Rw1G007730

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000200
Physical Location & Seq
Reverse (-)
16389361 .. 16390690
1330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G007730.1

Sequence Viewer

Length: 1281 bp
ATGTCTTCAGAAATGATTGTTGAAGTAATCAACAAGGAAACAATTACACCATCATCTTCTACTCTTCACCACCTTACAACTTCCAGCCTCTCTGTTTTTGATCAGTTTATACAAGATTGTTATGTCCCCCTACTTCTCTTCTATCCCAACAATAGTACTACTAATCATAAGATCAATACAGTTGATGACCACCACTCTATGATTTCTGAAAGATCCAAGCTTCTTAAAACTTCATTATCTGAAACCCTTATCCGCTTCTATCCCTTTGCTGGAAGAATATTTAGCCACAATAACATTCTTTCAATCTGTTGCAATGATAATGGGGTGGCATTTATCCAAACCCAGGTCAATTGTCCCATATCAAAGGTTTTGGAAAAGCACCATCCTCAGACACTAAATCAATTACTTCCCAAAGATATAGAATCGACAACTGAAAGCACAAGCTATCTCCTATTAATTCAAGCCAACTTCTTTGAATGTGGTGGACTTGCAATTGGGGTTAGCATTTCACATAAGATCGCGGATGGCTTCACACTCGGAACATTCATTCGTAACTGGGCAGCAATGAGCCTTGGTTCTGATATAGCGGCTTTTCCAGCTGCGGAGTTTGGTATTCCAACATCTCTTTACCCCCCACAAGATTTGAGATTTGTATTTGATGCCTCAAATATTGTACGTCTCAAGTCTAAAGCCACTAGTGCCACCGTTCCAAATCCAACTCGTGTTGAAGTAGTGTTAGCACTTATTTGGAAATGTGCAATGGAAGCTTCAAGATCAAACTTGGGTTTTACAAGGCCGGCCCAGCTGTTTCTTGCAGCAAACATGCGGAAAGTATTGGAGCATCCCACTTTAATGGGAAATCTTGTAGGAGTTGTACATATAGTAAAGACACGAGAAAGTGATGCAACTCTTCAAAGCTTGGTTGCTATACTACGGCAAACCATTGAGGAATTTAAAGTGAAATATTGTAATGGAGTTAGTGGGGATGATATCTGCCAACATTTTAATGAGCACAGAGATTTAATGGGTAAGGATGATATAAATAGCTATGGAATTACCAGTTGGTGCAGGTTTGGCTTCTATGAAGCCAATTTTGGATGGGGAAAGCCATCTTGGGTCACTATTCCAGGTATGCCATTCAAGAATGTAATTGTATTAATTGACACAAAAGATGGTGAAGGCATGGAAGCGATCGTGAGTTTTAAAGAAAAAGACATGGCTGTAATTGAAACCAATAAGGAGCTGCTTGCATATGCTTCTCGTAATCCCACTGTTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

426

Amino Acids

47.41

Weight (kDa)

6.23

Isoelectric Point (pI)

37.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 6 - 193 5.4e-41 Transferase family
Transferase PF02458 217 - 415 6.1e-32 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1059
AccII CGCG 1 cut(s) 521
AciI CCGC 5 cut(s) 253, 521, 587, 602, 826
AclWI GGATC 1 cut(s) 207
AcsI RAATTY 1 cut(s) 950
AfaI GTAC 3 cut(s) 157, 675, 876
AfiI CCNNNNNNNGG 2 cut(s) 269, 343
AgsI TTSAA 9 cut(s) 23, 303, 461, 476, 728, 771, 914, 1141, 1229
AhlI ACTAGT 1 cut(s) 695
AjnI CCWGG 2 cut(s) 342, 1126
AjuI GAANNNNNNNTTGG 6 cut(s) 1045, 1077, 1077, 1096, 1109, 1128
AluBI AGCT 8 cut(s) 220, 444, 599, 767, 805, 918, 1047, 1243
AluI AGCT 8 cut(s) 220, 444, 599, 767, 805, 918, 1047, 1243
Alw21I GWGCWC 1 cut(s) 1014
Alw26I GTCTC 1 cut(s) 683
AlwI GGATC 1 cut(s) 207
AoxI GGCC 2 cut(s) 794, 798
ApeKI GCWGC 4 cut(s) 560, 599, 815, 1243
ApoI RAATTY 1 cut(s) 950
AseI ATTAAT 2 cut(s) 455, 1157
AspS9I GGNCC 1 cut(s) 799
AsuHPI GGTGA 2 cut(s) 59, 1187
BauI CACGAG 2 cut(s) 720, 891
Bbv12I GWGCWC 1 cut(s) 1014
BbvI GCAGC 4 cut(s) 572, 586, 827, 1230
BccI CCATC 6 cut(s) 58, 390, 518, 1092, 1117, 1166
BceAI ACGGC 1 cut(s) 950
BciT130I CCWGG 2 cut(s) 344, 1128
BclI TGATCA 1 cut(s) 100
BcoDI GTCTC 1 cut(s) 683
BcuI ACTAGT 1 cut(s) 695
BfaI CTAG 1 cut(s) 696
BfuAI ACCTGC 1 cut(s) 1059
BisI GCNGC 5 cut(s) 561, 588, 600, 816, 1244
BlsI GCNGC 5 cut(s) 562, 589, 601, 817, 1245
BmcAI AGTACT 1 cut(s) 157
Bme1390I CCNGG 2 cut(s) 344, 1128
BmgT120I GGNCC 1 cut(s) 799
BmrFI CCNGG 2 cut(s) 344, 1128
BmrI ACTGGG 1 cut(s) 565
BmsI GCATC 3 cut(s) 649, 850, 892
BmuI ACTGGG 1 cut(s) 565
BpuEI CTTGAG 1 cut(s) 665
BsaJI CCNNGG 2 cut(s) 342, 571
Bsc4I CCNNNNNNNGG 2 cut(s) 269, 343
Bse118I RCCGGY 1 cut(s) 796
Bse1I ACTGG 2 cut(s) 560, 1059
Bse3DI GCAATG 3 cut(s) 319, 570, 765
BseBI CCWGG 2 cut(s) 344, 1128
BseDI CCNNGG 2 cut(s) 342, 571
BseGI GGATG 6 cut(s) 382, 529, 841, 991, 1039, 1103
BseLI CCNNNNNNNGG 2 cut(s) 269, 343
BseMI GCAATG 3 cut(s) 319, 570, 765
BseMII CTCAG 1 cut(s) 401
BseNI ACTGG 2 cut(s) 560, 1059
BseXI GCAGC 4 cut(s) 572, 586, 827, 1230
BseYI CCCAGC 1 cut(s) 801
BsgI GTGCAG 1 cut(s) 1087
Bsh1236I CGCG 1 cut(s) 521
Bsh1285I CGRYCG 1 cut(s) 1194
BshFI GGCC 2 cut(s) 796, 800
BsiEI CGRYCG 1 cut(s) 1194
BsiHKAI GWGCWC 1 cut(s) 1014
BsiSI CCGG 1 cut(s) 797
BslFI GGGAC 2 cut(s) 110, 339
BslI CCNNNNNNNGG 2 cut(s) 269, 343
BsmAI GTCTC 1 cut(s) 683
BsmBI CGTCTC 1 cut(s) 683
BsmFI GGGAC 2 cut(s) 110, 339
BsnI GGCC 2 cut(s) 796, 800
Bsp1286I GDGCHC 1 cut(s) 1014
Bsp1407I TGTACA 1 cut(s) 874
Bsp143I GATC 6 cut(s) 100, 171, 212, 516, 773, 1191
BspACI CCGC 5 cut(s) 253, 521, 587, 602, 826
BspANI GGCC 2 cut(s) 796, 800
BspCNI CTCAG 1 cut(s) 400
BspFNI CGCG 1 cut(s) 521
BspMI ACCTGC 1 cut(s) 1059
BspPI GGATC 1 cut(s) 207
BsrDI GCAATG 3 cut(s) 319, 570, 765
BsrFI RCCGGY 1 cut(s) 796
BsrGI TGTACA 1 cut(s) 874
BsrI ACTGG 2 cut(s) 560, 1059
BssAI RCCGGY 1 cut(s) 796
BssECI CCNNGG 2 cut(s) 342, 571
BssMI GATC 6 cut(s) 100, 171, 212, 516, 773, 1191
BssSI CACGAG 2 cut(s) 720, 891
BssT1I CCWWGG 1 cut(s) 571
Bst2BI CACGAG 2 cut(s) 720, 891
Bst2UI CCWGG 2 cut(s) 344, 1128
Bst4CI ACNGT 3 cut(s) 181, 706, 1273
Bst6I CTCTTC 3 cut(s) 69, 143, 915
BstAUI TGTACA 1 cut(s) 874
BstC8I GCNNGC 2 cut(s) 798, 1248
BstDEI CTNAG 1 cut(s) 387
BstF5I GGATG 6 cut(s) 382, 529, 841, 991, 1039, 1103
BstFNI CGCG 1 cut(s) 521
BstKTI GATC 6 cut(s) 103, 174, 215, 519, 776, 1194
BstMAI GTCTC 1 cut(s) 683
BstMBI GATC 6 cut(s) 100, 171, 212, 516, 773, 1191
BstMCI CGRYCG 1 cut(s) 1194
BstMWI GCNNNNNNNGC 5 cut(s) 596, 698, 764, 802, 1074
BstNI CCWGG 2 cut(s) 344, 1128
BstNSI RCATGY 1 cut(s) 826
BstSCI CCNGG 2 cut(s) 342, 1126
BstUI CGCG 1 cut(s) 521
BstV1I GCAGC 4 cut(s) 572, 586, 827, 1230
BstX2I RGATCY 1 cut(s) 212
BstXI CCANNNNNNTGG 1 cut(s) 853
BstYI RGATCY 1 cut(s) 212
BsuRI GGCC 2 cut(s) 796, 800
BtsCI GGATG 6 cut(s) 382, 529, 841, 991, 1039, 1103
BtsIMutI CAGTG 1 cut(s) 1269
BveI ACCTGC 1 cut(s) 1059
Cac8I GCNNGC 2 cut(s) 798, 1248
Cfr10I RCCGGY 1 cut(s) 796
Cfr13I GGNCC 1 cut(s) 799
Csp6I GTAC 3 cut(s) 156, 674, 875
CspCI CAANNNNNGTGG 2 cut(s) 624, 659
CviAII CATG 3 cut(s) 823, 1183, 1216
CviQI GTAC 3 cut(s) 156, 674, 875
DdeI CTNAG 1 cut(s) 387
DpnI GATC 6 cut(s) 102, 173, 214, 518, 775, 1193
DpnII GATC 6 cut(s) 100, 171, 212, 516, 773, 1191
DraI TTTAAA 2 cut(s) 955, 1204
Eam1104I CTCTTC 3 cut(s) 69, 143, 915
EarI CTCTTC 3 cut(s) 69, 143, 915
Eco130I CCWWGG 1 cut(s) 571
Eco32I GATATC 1 cut(s) 991
EcoRII CCWGG 2 cut(s) 342, 1126
EcoRV GATATC 1 cut(s) 991
EcoT14I CCWWGG 1 cut(s) 571
ErhI CCWWGG 1 cut(s) 571
Esp3I CGTCTC 1 cut(s) 683
FaeI CATG 3 cut(s) 826, 1186, 1219
FaqI GGGAC 2 cut(s) 110, 339
FatI CATG 3 cut(s) 822, 1182, 1215
FauNDI CATATG 1 cut(s) 1252
FbaI TGATCA 1 cut(s) 100
Fnu4HI GCNGC 5 cut(s) 561, 588, 600, 816, 1244
FokI GGATG 6 cut(s) 369, 536, 828, 998, 1046, 1110
FseI GGCCGGCC 1 cut(s) 800
Fsp4HI GCNGC 5 cut(s) 561, 588, 600, 816, 1244
FspBI CTAG 1 cut(s) 696
GluI GCNGC 5 cut(s) 561, 588, 600, 816, 1244
GsaI CCCAGC 1 cut(s) 805
HaeIII GGCC 2 cut(s) 796, 800
HapII CCGG 1 cut(s) 797
Hin1II CATG 3 cut(s) 826, 1186, 1219
HindIII AAGCTT 3 cut(s) 218, 765, 916
HinfI GANTC 1 cut(s) 422
HpaII CCGG 1 cut(s) 797
HphI GGTGA 2 cut(s) 59, 1187
Hpy166II GTNNAC 1 cut(s) 485
Hpy188I TCNGA 6 cut(s) 10, 208, 241, 390, 539, 580
Hpy188III TCNNGA 3 cut(s) 771, 1141, 1195
Hpy8I GTNNAC 1 cut(s) 485
HpyAV CCTTC 1 cut(s) 1172
HpyCH4III ACNGT 3 cut(s) 181, 706, 1273
HpyCH4IV ACGT 1 cut(s) 676
HpyCH4V TGCA 7 cut(s) 312, 491, 758, 815, 905, 1068, 1250
HpyF10VI GCNNNNNNNGC 5 cut(s) 596, 698, 764, 802, 1074
HpyF3I CTNAG 1 cut(s) 387
HpySE526I ACGT 1 cut(s) 676
Hsp92II CATG 3 cut(s) 826, 1186, 1219
KroI GCCGGC 1 cut(s) 796
KroNI GCCGGC 1 cut(s) 798
Ksp22I TGATCA 1 cut(s) 100
Kzo9I GATC 6 cut(s) 100, 171, 212, 516, 773, 1191
LmnI GCTCC 2 cut(s) 838, 1240
Lsp1109I GCAGC 4 cut(s) 572, 586, 827, 1230
LweI GCATC 3 cut(s) 649, 850, 892
MaeI CTAG 1 cut(s) 696
MaeII ACGT 1 cut(s) 676
MaeIII GTNAC 2 cut(s) 551, 1117
MalI GATC 6 cut(s) 102, 173, 214, 518, 775, 1193
MboI GATC 6 cut(s) 100, 171, 212, 516, 773, 1191
MboII GAAGA 5 cut(s) 48, 56, 130, 285, 902
MfeI CAATTG 2 cut(s) 349, 492
MflI RGATCY 1 cut(s) 212
MhlI GDGCHC 1 cut(s) 1014
MmeI TCCRAC 2 cut(s) 641, 740
MnlI CCTC 4 cut(s) 98, 396, 673, 940
MroNI GCCGGC 1 cut(s) 796
MseI TTAA 8 cut(s) 225, 455, 851, 954, 1005, 1022, 1157, 1203
MslI CAYNNNNRTG 2 cut(s) 851, 1005
MspA1I CMGCKG 2 cut(s) 599, 805
MspI CCGG 1 cut(s) 797
MspR9I CCNGG 2 cut(s) 344, 1128
MunI CAATTG 2 cut(s) 349, 492
MvaI CCWGG 2 cut(s) 344, 1128
MvnI CGCG 1 cut(s) 521
MwoI GCNNNNNNNGC 5 cut(s) 596, 698, 764, 802, 1074
NaeI GCCGGC 1 cut(s) 798
NdeI CATATG 1 cut(s) 1252
NdeII GATC 6 cut(s) 100, 171, 212, 516, 773, 1191
NgoMIV GCCGGC 1 cut(s) 796
NlaIII CATG 3 cut(s) 826, 1186, 1219
NmuCI GTSAC 1 cut(s) 1117
NspI RCATGY 1 cut(s) 826
PdiI GCCGGC 1 cut(s) 798
PfeI GAWTC 1 cut(s) 422
PkrI GCNGC 5 cut(s) 562, 589, 601, 817, 1245
Ple19I CGATCG 1 cut(s) 1194
PshBI ATTAAT 2 cut(s) 455, 1157
Psp6I CCWGG 2 cut(s) 342, 1126
PspFI CCCAGC 1 cut(s) 801
PspGI CCWGG 2 cut(s) 342, 1126
PspPI GGNCC 1 cut(s) 799
PsuI RGATCY 1 cut(s) 212
PvuI CGATCG 1 cut(s) 1194
PvuII CAGCTG 2 cut(s) 599, 805
RigI GGCCGGCC 1 cut(s) 800
RsaI GTAC 3 cut(s) 157, 675, 876
RsaNI GTAC 3 cut(s) 156, 674, 875
RseI CAYNNNNRTG 2 cut(s) 851, 1005
SaqAI TTAA 8 cut(s) 225, 455, 851, 954, 1005, 1022, 1157, 1203
SatI GCNGC 5 cut(s) 561, 588, 600, 816, 1244
Sau3AI GATC 6 cut(s) 100, 171, 212, 516, 773, 1191
Sau96I GGNCC 1 cut(s) 799
ScaI AGTACT 1 cut(s) 157
ScrFI CCNGG 2 cut(s) 344, 1128
SduI GDGCHC 1 cut(s) 1014
SfaNI GCATC 3 cut(s) 649, 850, 892
SmiMI CAYNNNNRTG 2 cut(s) 851, 1005
SmlI CTYRAG 1 cut(s) 680
SmoI CTYRAG 1 cut(s) 680
SpeI ACTAGT 1 cut(s) 695
SsiI CCGC 5 cut(s) 253, 521, 587, 602, 826
SspI AATATT 3 cut(s) 279, 670, 965
SspMI CTAG 1 cut(s) 696
StyD4I CCNGG 2 cut(s) 342, 1126
StyI CCWWGG 1 cut(s) 571
TaaI ACNGT 3 cut(s) 181, 706, 1273
TaiI ACGT 1 cut(s) 679
TaqI TCGA 1 cut(s) 425
TatI WGTACW 2 cut(s) 155, 874
TauI GCSGC 1 cut(s) 590
TfiI GAWTC 1 cut(s) 422
Tru1I TTAA 8 cut(s) 225, 455, 851, 954, 1005, 1022, 1157, 1203
Tru9I TTAA 8 cut(s) 225, 455, 851, 954, 1005, 1022, 1157, 1203
TscAI CASTG 1 cut(s) 1276
TseFI GTSAC 1 cut(s) 1117
TseI GCWGC 4 cut(s) 560, 599, 815, 1243
Tsp45I GTSAC 1 cut(s) 1117
TspDTI ATGAA 3 cut(s) 222, 535, 1098
TspRI CASTG 1 cut(s) 1276
VspI ATTAAT 2 cut(s) 455, 1157
XapI RAATTY 1 cut(s) 950
XceI RCATGY 1 cut(s) 826
XspI CTAG 1 cut(s) 696
ZrmI AGTACT 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.