Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003213

Physical Location & Seq

Genomic Coordinates Forward (+)

13111472 .. 13115165

Gene Structure 3694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00091600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGAAGCGATTGATGCCTGTCCTTTCAAGATTATGCTCTCAAAGATATGCTTGGGATGGTGATATGGCAAACTTATGTTTGGTTAACTTGGTTGATCATATCATTGCTTGTCTCCAACAACCATATTCACTCGATTGTATTCCAGTGGAAGCAGAGTATCAGAAACAATTCTCTGAATTACTGATGAAGGCTGCTAGAGATTATGGAGCATTAACAGCTTCAGTTGCCGATTTCCGGTGGAGCGAGACGTTTAAGGAGCCTCCTTCAGTATGGGGGGAAATGCTTCGTCCAATTCCTGTTGCCTTAGCGTCATGCACCAGGTTTTTCGAAGCAATGTCTGCTATGAGGGAATCGTTTGCAACACTTCAACATCTTAGAGATTGTATCATTGCTCATCTCCAACAGCCATATTCACTCGATTGCATTCCAGTGGAAGCAGAGTATCAGAAACAATTCTCAGAATTACTGGTGAAGGCTGCTAGTGATTATGGAGCATTAACAGCATCAGTTGCCGATTTCCAGTGGAGCCAGACATTTAAGGAGCCTCCTTCAGTATGGGGGGAAATGCTTCGTCCAATTCATGTTGCCTTAGCATCATGCACCCAGTTTTTTGAAGCAATATCTGCTATGAGGGAATCGTTTGCAACACTTCAACATCTCAGCGTAGGTCATTCTGATACCGCTTCACCTATCACACCAGCCAAGGAATCCAGAAGAGTACCAGGGGTTTCCGATTGTGGAACTCCGCCTGCCTGGAAAACCGAACCAAGCTTTGATGACTTAGCTATCAAAAGCTCAAGAAGGCCGGATATCAAGCATCAAGAAGCAGAGGATGAAAGTGAGCTGGACGGCTCTAGCCATAGGAGATTGTCATGGCTCCCTTCAGTTAAAAAGGCTGCCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007049 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022607 GO:0031109 GO:0032506 GO:0034622 GO:0043933 GO:0044085 GO:0046785 GO:0051258 GO:0051301 GO:0061640 GO:0065003 GO:0071840 GO:0097435 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS2

Protein Analysis

301

Amino Acids

33.74

Weight (kDa)

5.53

Isoelectric Point (pI)

60.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAUS2	PF15003	32 - 121	8.7e-41	HAUS augmin-like complex subunit 2
HAUS2	PF15003	126 - 216	2.1e-41	HAUS augmin-like complex subunit 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32980
fragaria_vesca	FvH4_6g42360
malus_domestica	MD09G1113600.v1.1 MD17G1103700.v1.1
prunus_persica	Prupe.3G211000_v2.0.a1 Prupe.3G211000_v2.0.a1
pyrus_communis	pycom09g03770 pycom17g09780
rosa_chinensis	RchiOBHm_Chr1g0329411 RchiOBHm_Chr1g0361251 RchiOBHm_Chr2g0158231 RchiOBHm_Chr2g0158271
rosa_laevigata	RLG00000021067 RLG00000021072 RLG00000029885 RLG00000029893
rosa_multiflora	Rmu_sc0003151.1_g000015 Rmu_sc0005982.1_g000004 Rmu_sc0007763.1_g000001 Rmu_sc0008904.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091550 Rroxscaffold_2G00091600
rosa_rugosa	Rorug01G0079600 Rorug01G0079700 Rorug01G0079700 Rorug02G0466400 Rorug02G0466500
rosa_samantha	Rh1BG078100 Rh1CG094800 Rh2BG546600 Rh2CG516500 Rh2CG516800 Rh3BG302100 Rh5BG556200
rosa_wichuraiana	Rw2G044040 Rw2G044090 Rw2G044110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	681, 746
AcuI	CTGAAG	4 cut(s)	204, 249, 534, 867
AfaI	GTAC	1 cut(s)	720
AfiI	CCNNNNNNNGG	1 cut(s)	234
AgsI	TTSAA	4 cut(s)	27, 368, 614, 653
AjnI	CCWGG	3 cut(s)	317, 721, 752
AluBI	AGCT	5 cut(s)	218, 771, 785, 795, 844
AluI	AGCT	5 cut(s)	218, 771, 785, 795, 844
Alw26I	GTCTC	2 cut(s)	116, 239
AoxI	GGCC	1 cut(s)	803
ApeKI	GCWGC	3 cut(s)	191, 476, 896
Asp700I	GAANNNNTTC	4 cut(s)	167, 282, 452, 567
AsuHPI	GGTGA	3 cut(s)	71, 481, 678
AsuII	TTCGAA	1 cut(s)	327
BbvI	GCAGC	3 cut(s)	178, 463, 883
BccI	CCATC	1 cut(s)	50
BceAI	ACGGC	1 cut(s)	865
BciT130I	CCWGG	3 cut(s)	319, 723, 754
BclI	TGATCA	1 cut(s)	94
BcoDI	GTCTC	2 cut(s)	116, 239
BfaI	CTAG	3 cut(s)	195, 480, 855
BisI	GCNGC	3 cut(s)	192, 477, 897
BlsI	GCNGC	3 cut(s)	193, 478, 898
Bme1390I	CCNGG	3 cut(s)	319, 723, 754
BmiI	GGNNCC	4 cut(s)	258, 527, 543, 878
BmrFI	CCNGG	3 cut(s)	319, 723, 754
BmrI	ACTGGG	1 cut(s)	598
BmsI	GCATC	4 cut(s)	3, 512, 602, 826
BmuI	ACTGGG	1 cut(s)	598
Bpu10I	CCTNAGC	2 cut(s)	304, 589
Bpu14I	TTCGAA	1 cut(s)	327
BpuEI	CTTGAG	1 cut(s)	781
BsaJI	CCNNGG	2 cut(s)	702, 722
BsaWI	WCCGGW	1 cut(s)	234
Bsc4I	CCNNNNNNNGG	1 cut(s)	234
Bse1I	ACTGG	5 cut(s)	143, 428, 471, 520, 604
Bse3DI	GCAATG	3 cut(s)	102, 339, 387
BseBI	CCWGG	3 cut(s)	319, 723, 754
BseDI	CCNNGG	2 cut(s)	702, 722
BseGI	GGATG	2 cut(s)	61, 838
BseLI	CCNNNNNNNGG	1 cut(s)	234
BseMI	GCAATG	3 cut(s)	102, 339, 387
BseMII	CTCAG	2 cut(s)	471, 673
BseNI	ACTGG	5 cut(s)	143, 428, 471, 520, 604
BseXI	GCAGC	3 cut(s)	178, 463, 883
BshFI	GGCC	1 cut(s)	805
BsiSI	CCGG	2 cut(s)	235, 806
BslI	CCNNNNNNNGG	1 cut(s)	234
BsmAI	GTCTC	2 cut(s)	116, 239
BsmBI	CGTCTC	1 cut(s)	239
BsmI	GAATGC	1 cut(s)	423
BsnI	GGCC	1 cut(s)	805
Bsp119I	TTCGAA	1 cut(s)	327
Bsp143I	GATC	1 cut(s)	94
BspACI	CCGC	2 cut(s)	681, 746
BspANI	GGCC	1 cut(s)	805
BspCNI	CTCAG	2 cut(s)	470, 672
BspLI	GGNNCC	4 cut(s)	258, 527, 543, 878
BspT104I	TTCGAA	1 cut(s)	327
BsrDI	GCAATG	3 cut(s)	102, 339, 387
BsrI	ACTGG	5 cut(s)	143, 428, 471, 520, 604
BssECI	CCNNGG	2 cut(s)	702, 722
BssMI	GATC	1 cut(s)	94
BssT1I	CCWWGG	1 cut(s)	702
Bst2UI	CCWGG	3 cut(s)	319, 723, 754
Bst6I	CTCTTC	1 cut(s)	709
BstAPI	GCANNNNNTGC	3 cut(s)	338, 509, 623
BstBI	TTCGAA	1 cut(s)	327
BstC8I	GCNNGC	1 cut(s)	750
BstDEI	CTNAG	6 cut(s)	304, 374, 457, 589, 659, 781
BstF5I	GGATG	2 cut(s)	61, 838
BstKTI	GATC	1 cut(s)	97
BstMAI	GTCTC	2 cut(s)	116, 239
BstMBI	GATC	1 cut(s)	94
BstMWI	GCNNNNNNNGC	7 cut(s)	13, 215, 224, 338, 500, 509, 623
BstNI	CCWGG	3 cut(s)	319, 723, 754
BstSCI	CCNGG	3 cut(s)	317, 721, 752
BstV1I	GCAGC	3 cut(s)	178, 463, 883
BsuRI	GGCC	1 cut(s)	805
BtsCI	GGATG	2 cut(s)	61, 838
BtsIMutI	CAGTG	3 cut(s)	150, 435, 527
Cac8I	GCNNGC	1 cut(s)	750
CseI	GACGC	1 cut(s)	297
CsiI	ACCWGGT	1 cut(s)	317
Csp6I	GTAC	1 cut(s)	719
CviAII	CATG	4 cut(s)	312, 581, 597, 873
CviQI	GTAC	1 cut(s)	719
DdeI	CTNAG	6 cut(s)	304, 374, 457, 589, 659, 781
DpnI	GATC	1 cut(s)	96
DpnII	GATC	1 cut(s)	94
Eam1104I	CTCTTC	1 cut(s)	709
EarI	CTCTTC	1 cut(s)	709
EciI	GGCGGA	1 cut(s)	735
Eco130I	CCWWGG	1 cut(s)	702
Eco32I	GATATC	1 cut(s)	811
Eco57I	CTGAAG	4 cut(s)	204, 249, 534, 867
EcoRII	CCWGG	3 cut(s)	317, 721, 752
EcoRV	GATATC	1 cut(s)	811
EcoT14I	CCWWGG	1 cut(s)	702
ErhI	CCWWGG	1 cut(s)	702
Esp3I	CGTCTC	1 cut(s)	239
FaeI	CATG	4 cut(s)	315, 584, 600, 876
FalI	AAGNNNNNCTT	2 cut(s)	34, 66
FatI	CATG	4 cut(s)	311, 580, 596, 872
FbaI	TGATCA	1 cut(s)	94
Fnu4HI	GCNGC	3 cut(s)	192, 477, 897
FokI	GGATG	2 cut(s)	68, 845
Fsp4HI	GCNGC	3 cut(s)	192, 477, 897
FspBI	CTAG	3 cut(s)	195, 480, 855
GluI	GCNGC	3 cut(s)	192, 477, 897
HaeIII	GGCC	1 cut(s)	805
HapII	CCGG	2 cut(s)	235, 806
HgaI	GACGC	1 cut(s)	297
Hin1II	CATG	4 cut(s)	315, 584, 600, 876
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HindIII	AAGCTT	1 cut(s)	769
HinfI	GANTC	3 cut(s)	350, 635, 707
HpaI	GTTAAC	1 cut(s)	85
HpaII	CCGG	2 cut(s)	235, 806
HphI	GGTGA	3 cut(s)	71, 481, 678
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	6 cut(s)	162, 175, 447, 460, 676, 733
Hpy188III	TCNNGA	4 cut(s)	27, 711, 798, 821
Hpy8I	GTNNAC	1 cut(s)	85
HpyAV	CCTTC	6 cut(s)	181, 273, 466, 558, 795, 891
HpyCH4IV	ACGT	1 cut(s)	248
HpyCH4V	TGCA	5 cut(s)	315, 359, 423, 600, 644
HpyF10VI	GCNNNNNNNGC	7 cut(s)	13, 215, 224, 338, 500, 509, 623
HpyF3I	CTNAG	6 cut(s)	304, 374, 457, 589, 659, 781
HpySE526I	ACGT	1 cut(s)	248
Hsp92II	CATG	4 cut(s)	315, 584, 600, 876
Ksp22I	TGATCA	1 cut(s)	94
KspAI	GTTAAC	1 cut(s)	85
Kzo9I	GATC	1 cut(s)	94
LmnI	GCTCC	7 cut(s)	206, 240, 256, 491, 525, 541, 882
Lsp1109I	GCAGC	3 cut(s)	178, 463, 883
LweI	GCATC	4 cut(s)	3, 512, 602, 826
MabI	ACCWGGT	1 cut(s)	317
MaeI	CTAG	3 cut(s)	195, 480, 855
MaeII	ACGT	1 cut(s)	248
MalI	GATC	1 cut(s)	96
MboI	GATC	1 cut(s)	94
MboII	GAAGA	1 cut(s)	726
MluCI	AATT	6 cut(s)	167, 176, 291, 452, 461, 576
MmeI	TCCRAC	2 cut(s)	139, 424
MnlI	CCTC	5 cut(s)	270, 339, 555, 624, 823
MroXI	GAANNNNTTC	4 cut(s)	167, 282, 452, 567
MseI	TTAA	7 cut(s)	84, 212, 252, 497, 537, 888, 904
MslI	CAYNNNNRTG	1 cut(s)	428
MspI	CCGG	2 cut(s)	235, 806
MspR9I	CCNGG	3 cut(s)	319, 723, 754
Mva1269I	GAATGC	1 cut(s)	423
MvaI	CCWGG	3 cut(s)	319, 723, 754
MwoI	GCNNNNNNNGC	7 cut(s)	13, 215, 224, 338, 500, 509, 623
NdeII	GATC	1 cut(s)	94
NlaIII	CATG	4 cut(s)	315, 584, 600, 876
NlaIV	GGNNCC	4 cut(s)	258, 527, 543, 878
NspV	TTCGAA	1 cut(s)	327
PctI	GAATGC	1 cut(s)	423
PdmI	GAANNNNTTC	4 cut(s)	167, 282, 452, 567
PfeI	GAWTC	3 cut(s)	350, 635, 707
PkrI	GCNGC	3 cut(s)	193, 478, 898
Psp6I	CCWGG	3 cut(s)	317, 721, 752
PspGI	CCWGG	3 cut(s)	317, 721, 752
PspN4I	GGNNCC	4 cut(s)	258, 527, 543, 878
RsaI	GTAC	1 cut(s)	720
RsaNI	GTAC	1 cut(s)	719
RseI	CAYNNNNRTG	1 cut(s)	428
SaqAI	TTAA	7 cut(s)	84, 212, 252, 497, 537, 888, 904
SatI	GCNGC	3 cut(s)	192, 477, 897
Sau3AI	GATC	1 cut(s)	94
ScrFI	CCNGG	3 cut(s)	319, 723, 754
SetI	ASST	9 cut(s)	220, 251, 323, 670, 691, 773, 787, 797, 846
SexAI	ACCWGGT	1 cut(s)	317
SfaNI	GCATC	4 cut(s)	3, 512, 602, 826
SfuI	TTCGAA	1 cut(s)	327
SmiMI	CAYNNNNRTG	1 cut(s)	428
SmlI	CTYRAG	1 cut(s)	796
SmoI	CTYRAG	1 cut(s)	796
Sse9I	AATT	6 cut(s)	167, 176, 291, 452, 461, 576
SsiI	CCGC	2 cut(s)	681, 746
SspMI	CTAG	3 cut(s)	195, 480, 855
StyD4I	CCNGG	3 cut(s)	317, 721, 752
StyI	CCWWGG	1 cut(s)	702
TaiI	ACGT	1 cut(s)	251
TaqI	TCGA	3 cut(s)	132, 327, 417
TasI	AATT	6 cut(s)	167, 176, 291, 452, 461, 576
TfiI	GAWTC	3 cut(s)	350, 635, 707
Tru1I	TTAA	7 cut(s)	84, 212, 252, 497, 537, 888, 904
Tru9I	TTAA	7 cut(s)	84, 212, 252, 497, 537, 888, 904
TscAI	CASTG	3 cut(s)	150, 435, 527
TseI	GCWGC	3 cut(s)	191, 476, 896
TspDTI	ATGAA	4 cut(s)	17, 200, 569, 849
TspRI	CASTG	3 cut(s)	150, 435, 527
XmnI	GAANNNNTTC	4 cut(s)	167, 282, 452, 567
XspI	CTAG	3 cut(s)	195, 480, 855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.