Rmu_co8439139.1_g000001

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8439139.1
OG0000200
Physical Location & Seq
Reverse (-)
865 .. 1449
585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8439139.1_g000001.1.cds

Sequence Viewer

Length: 585 bp
atgttcatccgtagctgggcagcaatgtgccttggctctgatgtagtggctcttccagctacagaatttggtgttccagcatctctttacccacaacaagatttattcatcaactcattgtcaacttccagggaatatgttaatagtgaagcttgcgtcaataagagatttgtgtttgatgcctcaaatattgtacgtctcaagtctaaagccaccggtgctaccgttccaaatccaactcgtgttgaagtagtgacagcacttctctggaaatgtgcaatggaagcatcaagatcaaacttgagttttacaaggccagctgtgctgtttctagcagcaaacttgcggaaagtattgaagcatcccaatttaatgggaaatcttgtaggacatgtctttgcagcaaagacacaagaaggtgatgcaactcttcaaagcttaaatgctataatcaggaaaagcattgaggaatttaaagtgaaatatggtgagggagttagcggggatgctatttgccaaaattttaaagagcatggagatttaatggataataatgatataaataactatatctgcagcagttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

194

Amino Acids

21.28

Weight (kDa)

8.27

Isoelectric Point (pI)

39.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 346, 501
AcsI RAATTY 3 cut(s) 65, 470, 520
AfaI GTAC 1 cut(s) 195
AfiI CCNNNNNNNGG 1 cut(s) 16
AflIII ACRYGT 1 cut(s) 391
AgeI ACCGGT 1 cut(s) 215
AgsI TTSAA 3 cut(s) 248, 358, 434
AjnI CCWGG 1 cut(s) 128
AluBI AGCT 5 cut(s) 15, 59, 152, 320, 438
AluI AGCT 5 cut(s) 15, 59, 152, 320, 438
Alw26I GTCTC 1 cut(s) 203
AoxI GGCC 1 cut(s) 314
ApeKI GCWGC 4 cut(s) 20, 335, 401, 576
ApoI RAATTY 3 cut(s) 65, 470, 520
AsiGI ACCGGT 1 cut(s) 215
AsuHPI GGTGA 2 cut(s) 431, 500
BarI GAAGNNNNNNTAC 2 cut(s) 36, 68
BauI CACGAG 1 cut(s) 240
BbvI GCAGC 3 cut(s) 32, 347, 413
BciT130I CCWGG 1 cut(s) 130
BcoDI GTCTC 1 cut(s) 203
BfaI CTAG 1 cut(s) 332
BfmI CTRYAG 2 cut(s) 60, 574
BisI GCNGC 4 cut(s) 21, 336, 402, 577
BlsI GCNGC 4 cut(s) 22, 337, 403, 578
Bme1390I CCNGG 1 cut(s) 130
BmrFI CCNGG 1 cut(s) 130
BmsI GCATC 6 cut(s) 89, 169, 296, 370, 412, 496
BpuEI CTTGAG 2 cut(s) 185, 322
BsaJI CCNNGG 2 cut(s) 31, 129
BsaWI WCCGGW 1 cut(s) 215
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse118I RCCGGY 1 cut(s) 215
Bse3DI GCAATG 2 cut(s) 30, 285
BseBI CCWGG 1 cut(s) 130
BseDI CCNNGG 2 cut(s) 31, 129
BseGI GGATG 3 cut(s) 6, 361, 511
BseLI CCNNNNNNNGG 1 cut(s) 16
BseMI GCAATG 2 cut(s) 30, 285
BseXI GCAGC 3 cut(s) 32, 347, 413
BseYI CCCAGC 1 cut(s) 15
BshFI GGCC 1 cut(s) 316
BshTI ACCGGT 1 cut(s) 215
BsiSI CCGG 1 cut(s) 216
BslI CCNNNNNNNGG 1 cut(s) 16
BsmAI GTCTC 1 cut(s) 203
BsmBI CGTCTC 1 cut(s) 203
BsnI GGCC 1 cut(s) 316
Bsp143I GATC 1 cut(s) 293
BspACI CCGC 2 cut(s) 346, 501
BspANI GGCC 1 cut(s) 316
BspMAI CTGCAG 1 cut(s) 578
BspQI GCTCTTC 1 cut(s) 57
BsrDI GCAATG 2 cut(s) 30, 285
BsrFI RCCGGY 1 cut(s) 215
BssAI RCCGGY 1 cut(s) 215
BssECI CCNNGG 2 cut(s) 31, 129
BssMI GATC 1 cut(s) 293
BssSI CACGAG 1 cut(s) 240
BssT1I CCWWGG 1 cut(s) 31
Bst2BI CACGAG 1 cut(s) 240
Bst2UI CCWGG 1 cut(s) 130
Bst4CI ACNGT 1 cut(s) 226
Bst6I CTCTTC 2 cut(s) 57, 435
BstC8I GCNNGC 2 cut(s) 154, 318
BstF5I GGATG 3 cut(s) 6, 361, 511
BstKTI GATC 1 cut(s) 296
BstMAI GTCTC 1 cut(s) 203
BstMBI GATC 1 cut(s) 293
BstMWI GCNNNNNNNGC 4 cut(s) 56, 218, 284, 322
BstNI CCWGG 1 cut(s) 130
BstNSI RCATGY 1 cut(s) 395
BstSCI CCNGG 1 cut(s) 128
BstSFI CTRYAG 2 cut(s) 60, 574
BstV1I GCAGC 3 cut(s) 32, 347, 413
BstXI CCANNNNNNTGG 1 cut(s) 373
BsuRI GGCC 1 cut(s) 316
BtsCI GGATG 3 cut(s) 6, 361, 511
Cac8I GCNNGC 2 cut(s) 154, 318
Cfr10I RCCGGY 1 cut(s) 215
CseI GACGC 1 cut(s) 145
Csp6I GTAC 1 cut(s) 194
CspAI ACCGGT 1 cut(s) 215
CviAII CATG 2 cut(s) 392, 533
CviJI RGCY 9 cut(s) 15, 36, 50, 59, 152, 212, 316, 320, 438
CviKI_1 RGCY 9 cut(s) 15, 36, 50, 59, 152, 212, 316, 320, 438
CviQI GTAC 1 cut(s) 194
DpnI GATC 1 cut(s) 295
DpnII GATC 1 cut(s) 293
DraI TTTAAA 2 cut(s) 475, 526
Eam1104I CTCTTC 2 cut(s) 57, 435
EarI CTCTTC 2 cut(s) 57, 435
Eco130I CCWWGG 1 cut(s) 31
EcoRII CCWGG 1 cut(s) 128
EcoT14I CCWWGG 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 31
Esp3I CGTCTC 1 cut(s) 203
FaeI CATG 2 cut(s) 395, 536
FaiI YATR 7 cut(s) 138, 393, 449, 486, 534, 560, 570
FatI CATG 2 cut(s) 391, 532
FauI CCCGC 1 cut(s) 494
Fnu4HI GCNGC 4 cut(s) 21, 336, 402, 577
FokI GGATG 2 cut(s) 348, 518
Fsp4HI GCNGC 4 cut(s) 21, 336, 402, 577
FspBI CTAG 1 cut(s) 332
GluI GCNGC 4 cut(s) 21, 336, 402, 577
GsaI CCCAGC 1 cut(s) 19
HaeIII GGCC 1 cut(s) 316
HapII CCGG 1 cut(s) 216
HgaI GACGC 1 cut(s) 145
Hin1II CATG 2 cut(s) 395, 536
HincII GTYRAC 1 cut(s) 123
HindII GTYRAC 1 cut(s) 123
HindIII AAGCTT 2 cut(s) 150, 436
HpaII CCGG 1 cut(s) 216
HphI GGTGA 2 cut(s) 431, 500
Hpy166II GTNNAC 1 cut(s) 123
Hpy188I TCNGA 1 cut(s) 40
Hpy188III TCNNGA 3 cut(s) 268, 291, 454
Hpy8I GTNNAC 1 cut(s) 123
HpyAV CCTTC 1 cut(s) 410
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4IV ACGT 1 cut(s) 196
HpyCH4V TGCA 4 cut(s) 278, 401, 425, 576
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 218, 284, 322
HpySE526I ACGT 1 cut(s) 196
Hsp92II CATG 2 cut(s) 395, 536
Kzo9I GATC 1 cut(s) 293
LguI GCTCTTC 1 cut(s) 57
LpnPI CCDG 8 cut(s) 69, 90, 115, 142, 229, 253, 330, 439
Lsp1109I GCAGC 3 cut(s) 32, 347, 413
LweI GCATC 6 cut(s) 89, 169, 296, 370, 412, 496
MaeI CTAG 1 cut(s) 332
MaeII ACGT 1 cut(s) 196
MaeIII GTNAC 1 cut(s) 253
MalI GATC 1 cut(s) 295
MboI GATC 1 cut(s) 293
MboII GAAGA 2 cut(s) 44, 422
MluCI AATT 4 cut(s) 65, 367, 470, 520
MmeI TCCRAC 1 cut(s) 260
MnlI CCTC 3 cut(s) 193, 460, 484
MseI TTAA 6 cut(s) 141, 371, 440, 474, 525, 542
MspA1I CMGCKG 1 cut(s) 320
MspI CCGG 1 cut(s) 216
MspR9I CCNGG 1 cut(s) 130
MvaI CCWGG 1 cut(s) 130
MwoI GCNNNNNNNGC 4 cut(s) 56, 218, 284, 322
NdeII GATC 1 cut(s) 293
NlaIII CATG 2 cut(s) 395, 536
NmuCI GTSAC 1 cut(s) 253
NspI RCATGY 1 cut(s) 395
PciI ACATGT 1 cut(s) 391
PciSI GCTCTTC 1 cut(s) 57
PinAI ACCGGT 1 cut(s) 215
PkrI GCNGC 4 cut(s) 22, 337, 403, 578
PscI ACATGT 1 cut(s) 391
Psp6I CCWGG 1 cut(s) 128
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 1 cut(s) 128
PstI CTGCAG 1 cut(s) 578
PvuII CAGCTG 1 cut(s) 320
RsaI GTAC 1 cut(s) 195
RsaNI GTAC 1 cut(s) 194
SapI GCTCTTC 1 cut(s) 57
SaqAI TTAA 6 cut(s) 141, 371, 440, 474, 525, 542
SatI GCNGC 4 cut(s) 21, 336, 402, 577
Sau3AI GATC 1 cut(s) 293
ScrFI CCNGG 1 cut(s) 130
SetI ASST 7 cut(s) 17, 61, 154, 199, 322, 421, 440
SfaNI GCATC 6 cut(s) 89, 169, 296, 370, 412, 496
SfcI CTRYAG 2 cut(s) 60, 574
SgrAI CRCCGGYG 1 cut(s) 215
SmlI CTYRAG 2 cut(s) 200, 301
SmoI CTYRAG 2 cut(s) 200, 301
Sse9I AATT 4 cut(s) 65, 367, 470, 520
SsiI CCGC 2 cut(s) 346, 501
SspI AATATT 1 cut(s) 190
SspMI CTAG 1 cut(s) 332
StyD4I CCNGG 1 cut(s) 128
StyI CCWWGG 1 cut(s) 31
TaaI ACNGT 1 cut(s) 226
TaiI ACGT 1 cut(s) 199
TasI AATT 4 cut(s) 65, 367, 470, 520
Tru1I TTAA 6 cut(s) 141, 371, 440, 474, 525, 542
Tru9I TTAA 6 cut(s) 141, 371, 440, 474, 525, 542
TseFI GTSAC 1 cut(s) 253
TseI GCWGC 4 cut(s) 20, 335, 401, 576
Tsp45I GTSAC 1 cut(s) 253
TspDTI ATGAA 1 cut(s) 97
XapI RAATTY 3 cut(s) 65, 470, 520
XceI RCATGY 1 cut(s) 395
XspI CTAG 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.