Rh4DG194000

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000200
Physical Location & Seq
Reverse (-)
38035790 .. 38036134
345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG194000.1

Sequence Viewer

Length: 345 bp
ATGAGCCTTGGCACTAATGTAGTGGCTTTTCCAACTATAGAATTTGGTGTTGTAGCATCTGTTTATCCACCACAAGATTTATTTATCAAGTCATTGCAAACTTCTGGGGAATATGTTTATGGAGATTGTGTAAAAAGGAGATTTGTTTTTTATGCCTCAAATATTCTATGTCTCAAGTCAAAAGCCGCCAGTGCCACCGTTCCAAATCCAACTCGTGTTGAAGTAGTGACAGCTCTTATTTGGAAATGCGCAATGGACGCATCAAGATCAAACTTAGGTTTTACAATGCCAGCCATGCTGTTTCTAACAGCAAACATGCGGAAAGTATTGGGGCATCCCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

114

Amino Acids

12.47

Weight (kDa)

9.37

Isoelectric Point (pI)

51.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 32 - 111 2.1e-12 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 250
AciI CCGC 2 cut(s) 186, 319
AcsI RAATTY 1 cut(s) 41
AgsI TTSAA 1 cut(s) 221
AluBI AGCT 1 cut(s) 233
AluI AGCT 1 cut(s) 233
Alw26I GTCTC 1 cut(s) 176
ApoI RAATTY 1 cut(s) 41
AspLEI GCGC 1 cut(s) 251
BauI CACGAG 1 cut(s) 213
BcoDI GTCTC 1 cut(s) 176
BfmI CTRYAG 1 cut(s) 36
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
BmsI GCATC 2 cut(s) 65, 269
BpuEI CTTGAG 1 cut(s) 158
BsaJI CCNNGG 1 cut(s) 7
BsaXI ACNNNNNCTCC 2 cut(s) 114, 144
Bse1I ACTGG 1 cut(s) 189
Bse3DI GCAATG 2 cut(s) 92, 258
BseDI CCNNGG 1 cut(s) 7
BseGI GGATG 1 cut(s) 334
BseMI GCAATG 2 cut(s) 92, 258
BseNI ACTGG 1 cut(s) 189
BsmAI GTCTC 1 cut(s) 176
Bsp143I GATC 1 cut(s) 266
BspACI CCGC 2 cut(s) 186, 319
BsrDI GCAATG 2 cut(s) 92, 258
BsrI ACTGG 1 cut(s) 189
BssECI CCNNGG 1 cut(s) 7
BssMI GATC 1 cut(s) 266
BssSI CACGAG 1 cut(s) 213
BssT1I CCWWGG 1 cut(s) 7
Bst2BI CACGAG 1 cut(s) 213
Bst4CI ACNGT 1 cut(s) 199
BstC8I GCNNGC 1 cut(s) 291
BstDEI CTNAG 1 cut(s) 274
BstF5I GGATG 1 cut(s) 334
BstHHI GCGC 1 cut(s) 251
BstKTI GATC 1 cut(s) 269
BstMAI GTCTC 1 cut(s) 176
BstMBI GATC 1 cut(s) 266
BstMWI GCNNNNNNNGC 3 cut(s) 191, 257, 295
BstNSI RCATGY 1 cut(s) 319
BstSFI CTRYAG 1 cut(s) 36
BtsCI GGATG 1 cut(s) 334
BtsIMutI CAGTG 1 cut(s) 196
Cac8I GCNNGC 1 cut(s) 291
CfoI GCGC 1 cut(s) 251
CseI GACGC 1 cut(s) 266
CviAII CATG 2 cut(s) 295, 316
CviJI RGCY 5 cut(s) 6, 26, 185, 233, 293
CviKI_1 RGCY 5 cut(s) 6, 26, 185, 233, 293
DdeI CTNAG 1 cut(s) 274
DpnI GATC 1 cut(s) 268
DpnII GATC 1 cut(s) 266
Eco130I CCWWGG 1 cut(s) 7
EcoT14I CCWWGG 1 cut(s) 7
ErhI CCWWGG 1 cut(s) 7
FaeI CATG 2 cut(s) 298, 319
FaiI YATR 7 cut(s) 38, 114, 120, 153, 169, 296, 317
FatI CATG 2 cut(s) 294, 315
Fnu4HI GCNGC 1 cut(s) 186
FokI GGATG 1 cut(s) 321
Fsp4HI GCNGC 1 cut(s) 186
FspI TGCGCA 1 cut(s) 250
GlaI GCGC 1 cut(s) 250
GluI GCNGC 1 cut(s) 186
HgaI GACGC 1 cut(s) 266
HhaI GCGC 1 cut(s) 251
Hin1II CATG 2 cut(s) 298, 319
Hin6I GCGC 1 cut(s) 249
HinP1I GCGC 1 cut(s) 249
Hpy188III TCNNGA 1 cut(s) 264
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4V TGCA 1 cut(s) 97
HpyF10VI GCNNNNNNNGC 3 cut(s) 191, 257, 295
HpyF3I CTNAG 1 cut(s) 274
Hsp92II CATG 2 cut(s) 298, 319
HspAI GCGC 1 cut(s) 249
Kzo9I GATC 1 cut(s) 266
LpnPI CCDG 3 cut(s) 90, 202, 303
LweI GCATC 2 cut(s) 65, 269
MaeIII GTNAC 1 cut(s) 226
MalI GATC 1 cut(s) 268
MboI GATC 1 cut(s) 266
MluCI AATT 1 cut(s) 41
MmeI TCCRAC 2 cut(s) 56, 233
MnlI CCTC 1 cut(s) 166
MseI TTAA 1 cut(s) 343
MwoI GCNNNNNNNGC 3 cut(s) 191, 257, 295
NdeII GATC 1 cut(s) 266
NlaIII CATG 2 cut(s) 298, 319
NmuCI GTSAC 1 cut(s) 226
NsbI TGCGCA 1 cut(s) 250
NspI RCATGY 1 cut(s) 319
PkrI GCNGC 1 cut(s) 187
SaqAI TTAA 1 cut(s) 343
SatI GCNGC 1 cut(s) 186
Sau3AI GATC 1 cut(s) 266
SetI ASST 2 cut(s) 235, 280
SfaNI GCATC 2 cut(s) 65, 269
SfcI CTRYAG 1 cut(s) 36
SmlI CTYRAG 1 cut(s) 173
SmoI CTYRAG 1 cut(s) 173
Sse9I AATT 1 cut(s) 41
SsiI CCGC 2 cut(s) 186, 319
SspI AATATT 1 cut(s) 163
StyI CCWWGG 1 cut(s) 7
TaaI ACNGT 1 cut(s) 199
TasI AATT 1 cut(s) 41
TauI GCSGC 1 cut(s) 188
Tru1I TTAA 1 cut(s) 343
Tru9I TTAA 1 cut(s) 343
TscAI CASTG 1 cut(s) 196
TseFI GTSAC 1 cut(s) 226
Tsp45I GTSAC 1 cut(s) 226
TspRI CASTG 1 cut(s) 196
XapI RAATTY 1 cut(s) 41
XceI RCATGY 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.