pycom16g06450

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0000200
Physical Location & Seq
Forward (+)
4140298 .. 4140749
452 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g06450.1

Sequence Viewer

Length: 339 bp
ATGACAGGCCATCTTCTACTTGTCCACGCCAACTTCTTTGAATGTGGTGGATTGGCAATCGGAGTCAGCATGTCACATGAGGCCGCCGATGTATGTATGGGCAGCACATTTATTAAAACCTGGGCTGCAACTGTTGTGGAAGTCGCTATAGACAATTGTACTTCAACAAGGAGGTTTTTGTTTGATGGCTCAAAGATTGCCACTCTCAAGTCCAAAGCTGCCAGGGCCACGGTACCAAACCCAACCCGTGTTGTAGTAGCGTTGACGCTCATTTGGAAACGCGCTATGGAAGCATCAAGATCAAACTCGGGTTATGTAAGCCCGTCGACATCGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00073 ko00940 ko00941 ko00945 ko01100 ko01110 map00073 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

113

Amino Acids

11.94

Weight (kDa)

9.13

Isoelectric Point (pI)

41.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 5 - 48 3.4e-09 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 232
AccB1I GGYRCC 1 cut(s) 232
AccI GTMKAC 1 cut(s) 326
AccII CGCG 1 cut(s) 282
AciI CCGC 1 cut(s) 84
AfaI GTAC 2 cut(s) 160, 234
AgsI TTSAA 2 cut(s) 41, 165
AjnI CCWGG 2 cut(s) 119, 221
AluBI AGCT 1 cut(s) 218
AluI AGCT 1 cut(s) 218
Ama87I CYCGRG 1 cut(s) 307
AoxI GGCC 3 cut(s) 7, 81, 225
ApeKI GCWGC 3 cut(s) 102, 125, 218
Asp718I GGTACC 1 cut(s) 232
AspLEI GCGC 1 cut(s) 284
AspS9I GGNCC 1 cut(s) 225
AvaI CYCGRG 1 cut(s) 307
BanI GGYRCC 1 cut(s) 232
BbvI GCAGC 3 cut(s) 112, 114, 205
BccI CCATC 2 cut(s) 18, 179
BciT130I CCWGG 2 cut(s) 121, 223
BfmI CTRYAG 1 cut(s) 147
BisI GCNGC 4 cut(s) 84, 103, 126, 219
BlsI GCNGC 4 cut(s) 85, 104, 127, 220
Bme1390I CCNGG 2 cut(s) 121, 223
BmeT110I CYCGRG 1 cut(s) 307
BmgT120I GGNCC 1 cut(s) 225
BmiI GGNNCC 1 cut(s) 234
BmrFI CCNGG 2 cut(s) 121, 223
BmsI GCATC 1 cut(s) 302
BpuEI CTTGAG 1 cut(s) 191
BsaJI CCNNGG 3 cut(s) 120, 222, 228
BseBI CCWGG 2 cut(s) 121, 223
BseDI CCNNGG 3 cut(s) 120, 222, 228
BseXI GCAGC 3 cut(s) 112, 114, 205
Bsh1236I CGCG 1 cut(s) 282
BshFI GGCC 3 cut(s) 9, 83, 227
BshNI GGYRCC 1 cut(s) 232
BsiHKCI CYCGRG 1 cut(s) 307
BsnI GGCC 3 cut(s) 9, 83, 227
BsoBI CYCGRG 1 cut(s) 307
Bsp143I GATC 1 cut(s) 299
BspACI CCGC 1 cut(s) 84
BspANI GGCC 3 cut(s) 9, 83, 227
BspFNI CGCG 1 cut(s) 282
BspLI GGNNCC 1 cut(s) 234
BspT107I GGYRCC 1 cut(s) 232
BssECI CCNNGG 3 cut(s) 120, 222, 228
BssMI GATC 1 cut(s) 299
Bst2UI CCWGG 2 cut(s) 121, 223
Bst4CI ACNGT 2 cut(s) 133, 232
BstDSI CCRYGG 1 cut(s) 228
BstFNI CGCG 1 cut(s) 282
BstHHI GCGC 1 cut(s) 284
BstKTI GATC 1 cut(s) 302
BstMBI GATC 1 cut(s) 299
BstMWI GCNNNNNNNGC 2 cut(s) 224, 290
BstNI CCWGG 2 cut(s) 121, 223
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 2 cut(s) 119, 221
BstSFI CTRYAG 1 cut(s) 147
BstUI CGCG 1 cut(s) 282
BstV1I GCAGC 3 cut(s) 112, 114, 205
BsuRI GGCC 3 cut(s) 9, 83, 227
BtgI CCRYGG 1 cut(s) 228
CfoI GCGC 1 cut(s) 284
Cfr13I GGNCC 1 cut(s) 225
CseI GACGC 1 cut(s) 274
Csp6I GTAC 2 cut(s) 159, 233
CspCI CAANNNNNGTGG 2 cut(s) 117, 152
CviAII CATG 2 cut(s) 70, 77
CviJI RGCY 7 cut(s) 9, 83, 125, 189, 218, 227, 321
CviKI_1 RGCY 7 cut(s) 9, 83, 125, 189, 218, 227, 321
CviQI GTAC 2 cut(s) 159, 233
DpnI GATC 1 cut(s) 301
DpnII GATC 1 cut(s) 299
Eco88I CYCGRG 1 cut(s) 307
EcoRII CCWGG 2 cut(s) 119, 221
FaeI CATG 2 cut(s) 73, 80
FaiI YATR 7 cut(s) 71, 78, 94, 98, 149, 287, 315
FatI CATG 2 cut(s) 69, 76
FblI GTMKAC 1 cut(s) 326
Fnu4HI GCNGC 4 cut(s) 84, 103, 126, 219
Fsp4HI GCNGC 4 cut(s) 84, 103, 126, 219
GlaI GCGC 1 cut(s) 283
GluI GCNGC 4 cut(s) 84, 103, 126, 219
HaeIII GGCC 3 cut(s) 9, 83, 227
HgaI GACGC 1 cut(s) 274
HhaI GCGC 1 cut(s) 284
Hin1II CATG 2 cut(s) 73, 80
Hin6I GCGC 1 cut(s) 282
HinP1I GCGC 1 cut(s) 282
HincII GTYRAC 2 cut(s) 264, 327
HindII GTYRAC 2 cut(s) 264, 327
HinfI GANTC 1 cut(s) 63
Hpy166II GTNNAC 3 cut(s) 25, 264, 327
Hpy188I TCNGA 1 cut(s) 62
Hpy188III TCNNGA 1 cut(s) 297
Hpy8I GTNNAC 3 cut(s) 25, 264, 327
Hpy99I CGWCG 1 cut(s) 328
HpyCH4III ACNGT 2 cut(s) 133, 232
HpyCH4V TGCA 1 cut(s) 128
HpyF10VI GCNNNNNNNGC 2 cut(s) 224, 290
Hsp92II CATG 2 cut(s) 73, 80
HspAI GCGC 1 cut(s) 282
KpnI GGTACC 1 cut(s) 236
Kzo9I GATC 1 cut(s) 299
LpnPI CCDG 4 cut(s) 106, 133, 208, 235
Lsp1109I GCAGC 3 cut(s) 112, 114, 205
LweI GCATC 1 cut(s) 302
MaeIII GTNAC 1 cut(s) 72
MalI GATC 1 cut(s) 301
MboI GATC 1 cut(s) 299
MboII GAAGA 1 cut(s) 5
MfeI CAATTG 1 cut(s) 154
MluCI AATT 1 cut(s) 154
MlyI GAGTC 1 cut(s) 72
MnlI CCTC 2 cut(s) 73, 165
MseI TTAA 1 cut(s) 114
MspR9I CCNGG 2 cut(s) 121, 223
MunI CAATTG 1 cut(s) 154
MvaI CCWGG 2 cut(s) 121, 223
MvnI CGCG 1 cut(s) 282
MwoI GCNNNNNNNGC 2 cut(s) 224, 290
NdeII GATC 1 cut(s) 299
NlaIII CATG 2 cut(s) 73, 80
NlaIV GGNNCC 1 cut(s) 234
NmuCI GTSAC 1 cut(s) 72
NspI RCATGY 1 cut(s) 73
PkrI GCNGC 4 cut(s) 85, 104, 127, 220
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
Psp6I CCWGG 2 cut(s) 119, 221
PspGI CCWGG 2 cut(s) 119, 221
PspN4I GGNNCC 1 cut(s) 234
PspPI GGNCC 1 cut(s) 225
RsaI GTAC 2 cut(s) 160, 234
RsaNI GTAC 2 cut(s) 159, 233
SalI GTCGAC 1 cut(s) 325
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 4 cut(s) 84, 103, 126, 219
Sau3AI GATC 1 cut(s) 299
Sau96I GGNCC 1 cut(s) 225
SchI GAGTC 1 cut(s) 72
ScrFI CCNGG 2 cut(s) 121, 223
SetI ASST 3 cut(s) 122, 176, 220
SfaNI GCATC 1 cut(s) 302
SfcI CTRYAG 1 cut(s) 147
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 1 cut(s) 154
SsiI CCGC 1 cut(s) 84
StyD4I CCNGG 2 cut(s) 119, 221
TaaI ACNGT 2 cut(s) 133, 232
TaqI TCGA 1 cut(s) 326
TasI AATT 1 cut(s) 154
TatI WGTACW 1 cut(s) 158
TauI GCSGC 1 cut(s) 86
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TseFI GTSAC 1 cut(s) 72
TseI GCWGC 3 cut(s) 102, 125, 218
Tsp45I GTSAC 1 cut(s) 72
XceI RCATGY 1 cut(s) 73
XmiI GTMKAC 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.