Rh5AG177800

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000200
Physical Location & Seq
Reverse (-)
19858219 .. 19859028
810 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG177800.1

Sequence Viewer

Length: 810 bp
ATGTTCAAGCCAACTGCTTTAAGTGTGGTGGAATTGGCCTTGGCATATGTCTCTCACAAGATAGCTGATGCAGCCACATTGAGCACATTCATCAGAAGTTGGGCCAATAATGGTTCTGGGATTGGCCAGAAAGTGGATCCTATATTCAACACCGTGTCAATAACCCCACCAAGAGATATCTCGATGACTCCACCAGATCTTGAAAATCTTAAGATCAGAGAACACAAATCTGCAACGAAGAGGTTTGTATTCAATGGCTCAAAGATTGCCGCTCTTAGGGCCAAAGCACCTTCTGTGAGTGTCAAACAACCAACAAAGGTGGAGAGGGTAGCAGCACTCATCTGGAAATGTGCAATGAAGGCTTCAAGGACAAATTTTGGATCCTCATCTAGGCTATCGTCCCTGTACCAAAATGTGAACATTCGAAACAGAACATTCGCTCCCCTACCAAAAAACTCTGTCGGGAAGTTTGTTGGGTTCTTTATTGCGAGGGCAGAGGACACAGAGGCAGAGTTACATGGCTTGGTTACTGAATTAAGGAAAGGCAGTGAAGAATTTTGCAAGAAAGCAAAAAGACTACCACTGAGTGAGGATATTTTGGTGATAAGCGAGCCTCAAAACGAGGCTATAAGAATGCTAACCAGTGATGGCATGGACTTCTATGTGTGCACAAGTTGGTTTAGGTTTCCACTATACGAGGGTGCAGATTTTGGGTGCGGAAAACCAATTTGGGTGAGCTCAGCTATTCCAACTGCCAAGAATATGGTATATCTGATGGATACAAAAGGCCGTGATGGAATGGAGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

269

Amino Acids

29.76

Weight (kDa)

9.55

Isoelectric Point (pI)

29.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 17 - 265 7.1e-36 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 133
AccBSI CCGCTC 1 cut(s) 272
AciI CCGC 2 cut(s) 270, 717
AclWI GGATC 4 cut(s) 131, 144, 375, 388
AcoI YGGCCR 1 cut(s) 124
AcsI RAATTY 2 cut(s) 373, 554
AdeI CACNNNGTG 1 cut(s) 587
AfaI GTAC 1 cut(s) 407
AfiI CCNNNNNNNGG 3 cut(s) 133, 276, 390
AflII CTTAAG 1 cut(s) 209
AgsI TTSAA 5 cut(s) 7, 148, 203, 253, 366
AjuI GAANNNNNNNTTGG 2 cut(s) 712, 744
AloI GAACNNNNNNTCC 2 cut(s) 424, 456
AluBI AGCT 3 cut(s) 65, 738, 743
AluI AGCT 3 cut(s) 65, 738, 743
Alw21I GWGCWC 3 cut(s) 86, 671, 740
Alw26I GTCTC 1 cut(s) 55
Alw44I GTGCAC 1 cut(s) 667
AlwI GGATC 4 cut(s) 131, 144, 375, 388
AoxI GGCC 5 cut(s) 36, 102, 124, 279, 787
ApaLI GTGCAC 1 cut(s) 667
ApeKI GCWGC 2 cut(s) 71, 332
ApoI RAATTY 2 cut(s) 373, 554
AspS9I GGNCC 2 cut(s) 102, 279
AsuHPI GGTGA 2 cut(s) 613, 745
AsuII TTCGAA 1 cut(s) 424
BaeGI GKGCMC 1 cut(s) 671
BalI TGGCCA 1 cut(s) 126
BamHI GGATCC 2 cut(s) 136, 380
BanII GRGCYC 1 cut(s) 740
Bbv12I GWGCWC 3 cut(s) 86, 671, 740
BbvI GCAGC 2 cut(s) 83, 344
BccI CCATC 3 cut(s) 641, 769, 788
BceAI ACGGC 1 cut(s) 774
BciVI GTATCC 1 cut(s) 772
BcoDI GTCTC 1 cut(s) 55
BfaI CTAG 2 cut(s) 390, 808
BfrI CTTAAG 1 cut(s) 209
BfuI GTATCC 1 cut(s) 772
BglII AGATCT 1 cut(s) 196
BisI GCNGC 3 cut(s) 72, 270, 333
BlpI GCTNAGC 1 cut(s) 739
BlsI GCNGC 3 cut(s) 73, 271, 334
BmgT120I GGNCC 2 cut(s) 102, 279
BmiI GGNNCC 2 cut(s) 138, 382
BmsI GCATC 1 cut(s) 58
Bpu1102I GCTNAGC 1 cut(s) 739
Bpu14I TTCGAA 1 cut(s) 424
BsaBI GATNNNNATC 1 cut(s) 385
BsaJI CCNNGG 1 cut(s) 39
BsaXI ACNNNNNCTCC 2 cut(s) 424, 454
Bsc4I CCNNNNNNNGG 3 cut(s) 133, 276, 390
Bse1I ACTGG 1 cut(s) 642
Bse3DI GCAATG 1 cut(s) 360
Bse8I GATNNNNATC 1 cut(s) 385
BseDI CCNNGG 1 cut(s) 39
BseJI GATNNNNATC 1 cut(s) 385
BseLI CCNNNNNNNGG 3 cut(s) 133, 276, 390
BseMI GCAATG 1 cut(s) 360
BseMII CTCAG 2 cut(s) 575, 753
BseNI ACTGG 1 cut(s) 642
BseSI GKGCMC 1 cut(s) 671
BseXI GCAGC 2 cut(s) 83, 344
BsgI GTGCAG 1 cut(s) 723
BshFI GGCC 5 cut(s) 38, 104, 126, 281, 789
BsiHKAI GWGCWC 3 cut(s) 86, 671, 740
BslFI GGGAC 1 cut(s) 385
BslI CCNNNNNNNGG 3 cut(s) 133, 276, 390
BsmAI GTCTC 1 cut(s) 55
BsmFI GGGAC 1 cut(s) 385
BsmI GAATGC 1 cut(s) 639
BsnI GGCC 5 cut(s) 38, 104, 126, 281, 789
Bsp119I TTCGAA 1 cut(s) 424
Bsp1286I GDGCHC 3 cut(s) 86, 671, 740
Bsp143I GATC 4 cut(s) 136, 196, 213, 380
Bsp1720I GCTNAGC 1 cut(s) 739
BspACI CCGC 2 cut(s) 270, 717
BspANI GGCC 5 cut(s) 38, 104, 126, 281, 789
BspCNI CTCAG 2 cut(s) 576, 752
BspLI GGNNCC 2 cut(s) 138, 382
BspPI GGATC 4 cut(s) 131, 144, 375, 388
BspT104I TTCGAA 1 cut(s) 424
BspTI CTTAAG 1 cut(s) 209
BsrBI CCGCTC 1 cut(s) 272
BsrDI GCAATG 1 cut(s) 360
BsrI ACTGG 1 cut(s) 642
BssECI CCNNGG 1 cut(s) 39
BssMI GATC 4 cut(s) 136, 196, 213, 380
BssT1I CCWWGG 1 cut(s) 39
Bst4CI ACNGT 1 cut(s) 154
Bst6I CTCTTC 1 cut(s) 233
BstAFI CTTAAG 1 cut(s) 209
BstBI TTCGAA 1 cut(s) 424
BstC8I GCNNGC 1 cut(s) 611
BstDEI CTNAG 3 cut(s) 275, 584, 739
BstENI CCTNNNNNAGG 1 cut(s) 388
BstKTI GATC 4 cut(s) 139, 199, 216, 383
BstMAI GTCTC 1 cut(s) 55
BstMBI GATC 4 cut(s) 136, 196, 213, 380
BstMWI GCNNNNNNNGC 3 cut(s) 71, 278, 359
BstSLI GKGCMC 1 cut(s) 671
BstV1I GCAGC 2 cut(s) 83, 344
BstX2I RGATCY 3 cut(s) 136, 196, 380
BstXI CCANNNNNNTGG 1 cut(s) 763
BstYI RGATCY 3 cut(s) 136, 196, 380
BsuI GTATCC 1 cut(s) 772
BsuRI GGCC 5 cut(s) 38, 104, 126, 281, 789
BtsI GCAGTG 1 cut(s) 553
BtsIMutI CAGTG 3 cut(s) 553, 581, 649
Cac8I GCNNGC 1 cut(s) 611
Cfr13I GGNCC 2 cut(s) 102, 279
Csp6I GTAC 1 cut(s) 406
CspCI CAANNNNNGTGG 2 cut(s) 300, 335
CviAII CATG 2 cut(s) 518, 652
CviQI GTAC 1 cut(s) 406
DdeI CTNAG 3 cut(s) 275, 584, 739
DpnI GATC 4 cut(s) 138, 198, 215, 382
DpnII GATC 4 cut(s) 136, 196, 213, 380
DraIII CACNNNGTG 1 cut(s) 587
EaeI YGGCCR 1 cut(s) 124
Eam1104I CTCTTC 1 cut(s) 233
EarI CTCTTC 1 cut(s) 233
Ecl136II GAGCTC 1 cut(s) 738
Eco130I CCWWGG 1 cut(s) 39
Eco24I GRGCYC 1 cut(s) 740
Eco32I GATATC 1 cut(s) 178
Eco53kI GAGCTC 1 cut(s) 738
EcoICRI GAGCTC 1 cut(s) 738
EcoNI CCTNNNNNAGG 1 cut(s) 388
EcoRV GATATC 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 39
EcoT38I GRGCYC 1 cut(s) 740
ErhI CCWWGG 1 cut(s) 39
FaeI CATG 2 cut(s) 521, 655
FaqI GGGAC 1 cut(s) 385
FatI CATG 2 cut(s) 517, 651
FauNDI CATATG 1 cut(s) 46
Fnu4HI GCNGC 3 cut(s) 72, 270, 333
FriOI GRGCYC 1 cut(s) 740
Fsp4HI GCNGC 3 cut(s) 72, 270, 333
FspBI CTAG 2 cut(s) 390, 808
GluI GCNGC 3 cut(s) 72, 270, 333
HaeIII GGCC 5 cut(s) 38, 104, 126, 281, 789
Hin1II CATG 2 cut(s) 521, 655
HinfI GANTC 2 cut(s) 187, 803
HphI GGTGA 2 cut(s) 613, 745
Hpy166II GTNNAC 2 cut(s) 418, 669
Hpy188I TCNGA 3 cut(s) 95, 218, 774
Hpy188III TCNNGA 4 cut(s) 181, 200, 343, 463
Hpy8I GTNNAC 2 cut(s) 418, 669
HpyAV CCTTC 2 cut(s) 300, 352
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4V TGCA 6 cut(s) 71, 233, 353, 561, 669, 704
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 278, 359
HpyF3I CTNAG 3 cut(s) 275, 584, 739
Hsp92II CATG 2 cut(s) 521, 655
Kzo9I GATC 4 cut(s) 136, 196, 213, 380
LmnI GCTCC 1 cut(s) 445
LpnPI CCDG 6 cut(s) 102, 140, 207, 328, 416, 655
Lsp1109I GCAGC 2 cut(s) 83, 344
LweI GCATC 1 cut(s) 58
MaeI CTAG 2 cut(s) 390, 808
MaeIII GTNAC 2 cut(s) 513, 526
MalI GATC 4 cut(s) 138, 198, 215, 382
MbiI CCGCTC 1 cut(s) 272
MboI GATC 4 cut(s) 136, 196, 213, 380
MboII GAAGA 2 cut(s) 250, 563
MflI RGATCY 3 cut(s) 136, 196, 380
MhlI GDGCHC 3 cut(s) 86, 671, 740
MlsI TGGCCA 1 cut(s) 126
MluCI AATT 5 cut(s) 32, 373, 533, 554, 726
MluNI TGGCCA 1 cut(s) 126
MlyI GAGTC 1 cut(s) 181
MmeI TCCRAC 1 cut(s) 773
Mox20I TGGCCA 1 cut(s) 126
MscI TGGCCA 1 cut(s) 126
MseI TTAA 3 cut(s) 20, 210, 536
Msp20I TGGCCA 1 cut(s) 126
MspCI CTTAAG 1 cut(s) 209
Mva1269I GAATGC 1 cut(s) 639
MwoI GCNNNNNNNGC 3 cut(s) 71, 278, 359
NdeI CATATG 1 cut(s) 46
NdeII GATC 4 cut(s) 136, 196, 213, 380
NlaIII CATG 2 cut(s) 521, 655
NlaIV GGNNCC 2 cut(s) 138, 382
NspV TTCGAA 1 cut(s) 424
PctI GAATGC 1 cut(s) 639
PflMI CCANNNNNTGG 1 cut(s) 133
PkrI GCNGC 3 cut(s) 73, 271, 334
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
Psp124BI GAGCTC 1 cut(s) 740
PspN4I GGNNCC 2 cut(s) 138, 382
PspPI GGNCC 2 cut(s) 102, 279
PsuI RGATCY 3 cut(s) 136, 196, 380
RsaI GTAC 1 cut(s) 407
RsaNI GTAC 1 cut(s) 406
SacI GAGCTC 1 cut(s) 740
SaqAI TTAA 3 cut(s) 20, 210, 536
SatI GCNGC 3 cut(s) 72, 270, 333
Sau3AI GATC 4 cut(s) 136, 196, 213, 380
Sau96I GGNCC 2 cut(s) 102, 279
SchI GAGTC 1 cut(s) 181
SduI GDGCHC 3 cut(s) 86, 671, 740
SetI ASST 7 cut(s) 67, 245, 292, 321, 686, 740, 745
SfaNI GCATC 1 cut(s) 58
SfuI TTCGAA 1 cut(s) 424
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 5 cut(s) 32, 373, 533, 554, 726
SsiI CCGC 2 cut(s) 270, 717
SspMI CTAG 2 cut(s) 390, 808
SstI GAGCTC 1 cut(s) 740
StyI CCWWGG 1 cut(s) 39
TaaI ACNGT 1 cut(s) 154
TaqI TCGA 2 cut(s) 182, 424
TasI AATT 5 cut(s) 32, 373, 533, 554, 726
TauI GCSGC 1 cut(s) 272
Tru1I TTAA 3 cut(s) 20, 210, 536
Tru9I TTAA 3 cut(s) 20, 210, 536
TscAI CASTG 3 cut(s) 553, 588, 649
TseI GCWGC 2 cut(s) 71, 332
TspDTI ATGAA 2 cut(s) 79, 371
TspRI CASTG 3 cut(s) 553, 588, 649
Van91I CCANNNNNTGG 1 cut(s) 133
Vha464I CTTAAG 1 cut(s) 209
VneI GTGCAC 1 cut(s) 667
XagI CCTNNNNNAGG 1 cut(s) 388
XapI RAATTY 2 cut(s) 373, 554
XcmI CCANNNNNNNNNTGG 1 cut(s) 649
XspI CTAG 2 cut(s) 390, 808
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.