pycom05g19980

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000200
Physical Location & Seq
Reverse (-)
22913279 .. 22914111
833 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g19980.1

Sequence Viewer

Length: 660 bp
ATGCTAAACAAGTTGCTTCCAATTGATGGGGAATCCAAACAAGCAGTCACAGGCTATCTGCTTCTAGTCTGGGAATTTTTTGTTTTCAAATGTGGTGGAATGCACATTCATCAAATCCTGGCAGTTACGTTTGGCTCCGATAATCATGCAGTGCTTCCAGGAGAATTTGGTGTTGCAGCGTCTCTTTTCCCACCACAAGATTTTTTCAACACACCCAAACCTACCCTGGAAATGCCAAAAGAAAAGCGCATAACAAGAAGATACGTGTTTGATGCCTCAAAGATTGCTATTCTCAAGTGCAAAGCTGCCAGTACCACCGTCCCAAAGCCTACCCGCGTGGAATTAGTATCTGCTCTCATTGGAAGTGCACCATGGAAGCATCAAAATCAAAATTTGCTTAGATTAGATCACGATCTTCAAAGCTTAGTTGCTAAACTAAGGAAAGGCATTGACGAATTTAAAGTGAAATACACTAACACTGTTAGTGCGGATGATGCATGTGAAATCTTCGAAGTGTATATGTATCTGTTAGCAAGGGATGATATCGAAACCTATAGTGACAGCAGTTGGTGCAGGTTTTCTTTCTATGCCACGAATTTTGGATGGGGAAAGCCATCATGGGTTTATCAGAGAGTAGAATCAAGAATATGGTTGCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

220

Amino Acids

25.06

Weight (kDa)

8.81

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 138 - 214 3.6e-07 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 564
AccB7I CCANNNNNTGG 1 cut(s) 26
AccII CGCG 1 cut(s) 336
AciI CCGC 2 cut(s) 334, 488
AcsI RAATTY 5 cut(s) 74, 164, 391, 455, 595
AfaI GTAC 1 cut(s) 313
AfiI CCNNNNNNNGG 1 cut(s) 26
AflIII ACRYGT 1 cut(s) 264
AgsI TTSAA 3 cut(s) 88, 208, 419
AjnI CCWGG 3 cut(s) 117, 157, 225
AluBI AGCT 2 cut(s) 305, 423
AluI AGCT 2 cut(s) 305, 423
Alw21I GWGCWC 1 cut(s) 370
Alw26I GTCTC 1 cut(s) 186
Alw44I GTGCAC 1 cut(s) 366
ApaLI GTGCAC 1 cut(s) 366
ApeKI GCWGC 2 cut(s) 176, 305
ApoI RAATTY 5 cut(s) 74, 164, 391, 455, 595
ArsI GACNNNNNNTTYG 2 cut(s) 30, 62
AspLEI GCGC 2 cut(s) 249, 657
AsuII TTCGAA 1 cut(s) 510
BaeGI GKGCMC 1 cut(s) 370
Bbv12I GWGCWC 1 cut(s) 370
BbvI GCAGC 2 cut(s) 188, 292
BccI CCATC 3 cut(s) 20, 597, 622
BcgI CGANNNNNNTGC 2 cut(s) 128, 162
BciT130I CCWGG 3 cut(s) 119, 159, 227
BcoDI GTCTC 1 cut(s) 186
BfaI CTAG 1 cut(s) 65
BfmI CTRYAG 1 cut(s) 553
BfuAI ACCTGC 1 cut(s) 564
BisI GCNGC 2 cut(s) 177, 306
BlsI GCNGC 2 cut(s) 178, 307
Bme1390I CCNGG 3 cut(s) 119, 159, 227
BmiI GGNNCC 1 cut(s) 136
BmrFI CCNGG 3 cut(s) 119, 159, 227
BmsI GCATC 3 cut(s) 262, 388, 484
Bpu14I TTCGAA 1 cut(s) 510
BpuEI CTTGAG 1 cut(s) 278
BsaAI YACGTR 1 cut(s) 265
BsaBI GATNNNNATC 1 cut(s) 411
BsaJI CCNNGG 2 cut(s) 225, 371
Bsc4I CCNNNNNNNGG 1 cut(s) 26
Bse1I ACTGG 1 cut(s) 309
Bse8I GATNNNNATC 1 cut(s) 411
BseBI CCWGG 3 cut(s) 119, 159, 227
BseDI CCNNGG 2 cut(s) 225, 371
BseGI GGATG 3 cut(s) 496, 544, 608
BseJI GATNNNNATC 1 cut(s) 411
BseLI CCNNNNNNNGG 1 cut(s) 26
BseNI ACTGG 1 cut(s) 309
BseSI GKGCMC 1 cut(s) 370
BseXI GCAGC 2 cut(s) 188, 292
BsgI GTGCAG 1 cut(s) 592
Bsh1236I CGCG 1 cut(s) 336
BsiHKAI GWGCWC 1 cut(s) 370
BslFI GGGAC 1 cut(s) 305
BslI CCNNNNNNNGG 1 cut(s) 26
BsmAI GTCTC 1 cut(s) 186
BsmBI CGTCTC 1 cut(s) 186
BsmFI GGGAC 1 cut(s) 305
BsmI GAATGC 1 cut(s) 105
Bsp119I TTCGAA 1 cut(s) 510
Bsp1286I GDGCHC 1 cut(s) 370
Bsp143I GATC 2 cut(s) 406, 412
Bsp19I CCATGG 1 cut(s) 371
BspACI CCGC 2 cut(s) 334, 488
BspFNI CGCG 1 cut(s) 336
BspLI GGNNCC 1 cut(s) 136
BspMI ACCTGC 1 cut(s) 564
BspT104I TTCGAA 1 cut(s) 510
BsrI ACTGG 1 cut(s) 309
BssECI CCNNGG 2 cut(s) 225, 371
BssMI GATC 2 cut(s) 406, 412
BssT1I CCWWGG 1 cut(s) 371
Bst2UI CCWGG 3 cut(s) 119, 159, 227
Bst4CI ACNGT 2 cut(s) 319, 481
BstAPI GCANNNNNTGC 1 cut(s) 570
BstBAI YACGTR 1 cut(s) 265
BstBI TTCGAA 1 cut(s) 510
BstDEI CTNAG 3 cut(s) 398, 424, 437
BstDSI CCRYGG 1 cut(s) 371
BstF5I GGATG 3 cut(s) 496, 544, 608
BstFNI CGCG 1 cut(s) 336
BstHHI GCGC 2 cut(s) 249, 657
BstKTI GATC 2 cut(s) 409, 415
BstMAI GTCTC 1 cut(s) 186
BstMBI GATC 2 cut(s) 406, 412
BstMWI GCNNNNNNNGC 2 cut(s) 494, 570
BstNI CCWGG 3 cut(s) 119, 159, 227
BstNSI RCATGY 1 cut(s) 501
BstSCI CCNGG 3 cut(s) 117, 157, 225
BstSFI CTRYAG 1 cut(s) 553
BstSLI GKGCMC 1 cut(s) 370
BstUI CGCG 1 cut(s) 336
BstV1I GCAGC 2 cut(s) 188, 292
BtgI CCRYGG 1 cut(s) 371
BtsCI GGATG 3 cut(s) 496, 544, 608
BtsI GCAGTG 1 cut(s) 156
BtsIMutI CAGTG 2 cut(s) 156, 477
BveI ACCTGC 1 cut(s) 564
CfoI GCGC 2 cut(s) 249, 657
CseI GACGC 1 cut(s) 168
Csp6I GTAC 1 cut(s) 312
CspCI CAANNNNNGTGG 4 cut(s) 76, 111, 580, 615
CviAII CATG 4 cut(s) 146, 372, 498, 618
CviJI RGCY 6 cut(s) 54, 135, 305, 328, 423, 613
CviKI_1 RGCY 6 cut(s) 54, 135, 305, 328, 423, 613
CviQI GTAC 1 cut(s) 312
DdeI CTNAG 3 cut(s) 398, 424, 437
DpnI GATC 2 cut(s) 408, 414
DpnII GATC 2 cut(s) 406, 412
DraI TTTAAA 1 cut(s) 460
Eco130I CCWWGG 1 cut(s) 371
Eco32I GATATC 1 cut(s) 544
EcoRII CCWGG 3 cut(s) 117, 157, 225
EcoRV GATATC 1 cut(s) 544
EcoT14I CCWWGG 1 cut(s) 371
EcoT22I ATGCAT 1 cut(s) 499
ErhI CCWWGG 1 cut(s) 371
Esp3I CGTCTC 1 cut(s) 186
FaeI CATG 4 cut(s) 149, 375, 501, 621
FaqI GGGAC 1 cut(s) 305
FatI CATG 4 cut(s) 145, 371, 497, 617
FauI CCCGC 1 cut(s) 341
Fnu4HI GCNGC 2 cut(s) 177, 306
FokI GGATG 3 cut(s) 503, 551, 615
Fsp4HI GCNGC 2 cut(s) 177, 306
FspBI CTAG 1 cut(s) 65
GlaI GCGC 2 cut(s) 248, 656
GluI GCNGC 2 cut(s) 177, 306
HgaI GACGC 1 cut(s) 168
HhaI GCGC 2 cut(s) 249, 657
Hin1II CATG 4 cut(s) 149, 375, 501, 621
Hin6I GCGC 2 cut(s) 247, 655
HinP1I GCGC 2 cut(s) 247, 655
HindIII AAGCTT 1 cut(s) 421
HinfI GANTC 2 cut(s) 32, 638
Hpy166II GTNNAC 1 cut(s) 368
Hpy188I TCNGA 2 cut(s) 139, 630
Hpy188III TCNNGA 2 cut(s) 410, 642
Hpy8I GTNNAC 1 cut(s) 368
HpyCH4III ACNGT 2 cut(s) 319, 481
HpyCH4IV ACGT 2 cut(s) 128, 264
HpyCH4V TGCA 7 cut(s) 103, 149, 176, 300, 368, 497, 573
HpyF10VI GCNNNNNNNGC 2 cut(s) 494, 570
HpyF3I CTNAG 3 cut(s) 398, 424, 437
HpySE526I ACGT 2 cut(s) 128, 264
Hsp92II CATG 4 cut(s) 149, 375, 501, 621
HspAI GCGC 2 cut(s) 247, 655
Kzo9I GATC 2 cut(s) 406, 412
LmnI GCTCC 1 cut(s) 140
Lsp1109I GCAGC 2 cut(s) 188, 292
LweI GCATC 3 cut(s) 262, 388, 484
MaeI CTAG 1 cut(s) 65
MaeII ACGT 2 cut(s) 128, 264
MaeIII GTNAC 3 cut(s) 46, 124, 557
MalI GATC 2 cut(s) 408, 414
MboI GATC 2 cut(s) 406, 412
MboII GAAGA 3 cut(s) 270, 407, 499
MfeI CAATTG 1 cut(s) 21
MhlI GDGCHC 1 cut(s) 370
MluCI AATT 7 cut(s) 21, 74, 164, 341, 391, 455, 595
MnlI CCTC 1 cut(s) 286
Mph1103I ATGCAT 1 cut(s) 499
MseI TTAA 1 cut(s) 459
MspR9I CCNGG 3 cut(s) 119, 159, 227
MunI CAATTG 1 cut(s) 21
Mva1269I GAATGC 1 cut(s) 105
MvaI CCWGG 3 cut(s) 119, 159, 227
MvnI CGCG 1 cut(s) 336
MwoI GCNNNNNNNGC 2 cut(s) 494, 570
NcoI CCATGG 1 cut(s) 371
NdeII GATC 2 cut(s) 406, 412
NlaIII CATG 4 cut(s) 149, 375, 501, 621
NlaIV GGNNCC 1 cut(s) 136
NmuCI GTSAC 2 cut(s) 46, 557
NsiI ATGCAT 1 cut(s) 499
NspI RCATGY 1 cut(s) 501
NspV TTCGAA 1 cut(s) 510
PctI GAATGC 1 cut(s) 105
PfeI GAWTC 2 cut(s) 32, 638
PflMI CCANNNNNTGG 1 cut(s) 26
PfoI TCCNGGA 1 cut(s) 157
PkrI GCNGC 2 cut(s) 178, 307
Ppu21I YACGTR 1 cut(s) 265
Psp6I CCWGG 3 cut(s) 117, 157, 225
PspGI CCWGG 3 cut(s) 117, 157, 225
PspN4I GGNNCC 1 cut(s) 136
RsaI GTAC 1 cut(s) 313
RsaNI GTAC 1 cut(s) 312
SaqAI TTAA 1 cut(s) 459
SatI GCNGC 2 cut(s) 177, 306
Sau3AI GATC 2 cut(s) 406, 412
ScrFI CCNGG 3 cut(s) 119, 159, 227
SduI GDGCHC 1 cut(s) 370
SetI ASST 7 cut(s) 131, 223, 267, 307, 425, 554, 578
SfaNI GCATC 3 cut(s) 262, 388, 484
SfcI CTRYAG 1 cut(s) 553
SfuI TTCGAA 1 cut(s) 510
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
Sse9I AATT 7 cut(s) 21, 74, 164, 341, 391, 455, 595
SsiI CCGC 2 cut(s) 334, 488
SspMI CTAG 1 cut(s) 65
StyD4I CCNGG 3 cut(s) 117, 157, 225
StyI CCWWGG 1 cut(s) 371
TaaI ACNGT 2 cut(s) 319, 481
TaiI ACGT 2 cut(s) 131, 267
TaqI TCGA 2 cut(s) 510, 546
TasI AATT 7 cut(s) 21, 74, 164, 341, 391, 455, 595
TfiI GAWTC 2 cut(s) 32, 638
Tru1I TTAA 1 cut(s) 459
Tru9I TTAA 1 cut(s) 459
TscAI CASTG 2 cut(s) 156, 484
TseFI GTSAC 2 cut(s) 46, 557
TseI GCWGC 2 cut(s) 176, 305
Tsp45I GTSAC 2 cut(s) 46, 557
TspDTI ATGAA 1 cut(s) 98
TspRI CASTG 2 cut(s) 156, 484
Van91I CCANNNNNTGG 1 cut(s) 26
VneI GTGCAC 1 cut(s) 366
XapI RAATTY 5 cut(s) 74, 164, 391, 455, 595
XceI RCATGY 1 cut(s) 501
XcmI CCANNNNNNNNNTGG 1 cut(s) 223
XspI CTAG 1 cut(s) 65
Zsp2I ATGCAT 1 cut(s) 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.