Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003213

Physical Location & Seq

Genomic Coordinates Reverse (-)

50727038 .. 50727986

Gene Structure 949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029885

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGTCCGATGCTCTCTCCATTGCTTCAGATCTTGGTTTCTCAGTCGCCGCTGCTCCGACTCCAGAAGAGCTTCAGAACTGGTCAAGTAGTACTGGTGAGAAAGATGATGACTTGATAAGGGTTTCGAGGGAACTTACCAGTGTGCAAAGGAAAATAGCAGATCTGCAAGTTGACCTTCAAGGGAGAAAATATTACTACGATCTTAAAAGATGTCATTCAGAACAAGTTTTTTTTAATGTATATGTTGACGATTCTTCTGCTGTATGTTGGATTCCCATCACACCAGCCAAGGATTCTAGAAGAGTACCAGGCGTTTCTGATTGTGTAACTCCACCTCCCTGGAAATCTGAACCAAGCTTTGATGACTTGGCTATCAAAAGCTCAAGAAGGTCAGATATCAAGCATCAAGAAGCAGAGGATGAAAGTGAGCTGGACGGCTCTAGCCATAAGAGATTGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007049 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022607 GO:0031109 GO:0032506 GO:0034622 GO:0043933 GO:0044085 GO:0046785 GO:0051258 GO:0051301 GO:0061640 GO:0065003 GO:0071840 GO:0097435 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS2

Protein Analysis

154

Amino Acids

17.14

Weight (kDa)

4.85

Isoelectric Point (pI)

67.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAUS2	PF15003	1 - 64	4.2e-14	HAUS augmin-like complex subunit 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32980
fragaria_vesca	FvH4_6g42360
malus_domestica	MD09G1113600.v1.1 MD17G1103700.v1.1
prunus_persica	Prupe.3G211000_v2.0.a1 Prupe.3G211000_v2.0.a1
pyrus_communis	pycom09g03770 pycom17g09780
rosa_chinensis	RchiOBHm_Chr1g0329411 RchiOBHm_Chr1g0361251 RchiOBHm_Chr2g0158231 RchiOBHm_Chr2g0158271
rosa_laevigata	RLG00000021067 RLG00000021072 RLG00000029885 RLG00000029893
rosa_multiflora	Rmu_sc0003151.1_g000015 Rmu_sc0005982.1_g000004 Rmu_sc0007763.1_g000001 Rmu_sc0008904.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091550 Rroxscaffold_2G00091600
rosa_rugosa	Rorug01G0079600 Rorug01G0079700 Rorug01G0079700 Rorug02G0466400 Rorug02G0466500
rosa_samantha	Rh1BG078100 Rh1CG094800 Rh2BG546600 Rh2CG516500 Rh2CG516800 Rh3BG302100 Rh5BG556200
rosa_wichuraiana	Rw2G044040 Rw2G044090 Rw2G044110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	48
AcuI	CTGAAG	2 cut(s)	9, 56
AfaI	GTAC	2 cut(s)	91, 306
AgsI	TTSAA	1 cut(s)	179
AjnI	CCWGG	2 cut(s)	307, 338
AluBI	AGCT	4 cut(s)	70, 357, 381, 430
AluI	AGCT	4 cut(s)	70, 357, 381, 430
ApeKI	GCWGC	1 cut(s)	50
Asp700I	GAANNNNTTC	1 cut(s)	69
AsuHPI	GGTGA	1 cut(s)	107
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	1 cut(s)	284
BceAI	ACGGC	1 cut(s)	451
BcgI	CGANNNNNNTGC	2 cut(s)	239, 273
BciT130I	CCWGG	2 cut(s)	309, 340
BfaI	CTAG	2 cut(s)	297, 441
BglII	AGATCT	2 cut(s)	28, 160
BisI	GCNGC	2 cut(s)	48, 51
BlsI	GCNGC	2 cut(s)	49, 52
BmcAI	AGTACT	1 cut(s)	91
Bme1390I	CCNGG	2 cut(s)	309, 340
BmrFI	CCNGG	2 cut(s)	309, 340
BmsI	GCATC	1 cut(s)	412
BpmI	CTGGAG	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	367
BsaBI	GATNNNNATC	1 cut(s)	275
BsaJI	CCNNGG	2 cut(s)	288, 338
BsaXI	ACNNNNNCTCC	2 cut(s)	319, 349
Bse1I	ACTGG	3 cut(s)	83, 97, 138
Bse3DI	GCAATG	1 cut(s)	18
Bse8I	GATNNNNATC	1 cut(s)	275
BseBI	CCWGG	2 cut(s)	309, 340
BseDI	CCNNGG	2 cut(s)	288, 338
BseGI	GGATG	1 cut(s)	424
BseJI	GATNNNNATC	1 cut(s)	275
BseMI	GCAATG	1 cut(s)	18
BseMII	CTCAG	1 cut(s)	54
BseNI	ACTGG	3 cut(s)	83, 97, 138
BseXI	GCAGC	1 cut(s)	37
Bsp143I	GATC	3 cut(s)	28, 160, 199
BspACI	CCGC	1 cut(s)	48
BspCNI	CTCAG	1 cut(s)	53
BspHI	TCATGA	1 cut(s)	458
BspQI	GCTCTTC	1 cut(s)	60
BsrDI	GCAATG	1 cut(s)	18
BsrI	ACTGG	3 cut(s)	83, 97, 138
BssECI	CCNNGG	2 cut(s)	288, 338
BssMI	GATC	3 cut(s)	28, 160, 199
BssT1I	CCWWGG	1 cut(s)	288
Bst2UI	CCWGG	2 cut(s)	309, 340
Bst6I	CTCTTC	2 cut(s)	60, 295
BstDEI	CTNAG	1 cut(s)	40
BstF5I	GGATG	1 cut(s)	424
BstKTI	GATC	3 cut(s)	31, 163, 202
BstMBI	GATC	3 cut(s)	28, 160, 199
BstNI	CCWGG	2 cut(s)	309, 340
BstSCI	CCNGG	2 cut(s)	307, 338
BstV1I	GCAGC	1 cut(s)	37
BstX2I	RGATCY	2 cut(s)	28, 160
BstXI	CCANNNNNNTGG	1 cut(s)	339
BstYI	RGATCY	2 cut(s)	28, 160
BtsCI	GGATG	1 cut(s)	424
BtsIMutI	CAGTG	1 cut(s)	145
CciI	TCATGA	1 cut(s)	458
Csp6I	GTAC	2 cut(s)	90, 305
CviAII	CATG	1 cut(s)	459
CviJI	RGCY	8 cut(s)	70, 287, 357, 371, 381, 430, 438, 444
CviKI_1	RGCY	8 cut(s)	70, 287, 357, 371, 381, 430, 438, 444
CviQI	GTAC	2 cut(s)	90, 305
DdeI	CTNAG	1 cut(s)	40
DpnI	GATC	3 cut(s)	30, 162, 201
DpnII	GATC	3 cut(s)	28, 160, 199
Eam1104I	CTCTTC	2 cut(s)	60, 295
EarI	CTCTTC	2 cut(s)	60, 295
Eco130I	CCWWGG	1 cut(s)	288
Eco32I	GATATC	1 cut(s)	397
Eco57I	CTGAAG	2 cut(s)	9, 56
EcoRII	CCWGG	2 cut(s)	307, 338
EcoRV	GATATC	1 cut(s)	397
EcoT14I	CCWWGG	1 cut(s)	288
ErhI	CCWWGG	1 cut(s)	288
FaeI	CATG	1 cut(s)	462
FaiI	YATR	5 cut(s)	241, 243, 265, 447, 460
FalI	AAGNNNNNCTT	2 cut(s)	159, 191
FatI	CATG	1 cut(s)	458
Fnu4HI	GCNGC	2 cut(s)	48, 51
FokI	GGATG	1 cut(s)	431
Fsp4HI	GCNGC	2 cut(s)	48, 51
FspBI	CTAG	2 cut(s)	297, 441
GluI	GCNGC	2 cut(s)	48, 51
GsuI	CTGGAG	1 cut(s)	45
Hin1II	CATG	1 cut(s)	462
HincII	GTYRAC	2 cut(s)	172, 247
HindII	GTYRAC	2 cut(s)	172, 247
HindIII	AAGCTT	1 cut(s)	355
HinfI	GANTC	4 cut(s)	58, 251, 271, 293
HphI	GGTGA	1 cut(s)	107
Hpy166II	GTNNAC	2 cut(s)	172, 247
Hpy188I	TCNGA	8 cut(s)	7, 28, 57, 75, 220, 319, 349, 394
Hpy188III	TCNNGA	5 cut(s)	62, 297, 384, 407, 459
Hpy8I	GTNNAC	2 cut(s)	172, 247
HpyAV	CCTTC	2 cut(s)	185, 381
HpyCH4V	TGCA	2 cut(s)	145, 166
HpyF3I	CTNAG	1 cut(s)	40
Hsp92II	CATG	1 cut(s)	462
Kzo9I	GATC	3 cut(s)	28, 160, 199
LguI	GCTCTTC	1 cut(s)	60
LmnI	GCTCC	1 cut(s)	58
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	1 cut(s)	412
MaeI	CTAG	2 cut(s)	297, 441
MaeIII	GTNAC	1 cut(s)	325
MalI	GATC	3 cut(s)	30, 162, 201
MboI	GATC	3 cut(s)	28, 160, 199
MboII	GAAGA	3 cut(s)	77, 246, 312
MflI	RGATCY	2 cut(s)	28, 160
MlyI	GAGTC	1 cut(s)	52
MmeI	TCCRAC	2 cut(s)	80, 248
MnlI	CCTC	3 cut(s)	120, 345, 409
MroXI	GAANNNNTTC	1 cut(s)	69
MseI	TTAA	2 cut(s)	204, 234
MspA1I	CMGCKG	1 cut(s)	50
MspR9I	CCNGG	2 cut(s)	309, 340
MvaI	CCWGG	2 cut(s)	309, 340
NdeII	GATC	3 cut(s)	28, 160, 199
NlaIII	CATG	1 cut(s)	462
PagI	TCATGA	1 cut(s)	458
PciSI	GCTCTTC	1 cut(s)	60
PdmI	GAANNNNTTC	1 cut(s)	69
PfeI	GAWTC	3 cut(s)	251, 271, 293
PkrI	GCNGC	2 cut(s)	49, 52
PleI	GAGTC	1 cut(s)	52
PpsI	GAGTC	1 cut(s)	52
Psp6I	CCWGG	2 cut(s)	307, 338
PspGI	CCWGG	2 cut(s)	307, 338
PsuI	RGATCY	2 cut(s)	28, 160
RsaI	GTAC	2 cut(s)	91, 306
RsaNI	GTAC	2 cut(s)	90, 305
SapI	GCTCTTC	1 cut(s)	60
SaqAI	TTAA	2 cut(s)	204, 234
SatI	GCNGC	2 cut(s)	48, 51
Sau3AI	GATC	3 cut(s)	28, 160, 199
ScaI	AGTACT	1 cut(s)	91
SchI	GAGTC	1 cut(s)	52
ScrFI	CCNGG	2 cut(s)	309, 340
SetI	ASST	7 cut(s)	72, 177, 337, 359, 383, 392, 432
SfaNI	GCATC	1 cut(s)	412
SmlI	CTYRAG	1 cut(s)	382
SmoI	CTYRAG	1 cut(s)	382
SsiI	CCGC	1 cut(s)	48
SspI	AATATT	1 cut(s)	191
SspMI	CTAG	2 cut(s)	297, 441
StyD4I	CCNGG	2 cut(s)	307, 338
StyI	CCWWGG	1 cut(s)	288
TaqI	TCGA	1 cut(s)	125
TatI	WGTACW	1 cut(s)	89
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	3 cut(s)	251, 271, 293
Tru1I	TTAA	2 cut(s)	204, 234
Tru9I	TTAA	2 cut(s)	204, 234
TscAI	CASTG	1 cut(s)	145
TseI	GCWGC	1 cut(s)	50
TspDTI	ATGAA	1 cut(s)	435
TspRI	CASTG	1 cut(s)	145
XbaI	TCTAGA	1 cut(s)	296
XmnI	GAANNNNTTC	1 cut(s)	69
XspI	CTAG	2 cut(s)	297, 441
ZrmI	AGTACT	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.