Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003213

Physical Location & Seq

Genomic Coordinates Reverse (-)

71620124 .. 71640011

Gene Structure 19888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021067

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTGGATGAGGAATGCCAGATTGTCACAGGATGATAAAAATGTATCACATTTGACACATGTGACCGAAATGGAAAAGAAGTGTGAAACTCTATCAAGGATTACTATGATTTTAAAAGATGTCATTCAGAACAAGAAACAATTCTCTGAATTACTGATGAAGGCTGCTAGTGATTATGGAGCATTAACAGCTTCAGTTGCCGATTTCCAGTGGAGCCAGACATTTAAGGAGCCACCTTCAGTATGGGGAGAATTCGTTCGTCCAATTCCTGTTGCCTTAGCATCATGCACCAAGTTTTTTGAAGCAATGTCGTTTGCAACACTTCAGCATCTCGGAGCAGGTCATTCTGATACTGCTTCTCCCATCAGACCTGCCAAGGATTCCAGAAGAGTACCAGGGCTTTCCAATTGTGTAACTCCACCTCCCTGGAAAACCGAACCAAGCTTTGATGACTTGGCTATCAAAAGCTCAAGAAGGACGGATATCAAGCATCAAGAAGCAGAAGATGGAAGTGAGCTGGACGGCTCTAGCCATAGGAGATTGTCAAGGCCTCCTTCAGTTAAAAAGGCTGCTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007049 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022607 GO:0031109 GO:0032506 GO:0034622 GO:0043933 GO:0044085 GO:0046785 GO:0051258 GO:0051301 GO:0061640 GO:0065003 GO:0071840 GO:0097435 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS2

Protein Analysis

193

Amino Acids

21.44

Weight (kDa)

9.01

Isoelectric Point (pI)

57.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAUS2	PF15003	8 - 46	7.7e-11	HAUS augmin-like complex subunit 2
HAUS2	PF15003	45 - 104	3.7e-23	HAUS augmin-like complex subunit 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32980
fragaria_vesca	FvH4_6g42360
malus_domestica	MD09G1113600.v1.1 MD17G1103700.v1.1
prunus_persica	Prupe.3G211000_v2.0.a1 Prupe.3G211000_v2.0.a1
pyrus_communis	pycom09g03770 pycom17g09780
rosa_chinensis	RchiOBHm_Chr1g0329411 RchiOBHm_Chr1g0361251 RchiOBHm_Chr2g0158231 RchiOBHm_Chr2g0158271
rosa_laevigata	RLG00000021067 RLG00000021072 RLG00000029885 RLG00000029893
rosa_multiflora	Rmu_sc0003151.1_g000015 Rmu_sc0005982.1_g000004 Rmu_sc0007763.1_g000001 Rmu_sc0008904.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091550 Rroxscaffold_2G00091600
rosa_rugosa	Rorug01G0079600 Rorug01G0079700 Rorug01G0079700 Rorug02G0466400 Rorug02G0466500
rosa_samantha	Rh1BG078100 Rh1CG094800 Rh2BG546600 Rh2CG516500 Rh2CG516800 Rh3BG302100 Rh5BG556200
rosa_wichuraiana	Rw2G044040 Rw2G044090 Rw2G044110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	329, 379
AcsI	RAATTY	1 cut(s)	251
AcuI	CTGAAG	4 cut(s)	177, 222, 308, 540
AfaI	GTAC	1 cut(s)	393
AflIII	ACRYGT	1 cut(s)	58
AgsI	TTSAA	1 cut(s)	302
AjnI	CCWGG	2 cut(s)	394, 425
AloI	GAACNNNNNNTCC	2 cut(s)	240, 272
AluBI	AGCT	4 cut(s)	191, 444, 468, 517
AluI	AGCT	4 cut(s)	191, 444, 468, 517
AoxI	GGCC	1 cut(s)	548
ApeKI	GCWGC	2 cut(s)	164, 569
ApoI	RAATTY	1 cut(s)	251
Asp700I	GAANNNNTTC	2 cut(s)	140, 255
BbvI	GCAGC	2 cut(s)	151, 556
BccI	CCATC	2 cut(s)	371, 500
BceAI	ACGGC	1 cut(s)	538
BciT130I	CCWGG	2 cut(s)	396, 427
BfaI	CTAG	2 cut(s)	168, 528
BfuAI	ACCTGC	2 cut(s)	329, 379
BisI	GCNGC	2 cut(s)	165, 570
BlsI	GCNGC	2 cut(s)	166, 571
Bme1390I	CCNGG	2 cut(s)	396, 427
BmiI	GGNNCC	2 cut(s)	215, 231
BmrFI	CCNGG	2 cut(s)	396, 427
BmsI	GCATC	3 cut(s)	290, 337, 499
Bpu10I	CCTNAGC	1 cut(s)	277
BpuEI	CTTGAG	1 cut(s)	454
BsaJI	CCNNGG	3 cut(s)	375, 395, 425
BsaXI	ACNNNNNCTCC	6 cut(s)	240, 270, 343, 373, 406, 436
Bse1I	ACTGG	1 cut(s)	208
Bse3DI	GCAATG	1 cut(s)	312
BseBI	CCWGG	2 cut(s)	396, 427
BseDI	CCNNGG	3 cut(s)	375, 395, 425
BseGI	GGATG	2 cut(s)	12, 37
BseMI	GCAATG	1 cut(s)	312
BseNI	ACTGG	1 cut(s)	208
BseXI	GCAGC	2 cut(s)	151, 556
BshFI	GGCC	1 cut(s)	550
BsmI	GAATGC	1 cut(s)	19
BsnI	GGCC	1 cut(s)	550
BspANI	GGCC	1 cut(s)	550
BspLI	GGNNCC	2 cut(s)	215, 231
BspMI	ACCTGC	2 cut(s)	329, 379
BsrDI	GCAATG	1 cut(s)	312
BsrI	ACTGG	1 cut(s)	208
BssECI	CCNNGG	3 cut(s)	375, 395, 425
BssT1I	CCWWGG	1 cut(s)	375
Bst2UI	CCWGG	2 cut(s)	396, 427
Bst6I	CTCTTC	1 cut(s)	382
BstDEI	CTNAG	1 cut(s)	277
BstF5I	GGATG	2 cut(s)	12, 37
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 197
BstNI	CCWGG	2 cut(s)	396, 427
BstNSI	RCATGY	1 cut(s)	62
BstSCI	CCNGG	2 cut(s)	394, 425
BstV1I	GCAGC	2 cut(s)	151, 556
BstXI	CCANNNNNNTGG	1 cut(s)	426
BsuRI	GGCC	1 cut(s)	550
BtsCI	GGATG	2 cut(s)	12, 37
BtsIMutI	CAGTG	1 cut(s)	215
BveI	ACCTGC	2 cut(s)	329, 379
Csp6I	GTAC	1 cut(s)	392
CviAII	CATG	2 cut(s)	59, 285
CviQI	GTAC	1 cut(s)	392
DdeI	CTNAG	1 cut(s)	277
DraI	TTTAAA	1 cut(s)	114
Eam1104I	CTCTTC	1 cut(s)	382
EarI	CTCTTC	1 cut(s)	382
Eco130I	CCWWGG	1 cut(s)	375
Eco147I	AGGCCT	1 cut(s)	550
Eco32I	GATATC	1 cut(s)	484
Eco57I	CTGAAG	4 cut(s)	177, 222, 308, 540
EcoRI	GAATTC	1 cut(s)	251
EcoRII	CCWGG	2 cut(s)	394, 425
EcoRV	GATATC	1 cut(s)	484
EcoT14I	CCWWGG	1 cut(s)	375
ErhI	CCWWGG	1 cut(s)	375
FaeI	CATG	2 cut(s)	62, 288
FaiI	YATR	6 cut(s)	60, 107, 177, 244, 286, 534
FalI	AAGNNNNNCTT	2 cut(s)	538, 570
FatI	CATG	2 cut(s)	58, 284
Fnu4HI	GCNGC	2 cut(s)	165, 570
FokI	GGATG	2 cut(s)	19, 44
Fsp4HI	GCNGC	2 cut(s)	165, 570
FspBI	CTAG	2 cut(s)	168, 528
GluI	GCNGC	2 cut(s)	165, 570
HaeIII	GGCC	1 cut(s)	550
Hin1II	CATG	2 cut(s)	62, 288
HindIII	AAGCTT	1 cut(s)	442
HinfI	GANTC	1 cut(s)	380
Hpy188I	TCNGA	5 cut(s)	129, 148, 335, 349, 368
Hpy188III	TCNNGA	3 cut(s)	384, 471, 494
HpyAV	CCTTC	4 cut(s)	154, 246, 468, 564
HpyCH4V	TGCA	2 cut(s)	288, 317
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 197
HpyF3I	CTNAG	1 cut(s)	277
Hsp92II	CATG	2 cut(s)	62, 288
LmnI	GCTCC	4 cut(s)	179, 213, 229, 335
Lsp1109I	GCAGC	2 cut(s)	151, 556
LweI	GCATC	3 cut(s)	290, 337, 499
MaeI	CTAG	2 cut(s)	168, 528
MaeIII	GTNAC	3 cut(s)	24, 61, 412
MboII	GAAGA	2 cut(s)	399, 515
MfeI	CAATTG	1 cut(s)	406
MluCI	AATT	5 cut(s)	140, 149, 251, 264, 406
MnlI	CCTC	3 cut(s)	3, 432, 561
MroXI	GAANNNNTTC	2 cut(s)	140, 255
MseI	TTAA	5 cut(s)	113, 185, 225, 561, 577
MspR9I	CCNGG	2 cut(s)	396, 427
MunI	CAATTG	1 cut(s)	406
Mva1269I	GAATGC	1 cut(s)	19
MvaI	CCWGG	2 cut(s)	396, 427
MwoI	GCNNNNNNNGC	2 cut(s)	188, 197
NlaIII	CATG	2 cut(s)	62, 288
NlaIV	GGNNCC	2 cut(s)	215, 231
NmuCI	GTSAC	2 cut(s)	24, 61
NspI	RCATGY	1 cut(s)	62
PceI	AGGCCT	1 cut(s)	550
PciI	ACATGT	1 cut(s)	58
PctI	GAATGC	1 cut(s)	19
PdmI	GAANNNNTTC	2 cut(s)	140, 255
PfeI	GAWTC	1 cut(s)	380
PkrI	GCNGC	2 cut(s)	166, 571
PscI	ACATGT	1 cut(s)	58
Psp6I	CCWGG	2 cut(s)	394, 425
PspGI	CCWGG	2 cut(s)	394, 425
PspN4I	GGNNCC	2 cut(s)	215, 231
RsaI	GTAC	1 cut(s)	393
RsaNI	GTAC	1 cut(s)	392
SaqAI	TTAA	5 cut(s)	113, 185, 225, 561, 577
SatI	GCNGC	2 cut(s)	165, 570
ScrFI	CCNGG	2 cut(s)	396, 427
SetI	ASST	8 cut(s)	193, 238, 343, 373, 424, 446, 470, 519
SfaNI	GCATC	3 cut(s)	290, 337, 499
SmlI	CTYRAG	1 cut(s)	469
SmoI	CTYRAG	1 cut(s)	469
Sse9I	AATT	5 cut(s)	140, 149, 251, 264, 406
SseBI	AGGCCT	1 cut(s)	550
SspMI	CTAG	2 cut(s)	168, 528
StuI	AGGCCT	1 cut(s)	550
StyD4I	CCNGG	2 cut(s)	394, 425
StyI	CCWWGG	1 cut(s)	375
TaqII	GACCGA	1 cut(s)	80
TasI	AATT	5 cut(s)	140, 149, 251, 264, 406
TfiI	GAWTC	1 cut(s)	380
Tru1I	TTAA	5 cut(s)	113, 185, 225, 561, 577
Tru9I	TTAA	5 cut(s)	113, 185, 225, 561, 577
TscAI	CASTG	1 cut(s)	215
TseFI	GTSAC	2 cut(s)	24, 61
TseI	GCWGC	2 cut(s)	164, 569
Tsp45I	GTSAC	2 cut(s)	24, 61
TspDTI	ATGAA	1 cut(s)	173
TspGWI	ACGGA	1 cut(s)	494
TspRI	CASTG	1 cut(s)	215
XapI	RAATTY	1 cut(s)	251
XceI	RCATGY	1 cut(s)	62
XcmI	CCANNNNNNNNNTGG	1 cut(s)	240
XmnI	GAANNNNTTC	2 cut(s)	140, 255
XspI	CTAG	2 cut(s)	168, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.