, 958
NlaIII CATG 7 cut(s) 167, 278, 284, 434, 846, 865, 1273
NlaIV GGNNCC 2 cut(s) 393, 908
NspI RCATGY 1 cut(s) 865
PagI TCATGA 1 cut(s) 163
PcsI WCGNNNNNNNCGW 1 cut(s) 489
PfeI GAWTC 6 cut(s) 270, 474, 486, 692, 707, 818
PflMI CCANNNNNTGG 2 cut(s) 193, 1116
PkrI GCNGC 6 cut(s) 595, 598, 727, 736, 979, 1299
PleI GAGTC 1 cut(s) 764
PpsI GAGTC 1 cut(s) 764
Psp1406I AACGTT 1 cut(s) 492
Psp6I CCWGG 2 cut(s) 370, 447
PspGI CCWGG 2 cut(s) 370, 447
PspN4I GGNNCC 2 cut(s) 393, 908
PstI CTGCAG 1 cut(s) 598
RsaI GTAC 2 cut(s) 529, 670
RsaNI GTAC 2 cut(s) 528, 669
RseI CAYNNNNRTG 2 cut(s) 279, 585
SaqAI TTAA 4 cut(s) 242, 381, 1005, 1202
SatI GCNGC 6 cut(s) 594, 597, 726, 735, 978, 1298
Sau3AI GATC 8 cut(s) 100, 181, 224, 277, 367, 433, 504, 958
SchI GAGTC 1 cut(s) 765
ScrFI CCNGG 2 cut(s) 372, 449
SfaNI GCATC 2 cut(s) 502, 809
SfcI CTRYAG 1 cut(s) 594
SmiMI CAYNNNNRTG 2 cut(s) 279, 585
SmlI CTYRAG 2 cut(s) 241, 1004
SmoI CTYRAG 2 cut(s) 241, 1004
SpeI ACTAGT 1 cut(s) 442
Sse9I AATT 6 cut(s) 42, 78, 397, 1144, 1182, 1198
SsiI CCGC 5 cut(s) 11, 635, 719, 865, 890
SspI AATATT 2 cut(s) 178, 873
SspMI CTAG 2 cut(s) 443, 657
StyD4I CCNGG 2 cut(s) 370, 447
TaaI ACNGT 4 cut(s) 338, 642, 856, 1327
TaiI ACGT 2 cut(s) 495, 1234
TaqI TCGA 3 cut(s) 510, 752, 759
TasI AATT 6 cut(s) 42, 78, 397, 1144, 1182, 1198
TatI WGTACW 2 cut(s) 527, 668
TfiI GAWTC 6 cut(s) 270, 474, 486, 692, 707, 818
Tru1I TTAA 4 cut(s) 242, 381, 1005, 1202
Tru9I TTAA 4 cut(s) 242, 381, 1005, 1202
TscAI CASTG 3 cut(s) 736, 780, 811
TseI GCWGC 6 cut(s) 593, 596, 725, 734, 977, 1297
TspDTI ATGAA 5 cut(s) 152, 809, 953, 1025, 1152
TspRI CASTG 3 cut(s) 736, 780, 811
Van91I CCANNNNNTGG 2 cut(s) 193, 1116
Vha464I CTTAAG 2 cut(s) 241, 1004
XapI RAATTY 2 cut(s) 78, 1198
XceI RCATGY 1 cut(s) 865
XcmI CCANNNNNNNNNTGG 1 cut(s) 840
XspI CTAG 2 cut(s) 443, 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.