Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007763.1

Orthogroup ID

OG0003213

Physical Location & Seq

Genomic Coordinates Reverse (-)

1234 .. 1575

Gene Structure 342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007763.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

atgcttcgtccaattcctgttgccttagcatcatgcacccggttttttgaagcaatatctgctatgagggaatcgtttgcaacacttcaacatctcagagtaggtcattctgataccgcttcacctatcacaccagccaaggaatccagaagagtaccaggggtttccgattgtgtaactccgcctccctggaaaactgaaccaagctttgatgacttagctatcaaaagctcaagaaggccggatatcaagcatcaagaagcagaggatgaaagtgagctggacggctctagccataggagattgtcatggcctccttcgattaaaaaggctgctacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007049 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022607 GO:0031109 GO:0032506 GO:0034622 GO:0043933 GO:0044085 GO:0046785 GO:0051258 GO:0051301 GO:0061640 GO:0065003 GO:0071840 GO:0097435 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS2

Protein Analysis

113

Amino Acids

12.52

Weight (kDa)

7.86

Isoelectric Point (pI)

72.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32980
fragaria_vesca	FvH4_6g42360
malus_domestica	MD09G1113600.v1.1 MD17G1103700.v1.1
prunus_persica	Prupe.3G211000_v2.0.a1 Prupe.3G211000_v2.0.a1
pyrus_communis	pycom09g03770 pycom17g09780
rosa_chinensis	RchiOBHm_Chr1g0329411 RchiOBHm_Chr1g0361251 RchiOBHm_Chr2g0158231 RchiOBHm_Chr2g0158271
rosa_laevigata	RLG00000021067 RLG00000021072 RLG00000029885 RLG00000029893
rosa_multiflora	Rmu_sc0003151.1_g000015 Rmu_sc0005982.1_g000004 Rmu_sc0007763.1_g000001 Rmu_sc0008904.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091550 Rroxscaffold_2G00091600
rosa_rugosa	Rorug01G0079600 Rorug01G0079700 Rorug01G0079700 Rorug02G0466400 Rorug02G0466500
rosa_samantha	Rh1BG078100 Rh1CG094800 Rh2BG546600 Rh2CG516500 Rh2CG516800 Rh3BG302100 Rh5BG556200
rosa_wichuraiana	Rw2G044040 Rw2G044090 Rw2G044110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	117, 182
AfaI	GTAC	1 cut(s)	156
AgsI	TTSAA	2 cut(s)	50, 89
AjnI	CCWGG	2 cut(s)	157, 188
AluBI	AGCT	4 cut(s)	207, 221, 231, 280
AluI	AGCT	4 cut(s)	207, 221, 231, 280
AoxI	GGCC	2 cut(s)	239, 311
ApeKI	GCWGC	1 cut(s)	332
AsuC2I	CCSGG	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	114
BbvI	GCAGC	1 cut(s)	319
BceAI	ACGGC	1 cut(s)	301
BciT130I	CCWGG	2 cut(s)	159, 190
BcnI	CCSGG	1 cut(s)	40
BfaI	CTAG	1 cut(s)	291
BisI	GCNGC	1 cut(s)	333
BlsI	GCNGC	1 cut(s)	334
Bme1390I	CCNGG	3 cut(s)	40, 159, 190
BmrFI	CCNGG	3 cut(s)	40, 159, 190
BmsI	GCATC	2 cut(s)	38, 262
Bpu10I	CCTNAGC	1 cut(s)	25
BpuEI	CTTGAG	1 cut(s)	217
BpuMI	CCSGG	1 cut(s)	40
BsaJI	CCNNGG	3 cut(s)	138, 158, 188
BsaXI	ACNNNNNCTCC	2 cut(s)	169, 199
BseBI	CCWGG	2 cut(s)	159, 190
BseDI	CCNNGG	3 cut(s)	138, 158, 188
BseGI	GGATG	1 cut(s)	274
BseMII	CTCAG	1 cut(s)	109
BseXI	GCAGC	1 cut(s)	319
BshFI	GGCC	2 cut(s)	241, 313
BsiSI	CCGG	2 cut(s)	40, 242
BsnI	GGCC	2 cut(s)	241, 313
BspACI	CCGC	2 cut(s)	117, 182
BspANI	GGCC	2 cut(s)	241, 313
BspCNI	CTCAG	1 cut(s)	108
BssECI	CCNNGG	3 cut(s)	138, 158, 188
BssT1I	CCWWGG	1 cut(s)	138
Bst2UI	CCWGG	2 cut(s)	159, 190
Bst6I	CTCTTC	1 cut(s)	145
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstDEI	CTNAG	3 cut(s)	25, 95, 217
BstF5I	GGATG	1 cut(s)	274
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstNI	CCWGG	2 cut(s)	159, 190
BstSCI	CCNGG	3 cut(s)	38, 157, 188
BstV1I	GCAGC	1 cut(s)	319
BsuRI	GGCC	2 cut(s)	241, 313
BtsCI	GGATG	1 cut(s)	274
Csp6I	GTAC	1 cut(s)	155
CviAII	CATG	2 cut(s)	33, 309
CviQI	GTAC	1 cut(s)	155
DdeI	CTNAG	3 cut(s)	25, 95, 217
Eam1104I	CTCTTC	1 cut(s)	145
EarI	CTCTTC	1 cut(s)	145
EciI	GGCGGA	1 cut(s)	171
Eco130I	CCWWGG	1 cut(s)	138
Eco32I	GATATC	1 cut(s)	247
EcoRII	CCWGG	2 cut(s)	157, 188
EcoRV	GATATC	1 cut(s)	247
EcoT14I	CCWWGG	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	2 cut(s)	36, 312
FaiI	YATR	4 cut(s)	34, 65, 297, 310
FatI	CATG	2 cut(s)	32, 308
Fnu4HI	GCNGC	1 cut(s)	333
FokI	GGATG	1 cut(s)	281
Fsp4HI	GCNGC	1 cut(s)	333
FspBI	CTAG	1 cut(s)	291
GluI	GCNGC	1 cut(s)	333
HaeIII	GGCC	2 cut(s)	241, 313
HapII	CCGG	2 cut(s)	40, 242
Hin1II	CATG	2 cut(s)	36, 312
HindIII	AAGCTT	1 cut(s)	205
HinfI	GANTC	2 cut(s)	71, 143
HpaII	CCGG	2 cut(s)	40, 242
HphI	GGTGA	1 cut(s)	114
Hpy188I	TCNGA	3 cut(s)	98, 112, 169
Hpy188III	TCNNGA	3 cut(s)	147, 234, 257
HpyAV	CCTTC	2 cut(s)	231, 327
HpyCH4V	TGCA	2 cut(s)	36, 80
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
HpyF3I	CTNAG	3 cut(s)	25, 95, 217
Hsp92II	CATG	2 cut(s)	36, 312
Lsp1109I	GCAGC	1 cut(s)	319
LweI	GCATC	2 cut(s)	38, 262
MaeI	CTAG	1 cut(s)	291
MaeIII	GTNAC	1 cut(s)	175
MboII	GAAGA	1 cut(s)	162
MluCI	AATT	1 cut(s)	12
MnlI	CCTC	4 cut(s)	60, 195, 259, 324
MseI	TTAA	2 cut(s)	324, 340
MspI	CCGG	2 cut(s)	40, 242
MspR9I	CCNGG	3 cut(s)	40, 159, 190
MvaI	CCWGG	2 cut(s)	159, 190
MwoI	GCNNNNNNNGC	1 cut(s)	59
NciI	CCSGG	1 cut(s)	40
NlaIII	CATG	2 cut(s)	36, 312
PfeI	GAWTC	2 cut(s)	71, 143
PkrI	GCNGC	1 cut(s)	334
Psp6I	CCWGG	2 cut(s)	157, 188
PspGI	CCWGG	2 cut(s)	157, 188
RsaI	GTAC	1 cut(s)	156
RsaNI	GTAC	1 cut(s)	155
SaqAI	TTAA	2 cut(s)	324, 340
SatI	GCNGC	1 cut(s)	333
ScrFI	CCNGG	3 cut(s)	40, 159, 190
SetI	ASST	6 cut(s)	106, 127, 209, 223, 233, 282
SfaNI	GCATC	2 cut(s)	38, 262
SmlI	CTYRAG	1 cut(s)	232
SmoI	CTYRAG	1 cut(s)	232
Sse9I	AATT	1 cut(s)	12
SsiI	CCGC	2 cut(s)	117, 182
SspMI	CTAG	1 cut(s)	291
StyD4I	CCNGG	3 cut(s)	38, 157, 188
StyI	CCWWGG	1 cut(s)	138
TaqI	TCGA	1 cut(s)	320
TasI	AATT	1 cut(s)	12
TfiI	GAWTC	2 cut(s)	71, 143
Tru1I	TTAA	2 cut(s)	324, 340
Tru9I	TTAA	2 cut(s)	324, 340
TseI	GCWGC	1 cut(s)	332
TspDTI	ATGAA	1 cut(s)	285
XspI	CTAG	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.