Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0003213

Physical Location & Seq

Genomic Coordinates Forward (+)

12126354 .. 12132250

Gene Structure 5897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG078100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGGGACTGATAGTACCTGGGTGGGGAAGAAGCCTCTGAGGCGCATCGGAGGCATGTCCGATGCTCTCTCTATTGCTTCGGATCTTGGTTTCTCAGTCGCTGCTGCTCCGACTCTGGACGAGCTTCAGAACTGGTCAAGTAGTACTGGTGAGAAAGGTGATGACTTGATAAGGGTTCTGAGGGAACTTACCAGTGTGCAAAGGAAAATAGCAGATCTGCAAGTTGAACTTCAAGGGAGGAAAGATGATAAAAATGTATCACATTTGACAAATGTGAGCGAAATGGAAAAGAAGTGTGAAACTCTATCAAGGATTACTACGATATTAAAAGATGTCATTCAGAACAAGGATCGTATCATTGCTCGTCTCCAACAACCATATTCACTAGATTGCATTCCAGTGGAAGCAGAGTATCAGAAACAATTCTCTGAATTACTGATGAAGGCTGCTAGTGATTATGGAGCATTAACAGCATCAGTTGCCGATTTTCAGTGGAGCCAGACGTTTAAGGAGCCTCCTTCAGTATGGGGGGAAATGCTTCGTCCAATTCCTGTTGCCTTAGCATCATGCACCCGGTTTTTCGAAGCAATGTCTGCTATAAGGGAATCGTTTGCAACACTCCAACATCTCAGAGTAGGACAGTCTGATACCGCTTCTCCAATCACACCAGCCAAGGATTCCAGAAGAGTACCAGGGGTTTCTGATTGTGTAACTCCACCTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007049 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022607 GO:0031109 GO:0032506 GO:0034622 GO:0043933 GO:0044085 GO:0046785 GO:0051258 GO:0051301 GO:0061640 GO:0065003 GO:0071840 GO:0097435 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS2

Protein Analysis

241

Amino Acids

26.59

Weight (kDa)

5.81

Isoelectric Point (pI)

45.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAUS2	PF15003	17 - 206	6.2e-89	HAUS augmin-like complex subunit 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32980
fragaria_vesca	FvH4_6g42360
malus_domestica	MD09G1113600.v1.1 MD17G1103700.v1.1
prunus_persica	Prupe.3G211000_v2.0.a1 Prupe.3G211000_v2.0.a1
pyrus_communis	pycom09g03770 pycom17g09780
rosa_chinensis	RchiOBHm_Chr1g0329411 RchiOBHm_Chr1g0361251 RchiOBHm_Chr2g0158231 RchiOBHm_Chr2g0158271
rosa_laevigata	RLG00000021067 RLG00000021072 RLG00000029885 RLG00000029893
rosa_multiflora	Rmu_sc0003151.1_g000015 Rmu_sc0005982.1_g000004 Rmu_sc0007763.1_g000001 Rmu_sc0008904.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091550 Rroxscaffold_2G00091600
rosa_rugosa	Rorug01G0079600 Rorug01G0079700 Rorug01G0079700 Rorug02G0466400 Rorug02G0466500
rosa_samantha	Rh1BG078100 Rh1CG094800 Rh2BG546600 Rh2CG516500 Rh2CG516800 Rh3BG302100 Rh5BG556200
rosa_wichuraiana	Rw2G044040 Rw2G044090 Rw2G044110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	651
AclWI	GGATC	2 cut(s)	90, 357
AcuI	CTGAAG	2 cut(s)	110, 504
AfaI	GTAC	3 cut(s)	16, 145, 690
AfiI	CCNNNNNNNGG	1 cut(s)	24
AgsI	TTSAA	2 cut(s)	227, 233
AjnI	CCWGG	2 cut(s)	17, 691
AluBI	AGCT	1 cut(s)	124
AluI	AGCT	1 cut(s)	124
Alw26I	GTCTC	1 cut(s)	371
AlwI	GGATC	2 cut(s)	90, 357
AlwNI	CAGNNNCTG	1 cut(s)	101
ApeKI	GCWGC	3 cut(s)	101, 104, 446
Asp700I	GAANNNNTTC	2 cut(s)	422, 537
AspLEI	GCGC	1 cut(s)	45
AsuC2I	CCSGG	1 cut(s)	574
AsuHPI	GGTGA	2 cut(s)	161, 170
AsuII	TTCGAA	1 cut(s)	582
BbvI	GCAGC	3 cut(s)	88, 91, 433
BciT130I	CCWGG	2 cut(s)	19, 693
BcnI	CCSGG	1 cut(s)	574
BcoDI	GTCTC	1 cut(s)	371
BfaI	CTAG	2 cut(s)	386, 450
BglI	GCCNNNNNGGC	1 cut(s)	40
BglII	AGATCT	1 cut(s)	214
BisI	GCNGC	3 cut(s)	102, 105, 447
BlsI	GCNGC	3 cut(s)	103, 106, 448
BmcAI	AGTACT	1 cut(s)	145
Bme1390I	CCNGG	3 cut(s)	19, 574, 693
BmiI	GGNNCC	2 cut(s)	497, 513
BmrFI	CCNGG	3 cut(s)	19, 574, 693
BmsI	GCATC	4 cut(s)	52, 54, 482, 572
Bpu10I	CCTNAGC	1 cut(s)	559
Bpu14I	TTCGAA	1 cut(s)	582
BpuMI	CCSGG	1 cut(s)	574
BsaJI	CCNNGG	3 cut(s)	18, 672, 692
BsaXI	ACNNNNNCTCC	3 cut(s)	640, 670, 703
Bsc4I	CCNNNNNNNGG	1 cut(s)	24
Bse1I	ACTGG	4 cut(s)	137, 151, 192, 398
Bse3DI	GCAATG	2 cut(s)	357, 594
BseBI	CCWGG	2 cut(s)	19, 693
BseDI	CCNNGG	3 cut(s)	18, 672, 692
BseLI	CCNNNNNNNGG	1 cut(s)	24
BseMI	GCAATG	2 cut(s)	357, 594
BseMII	CTCAG	4 cut(s)	29, 108, 170, 643
BseNI	ACTGG	4 cut(s)	137, 151, 192, 398
BseXI	GCAGC	3 cut(s)	88, 91, 433
BsiSI	CCGG	1 cut(s)	574
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	1 cut(s)	24
BsmAI	GTCTC	1 cut(s)	371
BsmBI	CGTCTC	1 cut(s)	371
BsmFI	GGGAC	1 cut(s)	19
BsmI	GAATGC	1 cut(s)	393
Bsp119I	TTCGAA	1 cut(s)	582
Bsp143I	GATC	3 cut(s)	82, 214, 349
BspACI	CCGC	1 cut(s)	651
BspCNI	CTCAG	4 cut(s)	30, 107, 171, 642
BspLI	GGNNCC	2 cut(s)	497, 513
BspPI	GGATC	2 cut(s)	90, 357
BspT104I	TTCGAA	1 cut(s)	582
BsrDI	GCAATG	2 cut(s)	357, 594
BsrI	ACTGG	4 cut(s)	137, 151, 192, 398
BssECI	CCNNGG	3 cut(s)	18, 672, 692
BssMI	GATC	3 cut(s)	82, 214, 349
BssT1I	CCWWGG	1 cut(s)	672
Bst2UI	CCWGG	2 cut(s)	19, 693
Bst4CI	ACNGT	1 cut(s)	642
Bst6I	CTCTTC	1 cut(s)	679
BstAPI	GCANNNNNTGC	2 cut(s)	479, 593
BstBI	TTCGAA	1 cut(s)	582
BstDEI	CTNAG	5 cut(s)	38, 94, 179, 559, 629
BstHHI	GCGC	1 cut(s)	45
BstKTI	GATC	3 cut(s)	85, 217, 352
BstMAI	GTCTC	1 cut(s)	371
BstMBI	GATC	3 cut(s)	82, 214, 349
BstMWI	GCNNNNNNNGC	5 cut(s)	40, 51, 470, 479, 593
BstNI	CCWGG	2 cut(s)	19, 693
BstNSI	RCATGY	1 cut(s)	58
BstSCI	CCNGG	3 cut(s)	17, 572, 691
BstV1I	GCAGC	3 cut(s)	88, 91, 433
BstX2I	RGATCY	2 cut(s)	82, 214
BstYI	RGATCY	2 cut(s)	82, 214
BtsIMutI	CAGTG	3 cut(s)	199, 405, 497
CaiI	CAGNNNCTG	1 cut(s)	101
CfoI	GCGC	1 cut(s)	45
Csp6I	GTAC	3 cut(s)	15, 144, 689
CviAII	CATG	2 cut(s)	55, 567
CviJI	RGCY	6 cut(s)	34, 124, 446, 498, 514, 671
CviKI_1	RGCY	6 cut(s)	34, 124, 446, 498, 514, 671
CviQI	GTAC	3 cut(s)	15, 144, 689
DdeI	CTNAG	5 cut(s)	38, 94, 179, 559, 629
DpnI	GATC	3 cut(s)	84, 216, 351
DpnII	GATC	3 cut(s)	82, 214, 349
Eam1104I	CTCTTC	1 cut(s)	679
EarI	CTCTTC	1 cut(s)	679
Eco130I	CCWWGG	1 cut(s)	672
Eco57I	CTGAAG	2 cut(s)	110, 504
EcoRII	CCWGG	2 cut(s)	17, 691
EcoT14I	CCWWGG	1 cut(s)	672
ErhI	CCWWGG	1 cut(s)	672
Esp3I	CGTCTC	1 cut(s)	371
FaeI	CATG	2 cut(s)	58, 570
FaiI	YATR	6 cut(s)	56, 379, 459, 526, 568, 599
FalI	AAGNNNNNCTT	2 cut(s)	213, 245
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	2 cut(s)	54, 566
Fnu4HI	GCNGC	3 cut(s)	102, 105, 447
Fsp4HI	GCNGC	3 cut(s)	102, 105, 447
FspBI	CTAG	2 cut(s)	386, 450
GlaI	GCGC	1 cut(s)	44
GluI	GCNGC	3 cut(s)	102, 105, 447
HapII	CCGG	1 cut(s)	574
HhaI	GCGC	1 cut(s)	45
Hin1II	CATG	2 cut(s)	58, 570
Hin6I	GCGC	1 cut(s)	43
HinP1I	GCGC	1 cut(s)	43
HinfI	GANTC	3 cut(s)	112, 605, 677
HpaII	CCGG	1 cut(s)	574
HphI	GGTGA	2 cut(s)	161, 170
Hpy188III	TCNNGA	2 cut(s)	116, 681
HpyAV	CCTTC	2 cut(s)	436, 528
HpyCH4III	ACNGT	1 cut(s)	642
HpyCH4IV	ACGT	1 cut(s)	503
HpyCH4V	TGCA	5 cut(s)	199, 220, 393, 570, 614
HpyF10VI	GCNNNNNNNGC	5 cut(s)	40, 51, 470, 479, 593
HpyF3I	CTNAG	5 cut(s)	38, 94, 179, 559, 629
HpySE526I	ACGT	1 cut(s)	503
Hsp92II	CATG	2 cut(s)	58, 570
HspAI	GCGC	1 cut(s)	43
Kzo9I	GATC	3 cut(s)	82, 214, 349
LmnI	GCTCC	4 cut(s)	112, 461, 495, 511
Lsp1109I	GCAGC	3 cut(s)	88, 91, 433
LweI	GCATC	4 cut(s)	52, 54, 482, 572
MaeI	CTAG	2 cut(s)	386, 450
MaeII	ACGT	1 cut(s)	503
MaeIII	GTNAC	1 cut(s)	709
MalI	GATC	3 cut(s)	84, 216, 351
MboI	GATC	3 cut(s)	82, 214, 349
MboII	GAAGA	2 cut(s)	40, 696
MflI	RGATCY	2 cut(s)	82, 214
MluCI	AATT	3 cut(s)	422, 431, 546
MlyI	GAGTC	1 cut(s)	106
MmeI	TCCRAC	3 cut(s)	134, 394, 646
MnlI	CCTC	6 cut(s)	33, 44, 45, 174, 231, 525
MroXI	GAANNNNTTC	2 cut(s)	422, 537
MseI	TTAA	3 cut(s)	326, 467, 507
MslI	CAYNNNNRTG	1 cut(s)	398
MspI	CCGG	1 cut(s)	574
MspR9I	CCNGG	3 cut(s)	19, 574, 693
Mva1269I	GAATGC	1 cut(s)	393
MvaI	CCWGG	2 cut(s)	19, 693
MwoI	GCNNNNNNNGC	5 cut(s)	40, 51, 470, 479, 593
NciI	CCSGG	1 cut(s)	574
NdeII	GATC	3 cut(s)	82, 214, 349
NlaIII	CATG	2 cut(s)	58, 570
NlaIV	GGNNCC	2 cut(s)	497, 513
NspI	RCATGY	1 cut(s)	58
NspV	TTCGAA	1 cut(s)	582
PctI	GAATGC	1 cut(s)	393
PdmI	GAANNNNTTC	2 cut(s)	422, 537
PfeI	GAWTC	2 cut(s)	605, 677
PkrI	GCNGC	3 cut(s)	103, 106, 448
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
Psp6I	CCWGG	2 cut(s)	17, 691
PspGI	CCWGG	2 cut(s)	17, 691
PspN4I	GGNNCC	2 cut(s)	497, 513
PstNI	CAGNNNCTG	1 cut(s)	101
PsuI	RGATCY	2 cut(s)	82, 214
RsaI	GTAC	3 cut(s)	16, 145, 690
RsaNI	GTAC	3 cut(s)	15, 144, 689
RseI	CAYNNNNRTG	1 cut(s)	398
SaqAI	TTAA	3 cut(s)	326, 467, 507
SatI	GCNGC	3 cut(s)	102, 105, 447
Sau3AI	GATC	3 cut(s)	82, 214, 349
ScaI	AGTACT	1 cut(s)	145
SchI	GAGTC	1 cut(s)	106
ScrFI	CCNGG	3 cut(s)	19, 574, 693
SetI	ASST	5 cut(s)	20, 126, 160, 506, 721
SfaNI	GCATC	4 cut(s)	52, 54, 482, 572
SfuI	TTCGAA	1 cut(s)	582
SmiMI	CAYNNNNRTG	1 cut(s)	398
Sse9I	AATT	3 cut(s)	422, 431, 546
SsiI	CCGC	1 cut(s)	651
SspMI	CTAG	2 cut(s)	386, 450
StyD4I	CCNGG	3 cut(s)	17, 572, 691
StyI	CCWWGG	1 cut(s)	672
TaaI	ACNGT	1 cut(s)	642
TaiI	ACGT	1 cut(s)	506
TaqI	TCGA	1 cut(s)	582
TasI	AATT	3 cut(s)	422, 431, 546
TatI	WGTACW	1 cut(s)	143
TfiI	GAWTC	2 cut(s)	605, 677
Tru1I	TTAA	3 cut(s)	326, 467, 507
Tru9I	TTAA	3 cut(s)	326, 467, 507
TscAI	CASTG	3 cut(s)	199, 405, 497
TseI	GCWGC	3 cut(s)	101, 104, 446
TspDTI	ATGAA	1 cut(s)	455
TspRI	CASTG	3 cut(s)	199, 405, 497
XceI	RCATGY	1 cut(s)	58
XmnI	GAANNNNTTC	2 cut(s)	422, 537
XspI	CTAG	2 cut(s)	386, 450
ZrmI	AGTACT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.