Rroxscaffold_1G00051360

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000200
Physical Location & Seq
Forward (+)
72013653 .. 72014654
1002 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00051360.1

Sequence Viewer

Length: 1002 bp
ATGGGATTAGCGGTGAAGATTGAAGTTCTTCACAAAGAAAGAATTACACCATCCTCTCCAACTCCTCACCACCTTAGAATTTTCAGCCTCTCAACATTTGATCAGTTTTCTCCTGCAATTTATTTCCCTCTAATCCTCTTCTATCCCAACAATAGTGATATTCATGAGGTCAATAATATTGATCCCCAATGTTTGGTTGTTGAAAGAACCAAGCTTCTGAAAAGATCACTGTCCGAAACCCTAAGTCGCTTCTACCCCTTTGCAGGAAGAATCCAGGATCATGCTTCAGTCTATTGCAATGACAAGGGAGCAATGTTTCTTGAAGCTCAGGTCAACTGTCCCATATCAAGGGCTTTGGACAAACCCGATCTTGGTTTTGTTAAAGAGTTGGTTCCTAATTTACAATCTACTGAAGGAGACATCGGCCATGATCTTCTACTAGTCCAGGCTAACTTCTTTGAATGTGGTGGTATCGCAATCGGATTCAACGTTTCACATAGGATCATCGATGCCTTCACACTTAGTACATTCCTCAATAGTTGGTCTGCAACTTCCCGTGGTCTGCAACTTCCTCCACATCAATATGTTGCTGCAGCTTCTCGTTTCCCATCACTGGATTTGTTCAAGCCACCGCCACCGTTTGTGAAGATTGCTAAAGAGAGGTGTACAACAAGGAGGTTCTTGTTTGAATCCTCGAAGATTGAATCTCTGAAGGCTGAAGCTGCCAGTGCTGCCGTGCAAAATCCTTCGCGAGTCGAAGTCGTGTCGGCATTGATTTGGAAATGTGCGATGAAAGCATCAACTGCAAACTCGGATTCTGCAAGACCACCATCATCAGCATGGTTGCAAACTGTGAACATGCGGAAAATATTGGGGCAACAATCTGCGGAGAACTTGATGGGGAACCTTTTGGGTTTCTTTGCAGCAATATCTATGAAAGGCGAAGGTGAGGGTGATCTTCAAGGCTTGGTTGCTGCAATGAGGAAGGGGTATAAACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

333

Amino Acids

36.79

Weight (kDa)

8.84

Isoelectric Point (pI)

48.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 6 - 307 2.1e-59 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 193
AccII CGCG 1 cut(s) 751
AciI CCGC 4 cut(s) 11, 632, 862, 887
AclI AACGTT 1 cut(s) 489
AclWI GGATC 3 cut(s) 176, 285, 509
AcoI YGGCCR 1 cut(s) 424
AcsI RAATTY 1 cut(s) 78
AcuI CTGAAG 4 cut(s) 270, 432, 731, 738
AfaI GTAC 2 cut(s) 526, 667
AfiI CCNNNNNNNGG 5 cut(s) 193, 263, 348, 371, 613
AgsI TTSAA 9 cut(s) 23, 203, 323, 461, 487, 625, 689, 704, 962
AhlI ACTAGT 1 cut(s) 439
AjnI CCWGG 2 cut(s) 273, 444
AluBI AGCT 4 cut(s) 214, 326, 596, 722
AluI AGCT 4 cut(s) 214, 326, 596, 722
Alw26I GTCTC 1 cut(s) 411
AlwI GGATC 3 cut(s) 176, 285, 509
AoxI GGCC 1 cut(s) 424
ApeKI GCWGC 6 cut(s) 590, 593, 722, 731, 923, 974
ApoI RAATTY 1 cut(s) 78
Asp700I GAANNNNTTC 1 cut(s) 27
AsuHPI GGTGA 4 cut(s) 25, 59, 959, 965
BbvI GCAGC 6 cut(s) 577, 605, 709, 718, 935, 961
BccI CCATC 4 cut(s) 58, 616, 838, 892
BceAI ACGGC 1 cut(s) 719
BciT130I CCWGG 2 cut(s) 275, 446
BclI TGATCA 1 cut(s) 100
BcoDI GTCTC 1 cut(s) 411
BcuI ACTAGT 1 cut(s) 439
BfaI CTAG 1 cut(s) 440
BfmI CTRYAG 1 cut(s) 591
BisI GCNGC 6 cut(s) 591, 594, 723, 732, 924, 975
BlsI GCNGC 6 cut(s) 592, 595, 724, 733, 925, 976
Bme1390I CCNGG 2 cut(s) 275, 446
BmiI GGNNCC 2 cut(s) 393, 905
BmrFI CCNGG 2 cut(s) 275, 446
BmsI GCATC 2 cut(s) 499, 806
Bpu10I CCTNAGC 1 cut(s) 327
Bsa29I ATCGAT 1 cut(s) 507
BsaJI CCNNGG 1 cut(s) 556
Bsc4I CCNNNNNNNGG 5 cut(s) 193, 263, 348, 371, 613
Bse1I ACTGG 2 cut(s) 618, 726
Bse3DI GCAATG 3 cut(s) 304, 318, 984
BseBI CCWGG 2 cut(s) 275, 446
BseCI ATCGAT 1 cut(s) 507
BseDI CCNNGG 1 cut(s) 556
BseGI GGATG 1 cut(s) 50
BseLI CCNNNNNNNGG 5 cut(s) 193, 263, 348, 371, 613
BseMI GCAATG 3 cut(s) 304, 318, 984
BseMII CTCAG 1 cut(s) 341
BseNI ACTGG 2 cut(s) 618, 726
BseRI GAGGAG 1 cut(s) 54
BseXI GCAGC 6 cut(s) 577, 605, 709, 718, 935, 961
Bsh1236I CGCG 1 cut(s) 751
BshFI GGCC 1 cut(s) 426
BshVI ATCGAT 1 cut(s) 507
BslFI GGGAC 1 cut(s) 324
BslI CCNNNNNNNGG 5 cut(s) 193, 263, 348, 371, 613
BsmAI GTCTC 1 cut(s) 411
BsmFI GGGAC 1 cut(s) 324
BsnI GGCC 1 cut(s) 426
Bsp1407I TGTACA 1 cut(s) 665
Bsp143I GATC 8 cut(s) 100, 181, 224, 277, 367, 430, 501, 955
Bsp68I TCGCGA 1 cut(s) 751
BspACI CCGC 4 cut(s) 11, 632, 862, 887
BspANI GGCC 1 cut(s) 426
BspCNI CTCAG 1 cut(s) 340
BspDI ATCGAT 1 cut(s) 507
BspFNI CGCG 1 cut(s) 751
BspHI TCATGA 1 cut(s) 163
BspLI GGNNCC 2 cut(s) 393, 905
BspMAI CTGCAG 1 cut(s) 595
BspPI GGATC 3 cut(s) 176, 285, 509
BsrDI GCAATG 3 cut(s) 304, 318, 984
BsrGI TGTACA 1 cut(s) 665
BsrI ACTGG 2 cut(s) 618, 726
BssECI CCNNGG 1 cut(s) 556
BssMI GATC 8 cut(s) 100, 181, 224, 277, 367, 430, 501, 955
Bst2UI CCWGG 2 cut(s) 275, 446
Bst4CI ACNGT 4 cut(s) 231, 338, 639, 853
Bst6I CTCTTC 1 cut(s) 143
BstAPI GCANNNNNTGC 1 cut(s) 803
BstAUI TGTACA 1 cut(s) 665
BstDEI CTNAG 4 cut(s) 74, 242, 327, 521
BstDSI CCRYGG 1 cut(s) 556
BstF5I GGATG 1 cut(s) 50
BstFNI CGCG 1 cut(s) 751
BstKTI GATC 8 cut(s) 103, 184, 227, 280, 370, 433, 504, 958
BstMAI GTCTC 1 cut(s) 411
BstMBI GATC 8 cut(s) 100, 181, 224, 277, 367, 430, 501, 955
BstMWI GCNNNNNNNGC 5 cut(s) 722, 728, 731, 794, 803
BstNI CCWGG 2 cut(s) 275, 446
BstNSI RCATGY 1 cut(s) 862
BstSCI CCNGG 2 cut(s) 273, 444
BstSFI CTRYAG 1 cut(s) 591
BstUI CGCG 1 cut(s) 751
BstV1I GCAGC 6 cut(s) 577, 605, 709, 718, 935, 961
Bsu15I ATCGAT 1 cut(s) 507
BsuRI GGCC 1 cut(s) 426
BsuTUI ATCGAT 1 cut(s) 507
BtgI CCRYGG 1 cut(s) 556
BtgZI GCGATG 1 cut(s) 803
BtsCI GGATG 1 cut(s) 50
BtsIMutI CAGTG 3 cut(s) 227, 611, 733
BtuMI TCGCGA 1 cut(s) 751
CciI TCATGA 1 cut(s) 163
ClaI ATCGAT 1 cut(s) 507
Csp6I GTAC 2 cut(s) 525, 666
CviAII CATG 5 cut(s) 164, 281, 428, 840, 859
CviQI GTAC 2 cut(s) 525, 666
DdeI CTNAG 4 cut(s) 74, 242, 327, 521
DpnI GATC 8 cut(s) 102, 183, 226, 279, 369, 432, 503, 957
DpnII GATC 8 cut(s) 100, 181, 224, 277, 367, 430, 501, 955
EaeI YGGCCR 1 cut(s) 424
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
Eco57I CTGAAG 4 cut(s) 270, 432, 731, 738
EcoRII CCWGG 2 cut(s) 273, 444
FaeI CATG 5 cut(s) 167, 284, 431, 843, 862
FaqI GGGAC 1 cut(s) 324
FatI CATG 5 cut(s) 163, 280, 427, 839, 858
FbaI TGATCA 1 cut(s) 100
Fnu4HI GCNGC 6 cut(s) 591, 594, 723, 732, 924, 975
FokI GGATG 1 cut(s) 37
Fsp4HI GCNGC 6 cut(s) 591, 594, 723, 732, 924, 975
FspBI CTAG 1 cut(s) 440
GluI GCNGC 6 cut(s) 591, 594, 723, 732, 924, 975
HaeIII GGCC 1 cut(s) 426
Hin1II CATG 5 cut(s) 167, 284, 431, 843, 862
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HindIII AAGCTT 1 cut(s) 212
HinfI GANTC 6 cut(s) 270, 483, 689, 704, 753, 815
HphI GGTGA 4 cut(s) 25, 59, 959, 965
Hpy166II GTNNAC 3 cut(s) 334, 666, 856
Hpy188I TCNGA 5 cut(s) 219, 235, 482, 711, 814
Hpy188III TCNNGA 3 cut(s) 164, 320, 750
Hpy8I GTNNAC 3 cut(s) 334, 666, 856
HpyAV CCTTC 6 cut(s) 407, 523, 706, 756, 938, 979
HpyCH4III ACNGT 4 cut(s) 231, 338, 639, 853
HpyCH4IV ACGT 1 cut(s) 489
HpyF10VI GCNNNNNNNGC 5 cut(s) 722, 728, 731, 794, 803
HpyF3I CTNAG 4 cut(s) 74, 242, 327, 521
HpySE526I ACGT 1 cut(s) 489
Hsp92II CATG 5 cut(s) 167, 284, 431, 843, 862
Ksp22I TGATCA 1 cut(s) 100
Kzo9I GATC 8 cut(s) 100, 181, 224, 277, 367, 430, 501, 955
LmnI GCTCC 1 cut(s) 308
LpnPI CCDG 9 cut(s) 126, 249, 260, 287, 314, 431, 458, 599, 739
Lsp1109I GCAGC 6 cut(s) 577, 605, 709, 718, 935, 961
LweI GCATC 2 cut(s) 499, 806
MaeI CTAG 1 cut(s) 440
MaeII ACGT 1 cut(s) 489
MalI GATC 8 cut(s) 102, 183, 226, 279, 369, 432, 503, 957
MboI GATC 8 cut(s) 100, 181, 224, 277, 367, 430, 501, 955
MboII GAAGA 8 cut(s) 20, 28, 130, 279, 425, 658, 709, 950
MluCI AATT 4 cut(s) 42, 78, 117, 397
MlyI GAGTC 1 cut(s) 762
MmeI TCCRAC 1 cut(s) 83
MroXI GAANNNNTTC 1 cut(s) 27
MseI TTAA 1 cut(s) 381
MslI CAYNNNNRTG 2 cut(s) 582, 838
MspR9I CCNGG 2 cut(s) 275, 446
MvaI CCWGG 2 cut(s) 275, 446
MvnI CGCG 1 cut(s) 751
MwoI GCNNNNNNNGC 5 cut(s) 722, 728, 731, 794, 803
NdeII GATC 8 cut(s) 100, 181, 224, 277, 367, 430, 501, 955
NlaIII CATG 5 cut(s) 167, 284, 431, 843, 862
NlaIV GGNNCC 2 cut(s) 393, 905
NruI TCGCGA 1 cut(s) 751
NspI RCATGY 1 cut(s) 862
PagI TCATGA 1 cut(s) 163
PcsI WCGNNNNNNNCGW 1 cut(s) 486
PdmI GAANNNNTTC 1 cut(s) 27
PfeI GAWTC 5 cut(s) 270, 483, 689, 704, 815
PflMI CCANNNNNTGG 1 cut(s) 193
PfoI TCCNGGA 1 cut(s) 273
PkrI GCNGC 6 cut(s) 592, 595, 724, 733, 925, 976
PleI GAGTC 1 cut(s) 761
PpsI GAGTC 1 cut(s) 761
Psp1406I AACGTT 1 cut(s) 489
Psp6I CCWGG 2 cut(s) 273, 444
PspGI CCWGG 2 cut(s) 273, 444
PspN4I GGNNCC 2 cut(s) 393, 905
PstI CTGCAG 1 cut(s) 595
RruI TCGCGA 1 cut(s) 751
RsaI GTAC 2 cut(s) 526, 667
RsaNI GTAC 2 cut(s) 525, 666
RseI CAYNNNNRTG 2 cut(s) 582, 838
SaqAI TTAA 1 cut(s) 381
SatI GCNGC 6 cut(s) 591, 594, 723, 732, 924, 975
Sau3AI GATC 8 cut(s) 100, 181, 224, 277, 367, 430, 501, 955
SchI GAGTC 1 cut(s) 762
ScrFI CCNGG 2 cut(s) 275, 446
SfaNI GCATC 2 cut(s) 499, 806
SfcI CTRYAG 1 cut(s) 591
SmiMI CAYNNNNRTG 2 cut(s) 582, 838
SpeI ACTAGT 1 cut(s) 439
Sse9I AATT 4 cut(s) 42, 78, 117, 397
SsiI CCGC 4 cut(s) 11, 632, 862, 887
SspI AATATT 2 cut(s) 178, 870
SspMI CTAG 1 cut(s) 440
StyD4I CCNGG 2 cut(s) 273, 444
TaaI ACNGT 4 cut(s) 231, 338, 639, 853
TaiI ACGT 1 cut(s) 492
TaqI TCGA 3 cut(s) 507, 695, 756
TasI AATT 4 cut(s) 42, 78, 117, 397
TatI WGTACW 2 cut(s) 524, 665
TfiI GAWTC 5 cut(s) 270, 483, 689, 704, 815
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TscAI CASTG 3 cut(s) 234, 618, 733
TseI GCWGC 6 cut(s) 590, 593, 722, 731, 923, 974
TspDTI ATGAA 3 cut(s) 152, 806, 950
TspRI CASTG 3 cut(s) 234, 618, 733
Van91I CCANNNNNTGG 1 cut(s) 193
XapI RAATTY 1 cut(s) 78
XceI RCATGY 1 cut(s) 862
XcmI CCANNNNNNNNNTGG 1 cut(s) 837
XmnI GAANNNNTTC 1 cut(s) 27
XspI CTAG 1 cut(s) 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.