Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003213

Physical Location & Seq

Genomic Coordinates Reverse (-)

12979715 .. 12980376

Gene Structure 662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0079600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCTCTTGGAATTGAACTGGAGACTTTTTTGTATCATGATGGTTGTGGCGCAATAGAACTCTACGCAGGTTTGGAGGTGGGGTACTGGAACTTAATGGAGTCGTTTGTATGGCAAGTGACTGGCAGGTCGAGTTTGAGAACGCATTCATTACTCGACAGGTTCATGAATGTGCTCCTCCACACCATCAGAGCAGATGATCACGGTATAATGAAAGGTACTATGGCAGTCCCACAGGTTGGAAACCTCCCCTCAAGATTGGTAGAAGCTCTTGCACTTTTACATGGTCTAAGATTTTCCTTGCATGTGGGATTCATGAGTCTTGAAGTTGAAGGTGATGCTCTCTCTGTTATTAACACATTGGTTGATAGTTCAGATGATTTAAGTCCTGAGGGCCATATCATTGATGAAGTTAAGTCTTTAGTTCAGTCATCTTTTCATGTTTGTAATGGGCACTTTGTGAAGCGAGAAAGCAATAAAGTTGCTCATCGCTTAGCAAATGAGGCCTTGAAAATTAGTCAGACTTTTCTTTGTTTAGAGTCGAAGCCTCTTTGGCTTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007049 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022607 GO:0031109 GO:0032506 GO:0034622 GO:0043933 GO:0044085 GO:0046785 GO:0051258 GO:0051301 GO:0061640 GO:0065003 GO:0071840 GO:0097435 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS2

Protein Analysis

187

Amino Acids

20.82

Weight (kDa)

5.71

Isoelectric Point (pI)

39.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	66 - 169	9.2e-18	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32980
fragaria_vesca	FvH4_6g42360
malus_domestica	MD09G1113600.v1.1 MD17G1103700.v1.1
prunus_persica	Prupe.3G211000_v2.0.a1 Prupe.3G211000_v2.0.a1
pyrus_communis	pycom09g03770 pycom17g09780
rosa_chinensis	RchiOBHm_Chr1g0329411 RchiOBHm_Chr1g0361251 RchiOBHm_Chr2g0158231 RchiOBHm_Chr2g0158271
rosa_laevigata	RLG00000021067 RLG00000021072 RLG00000029885 RLG00000029893
rosa_multiflora	Rmu_sc0003151.1_g000015 Rmu_sc0005982.1_g000004 Rmu_sc0007763.1_g000001 Rmu_sc0008904.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091550 Rroxscaffold_2G00091600
rosa_rugosa	Rorug01G0079600 Rorug01G0079700 Rorug01G0079700 Rorug02G0466400 Rorug02G0466500
rosa_samantha	Rh1BG078100 Rh1CG094800 Rh2BG546600 Rh2CG516500 Rh2CG516800 Rh3BG302100 Rh5BG556200
rosa_wichuraiana	Rw2G044040 Rw2G044090 Rw2G044110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	127
Acc36I	ACCTGC	2 cut(s)	59, 117
AccB7I	CCANNNNNTGG	1 cut(s)	239
AdeI	CACNNNGTG	1 cut(s)	460
AfaI	GTAC	2 cut(s)	86, 220
AfiI	CCNNNNNNNGG	1 cut(s)	239
AgsI	TTSAA	4 cut(s)	17, 326, 332, 511
AluBI	AGCT	1 cut(s)	269
AluI	AGCT	1 cut(s)	269
Alw21I	GWGCWC	1 cut(s)	177
Alw26I	GTCTC	1 cut(s)	17
AoxI	GGCC	2 cut(s)	394, 504
Asp700I	GAANNNNTTC	1 cut(s)	145
AspLEI	GCGC	1 cut(s)	53
AspS9I	GGNCC	1 cut(s)	394
AsuHPI	GGTGA	1 cut(s)	347
AxyI	CCTNAGG	1 cut(s)	390
BaeGI	GKGCMC	1 cut(s)	456
Bbv12I	GWGCWC	1 cut(s)	177
BccI	CCATC	2 cut(s)	35, 194
BclI	TGATCA	1 cut(s)	199
BcoDI	GTCTC	1 cut(s)	17
BfuAI	ACCTGC	2 cut(s)	59, 117
BglI	GCCNNNNNGGC	1 cut(s)	553
BlpI	GCTNAGC	1 cut(s)	493
BmgT120I	GGNCC	1 cut(s)	394
BmsI	GCATC	1 cut(s)	328
BpmI	CTGGAG	1 cut(s)	41
Bpu1102I	GCTNAGC	1 cut(s)	493
BpuEI	CTTGAG	1 cut(s)	238
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse1I	ACTGG	3 cut(s)	24, 92, 127
Bse21I	CCTNAGG	1 cut(s)	390
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseMII	CTCAG	1 cut(s)	381
BseNI	ACTGG	3 cut(s)	24, 92, 127
BseRI	GAGGAG	1 cut(s)	167
BseSI	GKGCMC	1 cut(s)	456
BshFI	GGCC	2 cut(s)	396, 506
BsiHKAI	GWGCWC	1 cut(s)	177
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	1 cut(s)	239
BsmAI	GTCTC	1 cut(s)	17
BsmFI	GGGAC	1 cut(s)	215
BsmI	GAATGC	1 cut(s)	145
BsnI	GGCC	2 cut(s)	396, 506
Bsp1286I	GDGCHC	2 cut(s)	177, 456
Bsp143I	GATC	1 cut(s)	199
Bsp1720I	GCTNAGC	1 cut(s)	493
BspANI	GGCC	2 cut(s)	396, 506
BspCNI	CTCAG	1 cut(s)	382
BspHI	TCATGA	3 cut(s)	37, 165, 315
BspMI	ACCTGC	2 cut(s)	59, 117
BsrI	ACTGG	3 cut(s)	24, 92, 127
BssMI	GATC	1 cut(s)	199
Bst4CI	ACNGT	1 cut(s)	206
BstDEI	CTNAG	3 cut(s)	290, 390, 493
BstHHI	GCGC	1 cut(s)	53
BstKTI	GATC	1 cut(s)	202
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	1 cut(s)	199
BstMWI	GCNNNNNNNGC	2 cut(s)	503, 553
BstNSI	RCATGY	1 cut(s)	308
BstSLI	GKGCMC	1 cut(s)	456
Bsu36I	CCTNAGG	1 cut(s)	390
BsuRI	GGCC	2 cut(s)	396, 506
BtgZI	GCGATG	1 cut(s)	473
BveI	ACCTGC	2 cut(s)	59, 117
CciI	TCATGA	3 cut(s)	37, 165, 315
CfoI	GCGC	1 cut(s)	53
Cfr13I	GGNCC	1 cut(s)	394
Csp6I	GTAC	2 cut(s)	85, 219
CviAII	CATG	6 cut(s)	38, 166, 284, 305, 316, 440
CviJI	RGCY	6 cut(s)	5, 269, 396, 506, 547, 556
CviKI_1	RGCY	6 cut(s)	5, 269, 396, 506, 547, 556
CviQI	GTAC	2 cut(s)	85, 219
DdeI	CTNAG	3 cut(s)	290, 390, 493
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
DraIII	CACNNNGTG	1 cut(s)	460
DrdI	GACNNNNNNGTC	1 cut(s)	127
DseDI	GACNNNNNNGTC	1 cut(s)	127
Eco147I	AGGCCT	1 cut(s)	506
Eco81I	CCTNAGG	1 cut(s)	390
FaeI	CATG	6 cut(s)	41, 169, 287, 308, 319, 443
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	6 cut(s)	37, 165, 283, 304, 315, 439
FbaI	TGATCA	1 cut(s)	199
GlaI	GCGC	1 cut(s)	52
GsuI	CTGGAG	1 cut(s)	41
HaeIII	GGCC	2 cut(s)	396, 506
HhaI	GCGC	1 cut(s)	53
Hin1II	CATG	6 cut(s)	41, 169, 287, 308, 319, 443
Hin6I	GCGC	1 cut(s)	51
HinP1I	GCGC	1 cut(s)	51
HinfI	GANTC	4 cut(s)	101, 312, 319, 539
HphI	GGTGA	1 cut(s)	347
Hpy188I	TCNGA	3 cut(s)	191, 376, 522
Hpy188III	TCNNGA	6 cut(s)	38, 166, 255, 316, 323, 389
HpyAV	CCTTC	1 cut(s)	326
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4V	TGCA	2 cut(s)	275, 304
HpyF10VI	GCNNNNNNNGC	2 cut(s)	503, 553
HpyF3I	CTNAG	3 cut(s)	290, 390, 493
Hsp92II	CATG	6 cut(s)	41, 169, 287, 308, 319, 443
HspAI	GCGC	1 cut(s)	51
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	1 cut(s)	199
LmnI	GCTCC	1 cut(s)	180
LpnPI	CCDG	8 cut(s)	5, 54, 73, 108, 112, 145, 221, 402
LweI	GCATC	1 cut(s)	328
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MhlI	GDGCHC	2 cut(s)	177, 456
MluCI	AATT	2 cut(s)	12, 513
MlyI	GAGTC	3 cut(s)	110, 328, 548
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	7 cut(s)	70, 188, 257, 262, 385, 496, 558
MroXI	GAANNNNTTC	1 cut(s)	145
MseI	TTAA	4 cut(s)	95, 354, 383, 414
MslI	CAYNNNNRTG	1 cut(s)	170
Mva1269I	GAATGC	1 cut(s)	145
MwoI	GCNNNNNNNGC	2 cut(s)	503, 553
NdeII	GATC	1 cut(s)	199
NlaIII	CATG	6 cut(s)	41, 169, 287, 308, 319, 443
NmuCI	GTSAC	1 cut(s)	118
NspI	RCATGY	1 cut(s)	308
PagI	TCATGA	3 cut(s)	37, 165, 315
PceI	AGGCCT	1 cut(s)	506
PctI	GAATGC	1 cut(s)	145
PdmI	GAANNNNTTC	1 cut(s)	145
PfeI	GAWTC	1 cut(s)	312
PflMI	CCANNNNNTGG	1 cut(s)	239
PleI	GAGTC	3 cut(s)	109, 327, 547
PpsI	GAGTC	3 cut(s)	109, 327, 547
PspPI	GGNCC	1 cut(s)	394
RsaI	GTAC	2 cut(s)	86, 220
RsaNI	GTAC	2 cut(s)	85, 219
RseI	CAYNNNNRTG	1 cut(s)	170
SaqAI	TTAA	4 cut(s)	95, 354, 383, 414
Sau3AI	GATC	1 cut(s)	199
Sau96I	GGNCC	1 cut(s)	394
SchI	GAGTC	3 cut(s)	110, 328, 548
SduI	GDGCHC	2 cut(s)	177, 456
SetI	ASST	9 cut(s)	73, 81, 131, 164, 220, 240, 249, 271, 337
SfaNI	GCATC	1 cut(s)	328
SmiMI	CAYNNNNRTG	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	253
SmoI	CTYRAG	1 cut(s)	253
Sse9I	AATT	2 cut(s)	12, 513
SseBI	AGGCCT	1 cut(s)	506
StuI	AGGCCT	1 cut(s)	506
TaaI	ACNGT	1 cut(s)	206
TaqI	TCGA	3 cut(s)	131, 156, 542
TasI	AATT	2 cut(s)	12, 513
TfiI	GAWTC	1 cut(s)	312
Tru1I	TTAA	4 cut(s)	95, 354, 383, 414
Tru9I	TTAA	4 cut(s)	95, 354, 383, 414
TseFI	GTSAC	1 cut(s)	118
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	8 cut(s)	138, 154, 182, 227, 304, 423, 428, 548
Van91I	CCANNNNNTGG	1 cut(s)	239
XceI	RCATGY	1 cut(s)	308
XmnI	GAANNNNTTC	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.