Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008904.1

Orthogroup ID

OG0003213

Physical Location & Seq

Genomic Coordinates Reverse (-)

6962 .. 9996

Gene Structure 3035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008904.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

atgggccttatttgggctggttgtccagcccaacttggcggcatttggtgggtctctgaaaagcaaaagaagaaagtgggtggaggaatgtcgatggggagtgatagtacctgggtggggaagaagcctctgagacgaatcggaggcatgtccgatgctctatctattgcttcggatcttggtttctcagtcgccgctgctcccactccggaagagcttcagagctggtcgagtagtactggtgagaaaggtgatgacttgataagggttctgagggaacttaccagtgtgcaaaggaaaatagctgatctgcaagttgaacttcaagggagaaaagatgataaaaatgtatcacatttgacacatgtgagcgaaatggaaaagaagtgtgaaactctatcgaggattactacgattctaaaagatgtcattcagaacaaggatcgtatcattgctcgtctccaacaaccatattcactcgattgtattccagtggaagcagagtatcagaaacaattctctgaattactgatgaaggctgctagtgattatggagcattaacagcttcagttgctgatttccagtggagccagacatttaaggagcctccttcagtatggggggaaatgcttcgtccaattcctgttgccttagcatcatgcaccaggttttttgaagcaatgtctgctatgagggagtcgtttgcaacacttcaacatctcagagtaggtcattctgattcctcttctcctatcacaccggccaaggattcgagaagagtaccaggggtttccgattgtgtaactccacctccctggaaaaccgaaccaggctttgatgacttggctatcaaaagctcaagaaggacggatatcaagcatcaagaagcagaagatgaaagtgagctggacggctctagccacaggagattgtcctggcctccttcagttaaaaaggctgctacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007049 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022607 GO:0031109 GO:0032506 GO:0034622 GO:0043933 GO:0044085 GO:0046785 GO:0051258 GO:0051301 GO:0061640 GO:0065003 GO:0071840 GO:0097435 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS2

Protein Analysis

322

Amino Acids

35.56

Weight (kDa)

7.01

Isoelectric Point (pI)

54.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32980
fragaria_vesca	FvH4_6g42360
malus_domestica	MD09G1113600.v1.1 MD17G1103700.v1.1
prunus_persica	Prupe.3G211000_v2.0.a1 Prupe.3G211000_v2.0.a1
pyrus_communis	pycom09g03770 pycom17g09780
rosa_chinensis	RchiOBHm_Chr1g0329411 RchiOBHm_Chr1g0361251 RchiOBHm_Chr2g0158231 RchiOBHm_Chr2g0158271
rosa_laevigata	RLG00000021067 RLG00000021072 RLG00000029885 RLG00000029893
rosa_multiflora	Rmu_sc0003151.1_g000015 Rmu_sc0005982.1_g000004 Rmu_sc0007763.1_g000001 Rmu_sc0008904.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091550 Rroxscaffold_2G00091600
rosa_rugosa	Rorug01G0079600 Rorug01G0079700 Rorug01G0079700 Rorug02G0466400 Rorug02G0466500
rosa_samantha	Rh1BG078100 Rh1CG094800 Rh2BG546600 Rh2CG516500 Rh2CG516800 Rh3BG302100 Rh5BG556200
rosa_wichuraiana	Rw2G044040 Rw2G044090 Rw2G044110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	208
AciI	CCGC	2 cut(s)	39, 195
AclWI	GGATC	2 cut(s)	183, 450
AcoI	YGGCCR	1 cut(s)	762
AcuI	CTGAAG	4 cut(s)	203, 552, 597, 930
AfaI	GTAC	3 cut(s)	109, 238, 783
AfiI	CCNNNNNNNGG	2 cut(s)	13, 117
AflIII	ACRYGT	1 cut(s)	364
AgsI	TTSAA	4 cut(s)	320, 326, 677, 716
AjnI	CCWGG	6 cut(s)	110, 665, 784, 815, 829, 935
AluBI	AGCT	6 cut(s)	217, 225, 305, 566, 858, 907
AluI	AGCT	6 cut(s)	217, 225, 305, 566, 858, 907
Alw26I	GTCTC	3 cut(s)	58, 127, 464
AlwI	GGATC	2 cut(s)	183, 450
AlwNI	CAGNNNCTG	1 cut(s)	575
Aor13HI	TCCGGA	1 cut(s)	208
AoxI	GGCC	3 cut(s)	4, 762, 938
ApeKI	GCWGC	3 cut(s)	197, 539, 959
Asp700I	GAANNNNTTC	3 cut(s)	216, 515, 630
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	2 cut(s)	254, 263
BbvI	GCAGC	3 cut(s)	184, 526, 946
BccI	CCATC	1 cut(s)	88
BceAI	ACGGC	1 cut(s)	928
BciT130I	CCWGG	6 cut(s)	112, 667, 786, 817, 831, 937
BcoDI	GTCTC	3 cut(s)	58, 127, 464
BfaI	CTAG	2 cut(s)	543, 918
BisI	GCNGC	5 cut(s)	40, 195, 198, 540, 960
BlsI	GCNGC	5 cut(s)	41, 196, 199, 541, 961
BmcAI	AGTACT	1 cut(s)	238
Bme1390I	CCNGG	6 cut(s)	112, 667, 786, 817, 831, 937
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	590, 606
BmrFI	CCNGG	6 cut(s)	112, 667, 786, 817, 831, 937
BmsI	GCATC	3 cut(s)	145, 665, 889
Bpu10I	CCTNAGC	1 cut(s)	652
BpuEI	CTTGAG	1 cut(s)	844
BsaI	GGTCTC	1 cut(s)	58
BsaJI	CCNNGG	4 cut(s)	111, 765, 785, 815
BsaWI	WCCGGW	1 cut(s)	208
BsaXI	ACNNNNNCTCC	4 cut(s)	91, 121, 796, 826
Bsc4I	CCNNNNNNNGG	2 cut(s)	13, 117
Bse118I	RCCGGY	1 cut(s)	760
Bse1I	ACTGG	4 cut(s)	244, 285, 491, 583
Bse3DI	GCAATG	2 cut(s)	450, 687
BseAI	TCCGGA	1 cut(s)	208
BseBI	CCWGG	6 cut(s)	112, 667, 786, 817, 831, 937
BseDI	CCNNGG	4 cut(s)	111, 765, 785, 815
BseLI	CCNNNNNNNGG	2 cut(s)	13, 117
BseMI	GCAATG	2 cut(s)	450, 687
BseMII	CTCAG	4 cut(s)	122, 201, 263, 736
BseNI	ACTGG	4 cut(s)	244, 285, 491, 583
BseXI	GCAGC	3 cut(s)	184, 526, 946
BshFI	GGCC	3 cut(s)	6, 764, 940
BsiSI	CCGG	2 cut(s)	209, 761
BslI	CCNNNNNNNGG	2 cut(s)	13, 117
BsmAI	GTCTC	3 cut(s)	58, 127, 464
BsmBI	CGTCTC	2 cut(s)	127, 464
BsnI	GGCC	3 cut(s)	6, 764, 940
Bso31I	GGTCTC	1 cut(s)	58
Bsp13I	TCCGGA	1 cut(s)	208
Bsp143I	GATC	3 cut(s)	175, 307, 442
BspACI	CCGC	2 cut(s)	39, 195
BspANI	GGCC	3 cut(s)	6, 764, 940
BspCNI	CTCAG	4 cut(s)	123, 200, 264, 735
BspEI	TCCGGA	1 cut(s)	208
BspLI	GGNNCC	2 cut(s)	590, 606
BspPI	GGATC	2 cut(s)	183, 450
BspQI	GCTCTTC	1 cut(s)	207
BspTNI	GGTCTC	1 cut(s)	58
BsrDI	GCAATG	2 cut(s)	450, 687
BsrFI	RCCGGY	1 cut(s)	760
BsrI	ACTGG	4 cut(s)	244, 285, 491, 583
BssAI	RCCGGY	1 cut(s)	760
BssECI	CCNNGG	4 cut(s)	111, 765, 785, 815
BssMI	GATC	3 cut(s)	175, 307, 442
BssT1I	CCWWGG	1 cut(s)	765
Bst2UI	CCWGG	6 cut(s)	112, 667, 786, 817, 831, 937
Bst6I	CTCTTC	3 cut(s)	207, 751, 772
BstAPI	GCANNNNNTGC	1 cut(s)	686
BstDEI	CTNAG	5 cut(s)	131, 187, 272, 652, 722
BstKTI	GATC	3 cut(s)	178, 310, 445
BstMAI	GTCTC	3 cut(s)	58, 127, 464
BstMBI	GATC	3 cut(s)	175, 307, 442
BstMWI	GCNNNNNNNGC	3 cut(s)	563, 572, 686
BstNI	CCWGG	6 cut(s)	112, 667, 786, 817, 831, 937
BstNSI	RCATGY	2 cut(s)	151, 368
BstSCI	CCNGG	6 cut(s)	110, 665, 784, 815, 829, 935
BstV1I	GCAGC	3 cut(s)	184, 526, 946
BstX2I	RGATCY	1 cut(s)	175
BstXI	CCANNNNNNTGG	1 cut(s)	816
BstYI	RGATCY	1 cut(s)	175
BsuRI	GGCC	3 cut(s)	6, 764, 940
BtsIMutI	CAGTG	3 cut(s)	292, 498, 590
CaiI	CAGNNNCTG	1 cut(s)	575
Cfr10I	RCCGGY	1 cut(s)	760
Cfr13I	GGNCC	1 cut(s)	4
CsiI	ACCWGGT	1 cut(s)	665
Csp6I	GTAC	3 cut(s)	108, 237, 782
CviAII	CATG	3 cut(s)	148, 365, 660
CviQI	GTAC	3 cut(s)	108, 237, 782
DdeI	CTNAG	5 cut(s)	131, 187, 272, 652, 722
DpnI	GATC	3 cut(s)	177, 309, 444
DpnII	GATC	3 cut(s)	175, 307, 442
EaeI	YGGCCR	1 cut(s)	762
Eam1104I	CTCTTC	3 cut(s)	207, 751, 772
EarI	CTCTTC	3 cut(s)	207, 751, 772
Eco130I	CCWWGG	1 cut(s)	765
Eco31I	GGTCTC	1 cut(s)	58
Eco32I	GATATC	1 cut(s)	874
Eco57I	CTGAAG	4 cut(s)	203, 552, 597, 930
EcoRII	CCWGG	6 cut(s)	110, 665, 784, 815, 829, 935
EcoRV	GATATC	1 cut(s)	874
EcoT14I	CCWWGG	1 cut(s)	765
ErhI	CCWWGG	1 cut(s)	765
Esp3I	CGTCTC	2 cut(s)	127, 464
FaeI	CATG	3 cut(s)	151, 368, 663
FaiI	YATR	7 cut(s)	149, 366, 472, 552, 619, 661, 692
FalI	AAGNNNNNCTT	2 cut(s)	306, 338
FatI	CATG	3 cut(s)	147, 364, 659
Fnu4HI	GCNGC	5 cut(s)	40, 195, 198, 540, 960
Fsp4HI	GCNGC	5 cut(s)	40, 195, 198, 540, 960
FspBI	CTAG	2 cut(s)	543, 918
GluI	GCNGC	5 cut(s)	40, 195, 198, 540, 960
HaeIII	GGCC	3 cut(s)	6, 764, 940
HapII	CCGG	2 cut(s)	209, 761
Hin1II	CATG	3 cut(s)	151, 368, 663
HinfI	GANTC	5 cut(s)	138, 415, 698, 740, 770
HpaII	CCGG	2 cut(s)	209, 761
HphI	GGTGA	2 cut(s)	254, 263
Hpy188III	TCNNGA	4 cut(s)	209, 774, 861, 884
HpyAV	CCTTC	4 cut(s)	529, 621, 858, 954
HpyCH4V	TGCA	4 cut(s)	292, 313, 663, 707
HpyF10VI	GCNNNNNNNGC	3 cut(s)	563, 572, 686
HpyF3I	CTNAG	5 cut(s)	131, 187, 272, 652, 722
Hsp92II	CATG	3 cut(s)	151, 368, 663
Kpn2I	TCCGGA	1 cut(s)	208
Kzo9I	GATC	3 cut(s)	175, 307, 442
LguI	GCTCTTC	1 cut(s)	207
LmnI	GCTCC	4 cut(s)	205, 554, 588, 604
Lsp1109I	GCAGC	3 cut(s)	184, 526, 946
LweI	GCATC	3 cut(s)	145, 665, 889
MabI	ACCWGGT	1 cut(s)	665
MaeI	CTAG	2 cut(s)	543, 918
MaeIII	GTNAC	1 cut(s)	802
MalI	GATC	3 cut(s)	177, 309, 444
MboI	GATC	3 cut(s)	175, 307, 442
MboII	GAAGA	6 cut(s)	82, 133, 224, 738, 789, 905
MflI	RGATCY	1 cut(s)	175
MluCI	AATT	3 cut(s)	515, 524, 639
MlyI	GAGTC	1 cut(s)	707
MmeI	TCCRAC	1 cut(s)	487
MroI	TCCGGA	1 cut(s)	208
MroXI	GAANNNNTTC	3 cut(s)	216, 515, 630
MseI	TTAA	3 cut(s)	560, 600, 951
MspA1I	CMGCKG	1 cut(s)	197
MspI	CCGG	2 cut(s)	209, 761
MspR9I	CCNGG	6 cut(s)	112, 667, 786, 817, 831, 937
MvaI	CCWGG	6 cut(s)	112, 667, 786, 817, 831, 937
MwoI	GCNNNNNNNGC	3 cut(s)	563, 572, 686
NdeII	GATC	3 cut(s)	175, 307, 442
NlaIII	CATG	3 cut(s)	151, 368, 663
NlaIV	GGNNCC	2 cut(s)	590, 606
NspI	RCATGY	2 cut(s)	151, 368
PciI	ACATGT	1 cut(s)	364
PciSI	GCTCTTC	1 cut(s)	207
PdmI	GAANNNNTTC	3 cut(s)	216, 515, 630
PfeI	GAWTC	4 cut(s)	138, 415, 740, 770
PkrI	GCNGC	5 cut(s)	41, 196, 199, 541, 961
PleI	GAGTC	1 cut(s)	706
PpsI	GAGTC	1 cut(s)	706
PscI	ACATGT	1 cut(s)	364
Psp6I	CCWGG	6 cut(s)	110, 665, 784, 815, 829, 935
PspGI	CCWGG	6 cut(s)	110, 665, 784, 815, 829, 935
PspN4I	GGNNCC	2 cut(s)	590, 606
PspPI	GGNCC	1 cut(s)	4
PstNI	CAGNNNCTG	1 cut(s)	575
PsuI	RGATCY	1 cut(s)	175
RsaI	GTAC	3 cut(s)	109, 238, 783
RsaNI	GTAC	3 cut(s)	108, 237, 782
SapI	GCTCTTC	1 cut(s)	207
SaqAI	TTAA	3 cut(s)	560, 600, 951
SatI	GCNGC	5 cut(s)	40, 195, 198, 540, 960
Sau3AI	GATC	3 cut(s)	175, 307, 442
Sau96I	GGNCC	1 cut(s)	4
ScaI	AGTACT	1 cut(s)	238
SchI	GAGTC	1 cut(s)	707
ScrFI	CCNGG	6 cut(s)	112, 667, 786, 817, 831, 937
SexAI	ACCWGGT	1 cut(s)	665
SfaNI	GCATC	3 cut(s)	145, 665, 889
SmlI	CTYRAG	1 cut(s)	859
SmoI	CTYRAG	1 cut(s)	859
Sse9I	AATT	3 cut(s)	515, 524, 639
SsiI	CCGC	2 cut(s)	39, 195
SspMI	CTAG	2 cut(s)	543, 918
StyD4I	CCNGG	6 cut(s)	110, 665, 784, 815, 829, 935
StyI	CCWWGG	1 cut(s)	765
TaqI	TCGA	5 cut(s)	92, 230, 401, 480, 773
TasI	AATT	3 cut(s)	515, 524, 639
TatI	WGTACW	1 cut(s)	236
TauI	GCSGC	2 cut(s)	42, 197
TfiI	GAWTC	4 cut(s)	138, 415, 740, 770
Tru1I	TTAA	3 cut(s)	560, 600, 951
Tru9I	TTAA	3 cut(s)	560, 600, 951
TscAI	CASTG	3 cut(s)	292, 498, 590
TseI	GCWGC	3 cut(s)	197, 539, 959
TspDTI	ATGAA	2 cut(s)	548, 912
TspGWI	ACGGA	1 cut(s)	884
TspRI	CASTG	3 cut(s)	292, 498, 590
XceI	RCATGY	2 cut(s)	151, 368
XmnI	GAANNNNTTC	3 cut(s)	216, 515, 630
XspI	CTAG	2 cut(s)	543, 918
ZrmI	AGTACT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.