FvH4_7g03110

Protein LATERAL ROOT PRIMORDIUM

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0002187
Physical Location & Seq
Forward (+)
3477157 .. 3480327
3171 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g03110.t8

Sequence Viewer

Length: 834 bp
ATGTTGGGTCTGAGAGATATACTCCTGATTGCTCCAAACGCTTCTTCTATGCACCAACAAACCCAACCCATTTCCTCTGACCACCTTCCTTCCTCCACAGCTCTTGGGGTTGGCCTCGGCATCTTCCCTCTCCTCACTGCCACCCCATGCGGGCCAAGCGCTCCCACCGCAGAGGGCAATCCCGACAATTCACGTTTCTGGAGCCTGAGGACGTACCCGGAGCTGAACTCTTCCAAGCAAGACATGCTCAGTTTTGGGAACCACGCCGAAAGTCAACAGGTGGTGAAGTCCGATGACAGAAATTTGAACGGAGACGGCGGTGGCGGTGGCGAAGAGAGTGGCTTGAGGGCTTGCAAGGACTGTGGGAACAGAGCAAAGAAAGGTTGTGAGTACACGAGGTGCAGGACTTGTTGCAGAGGCAGGGGATATGACTGCTCCACTCACGTGAGGAGCACGTGGGTTCCGGCAGCTAGGCGGCGGGAAAGGCAGATGGGGGTGACTGTTGCCGTTACCGGTGATGTTGCCAGTGGTGGTGGCGGTGAAGACGCAAATCTCAGACAGTCATTACCAGATCAAGTTCGGGCACCAGCTGTTTTTAAGTGCCATAGAGTCACTGCCATTAGCAATGGTGAAGCTGAGATTGCTTACCAGGCTACTGTGAAAATCAGTGGTCATGTGTTCAAGGGGTTGCTCTATGATCGTGGGATTGATAAGAAAAATGAATACCCATGTATTTCACATTTGCATTTGGGAAGCGGTAGTAACCAAAGGAATGGAGACTCTTCATCTCCACCTGCGCCTCCTTCCAATGTCTGTATGGCGTCCACTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF702

Protein Analysis

278

Amino Acids

29.43

Weight (kDa)

8.49

Isoelectric Point (pI)

49.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF702 PF05142 116 - 258 2e-56 Domain of unknown function (DUF702)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 802
Acc36I ACCTGC 1 cut(s) 802
AccB1I GGYRCC 1 cut(s) 583
AciI CCGC 8 cut(s) 150, 168, 318, 324, 475, 478, 537, 756
AcsI RAATTY 1 cut(s) 301
AcvI CACGTG 2 cut(s) 445, 456
AcyI GRCGYC 1 cut(s) 821
AdeI CACNNNGTG 1 cut(s) 399
AfaI GTAC 2 cut(s) 215, 392
AfeI AGCGCT 1 cut(s) 160
AfiI CCNNNNNNNGG 1 cut(s) 150
AgeI ACCGGT 1 cut(s) 512
AgsI TTSAA 2 cut(s) 307, 682
AjnI CCWGG 1 cut(s) 648
AjuI GAANNNNNNNTTGG 2 cut(s) 28, 60
AleI CACNNNNGTG 1 cut(s) 443
AluBI AGCT 6 cut(s) 101, 223, 470, 590, 635, 831
AluI AGCT 6 cut(s) 101, 223, 470, 590, 635, 831
Alw21I GWGCWC 1 cut(s) 455
Alw26I GTCTC 2 cut(s) 306, 771
Aor51HI AGCGCT 1 cut(s) 160
AoxI GGCC 2 cut(s) 112, 152
ApeKI GCWGC 1 cut(s) 467
ApoI RAATTY 1 cut(s) 301
AsiGI ACCGGT 1 cut(s) 512
AspLEI GCGC 2 cut(s) 161, 799
AspS9I GGNCC 1 cut(s) 152
AsuC2I CCSGG 1 cut(s) 218
AsuHPI GGTGA 5 cut(s) 295, 508, 527, 551, 641
AxyI CCTNAGG 1 cut(s) 206
BaeGI GKGCMC 1 cut(s) 586
BanI GGYRCC 1 cut(s) 583
BauI CACGAG 1 cut(s) 394
BbrPI CACGTG 2 cut(s) 445, 456
BbsI GAAGAC 1 cut(s) 549
Bbv12I GWGCWC 1 cut(s) 455
BbvI GCAGC 1 cut(s) 479
BccI CCATC 1 cut(s) 484
BceAI ACGGC 2 cut(s) 331, 491
BciT130I CCWGG 1 cut(s) 650
BcnI CCSGG 1 cut(s) 218
BcoDI GTCTC 2 cut(s) 306, 771
BfaI CTAG 2 cut(s) 471, 828
BfoI RGCGCY 1 cut(s) 162
BfuAI ACCTGC 1 cut(s) 802
BisI GCNGC 2 cut(s) 468, 476
BlsI GCNGC 2 cut(s) 469, 477
Bme1390I CCNGG 2 cut(s) 218, 650
BmgT120I GGNCC 1 cut(s) 152
BmiI GGNNCC 4 cut(s) 203, 260, 462, 585
BmrFI CCNGG 2 cut(s) 218, 650
BmsI GCATC 1 cut(s) 129
BpiI GAAGAC 1 cut(s) 549
BplI GAGNNNNNCTC 3 cut(s) 38, 212, 244
BpmI CTGGAG 1 cut(s) 220
BpuEI CTTGAG 1 cut(s) 364
BpuMI CCSGG 1 cut(s) 218
BsaAI YACGTR 2 cut(s) 445, 456
BsaHI GRCGYC 1 cut(s) 821
BsaJI CCNNGG 1 cut(s) 115
BsaWI WCCGGW 1 cut(s) 512
Bsc4I CCNNNNNNNGG 1 cut(s) 150
Bse118I RCCGGY 1 cut(s) 512
Bse1I ACTGG 1 cut(s) 525
Bse21I CCTNAGG 1 cut(s) 206
Bse3DI GCAATG 1 cut(s) 631
BseBI CCWGG 1 cut(s) 650
BseDI CCNNGG 1 cut(s) 115
BseLI CCNNNNNNNGG 1 cut(s) 150
BseMI GCAATG 1 cut(s) 631
BseMII CTCAG 4 cut(s) 197, 262, 568, 627
BseNI ACTGG 1 cut(s) 525
BseRI GAGGAG 2 cut(s) 122, 463
BseSI GKGCMC 1 cut(s) 586
BseXI GCAGC 1 cut(s) 479
BsgI GTGCAG 1 cut(s) 421
BshFI GGCC 2 cut(s) 114, 154
BshNI GGYRCC 1 cut(s) 583
BshTI ACCGGT 1 cut(s) 512
BsiHKAI GWGCWC 1 cut(s) 455
BsiSI CCGG 3 cut(s) 218, 464, 513
BslI CCNNNNNNNGG 1 cut(s) 150
BsmAI GTCTC 2 cut(s) 306, 771
BsmBI CGTCTC 1 cut(s) 306
BsnI GGCC 2 cut(s) 114, 154
Bsp1286I GDGCHC 2 cut(s) 455, 586
Bsp143I GATC 2 cut(s) 571, 697
BspACI CCGC 8 cut(s) 150, 168, 318, 324, 475, 478, 537, 756
BspANI GGCC 2 cut(s) 114, 154
BspCNI CTCAG 4 cut(s) 198, 261, 567, 628
BspLI GGNNCC 4 cut(s) 203, 260, 462, 585
BspMI ACCTGC 1 cut(s) 802
BspT107I GGYRCC 1 cut(s) 583
BsrDI GCAATG 1 cut(s) 631
BsrFI RCCGGY 1 cut(s) 512
BsrI ACTGG 1 cut(s) 525
BssAI RCCGGY 1 cut(s) 512
BssECI CCNNGG 1 cut(s) 115
BssMI GATC 2 cut(s) 571, 697
BssNI GRCGYC 1 cut(s) 821
BssSI CACGAG 1 cut(s) 394
Bst2BI CACGAG 1 cut(s) 394
Bst2UI CCWGG 1 cut(s) 650
Bst4CI ACNGT 4 cut(s) 362, 502, 561, 658
Bst6I CTCTTC 3 cut(s) 235, 327, 787
BstACI GRCGYC 1 cut(s) 821
BstAPI GCANNNNNTGC 1 cut(s) 244
BstBAI YACGTR 2 cut(s) 445, 456
BstC8I GCNNGC 2 cut(s) 152, 352
BstDEI CTNAG 5 cut(s) 11, 206, 248, 554, 636
BstH2I RGCGCY 1 cut(s) 162
BstHHI GCGC 2 cut(s) 161, 799
BstKTI GATC 2 cut(s) 574, 700
BstMAI GTCTC 2 cut(s) 306, 771
BstMBI GATC 2 cut(s) 571, 697
BstMWI GCNNNNNNNGC 7 cut(s) 38, 156, 167, 244, 484, 641, 650
BstNI CCWGG 1 cut(s) 650
BstNSI RCATGY 1 cut(s) 247
BstSCI CCNGG 2 cut(s) 216, 648
BstSLI GKGCMC 1 cut(s) 586
BstV1I GCAGC 1 cut(s) 479
BstV2I GAAGAC 1 cut(s) 549
BstXI CCANNNNNNTGG 1 cut(s) 773
Bsu36I CCTNAGG 1 cut(s) 206
BsuRI GGCC 2 cut(s) 114, 154
BtsI GCAGTG 2 cut(s) 135, 612
BtsIMutI CAGTG 4 cut(s) 135, 532, 612, 673
BveI ACCTGC 1 cut(s) 802
Cac8I GCNNGC 2 cut(s) 152, 352
CfoI GCGC 2 cut(s) 161, 799
Cfr10I RCCGGY 1 cut(s) 512
Cfr13I GGNCC 1 cut(s) 152
CseI GACGC 2 cut(s) 554, 810
Csp6I GTAC 2 cut(s) 214, 391
CspAI ACCGGT 1 cut(s) 512
CspCI CAANNNNNGTGG 4 cut(s) 85, 120, 343, 378
CviAII CATG 4 cut(s) 147, 244, 674, 729
CviQI GTAC 2 cut(s) 214, 391
DdeI CTNAG 5 cut(s) 11, 206, 248, 554, 636
DpnI GATC 2 cut(s) 573, 699
DpnII GATC 2 cut(s) 571, 697
DraIII CACNNNGTG 1 cut(s) 399
Eam1104I CTCTTC 3 cut(s) 235, 327, 787
EarI CTCTTC 3 cut(s) 235, 327, 787
Eco47III AGCGCT 1 cut(s) 160
Eco72I CACGTG 2 cut(s) 445, 456
Eco81I CCTNAGG 1 cut(s) 206
EcoRII CCWGG 1 cut(s) 648
Esp3I CGTCTC 1 cut(s) 306
FaeI CATG 4 cut(s) 150, 247, 677, 732
FatI CATG 4 cut(s) 146, 243, 673, 728
FauI CCCGC 2 cut(s) 143, 471
Fnu4HI GCNGC 2 cut(s) 468, 476
Fsp4HI GCNGC 2 cut(s) 468, 476
FspBI CTAG 2 cut(s) 471, 828
GlaI GCGC 2 cut(s) 160, 798
GluI GCNGC 2 cut(s) 468, 476
GsuI CTGGAG 1 cut(s) 220
HaeII RGCGCY 1 cut(s) 162
HaeIII GGCC 2 cut(s) 114, 154
HapII CCGG 3 cut(s) 218, 464, 513
HgaI GACGC 2 cut(s) 554, 810
HhaI GCGC 2 cut(s) 161, 799
Hin1I GRCGYC 1 cut(s) 821
Hin1II CATG 4 cut(s) 150, 247, 677, 732
Hin6I GCGC 2 cut(s) 159, 797
HinP1I GCGC 2 cut(s) 159, 797
HincII GTYRAC 1 cut(s) 275
HindII GTYRAC 1 cut(s) 275
HinfI GANTC 2 cut(s) 609, 779
HpaII CCGG 3 cut(s) 218, 464, 513
HphI GGTGA 5 cut(s) 295, 508, 527, 551, 641
Hpy166II GTNNAC 3 cut(s) 275, 393, 825
Hpy188I TCNGA 4 cut(s) 12, 79, 292, 557
Hpy188III TCNNGA 3 cut(s) 25, 182, 199
Hpy8I GTNNAC 3 cut(s) 275, 393, 825
HpyAV CCTTC 3 cut(s) 95, 99, 813
HpyCH4III ACNGT 4 cut(s) 362, 502, 561, 658
HpyCH4IV ACGT 4 cut(s) 193, 212, 444, 455
HpyCH4V TGCA 5 cut(s) 52, 354, 402, 414, 745
HpyF10VI GCNNNNNNNGC 7 cut(s) 38, 156, 167, 244, 484, 641, 650
HpyF3I CTNAG 5 cut(s) 11, 206, 248, 554, 636
HpySE526I ACGT 4 cut(s) 193, 212, 444, 455
Hsp92I GRCGYC 1 cut(s) 821
Hsp92II CATG 4 cut(s) 150, 247, 677, 732
HspAI GCGC 2 cut(s) 159, 797
Kzo9I GATC 2 cut(s) 571, 697
LmnI GCTCC 6 cut(s) 37, 166, 201, 220, 440, 450
Lsp1109I GCAGC 1 cut(s) 479
LweI GCATC 1 cut(s) 129
MaeI CTAG 2 cut(s) 471, 828
MaeII ACGT 4 cut(s) 193, 212, 444, 455
MaeIII GTNAC 4 cut(s) 496, 508, 610, 761
MalI GATC 2 cut(s) 573, 699
MboI GATC 2 cut(s) 571, 697
MboII GAAGA 6 cut(s) 36, 115, 222, 344, 554, 774
MhlI GDGCHC 2 cut(s) 455, 586
MluCI AATT 2 cut(s) 187, 301
MlyI GAGTC 2 cut(s) 618, 773
MseI TTAA 1 cut(s) 597
MslI CAYNNNNRTG 1 cut(s) 443
MspA1I CMGCKG 1 cut(s) 590
MspI CCGG 3 cut(s) 218, 464, 513
MspR9I CCNGG 2 cut(s) 218, 650
MvaI CCWGG 1 cut(s) 650
MwoI GCNNNNNNNGC 7 cut(s) 38, 156, 167, 244, 484, 641, 650
NciI CCSGG 1 cut(s) 218
NdeII GATC 2 cut(s) 571, 697
NlaIII CATG 4 cut(s) 150, 247, 677, 732
NlaIV GGNNCC 4 cut(s) 203, 260, 462, 585
NmeAIII GCCGAG 1 cut(s) 96
NmuCI GTSAC 2 cut(s) 496, 610
NspI RCATGY 1 cut(s) 247
OliI CACNNNNGTG 1 cut(s) 443
PaqCI CACCTGC 1 cut(s) 802
PinAI ACCGGT 1 cut(s) 512
PkrI GCNGC 2 cut(s) 469, 477
PleI GAGTC 2 cut(s) 617, 773
PmaCI CACGTG 2 cut(s) 445, 456
PmlI CACGTG 2 cut(s) 445, 456
PpsI GAGTC 2 cut(s) 617, 773
Ppu21I YACGTR 2 cut(s) 445, 456
Psp6I CCWGG 1 cut(s) 648
PspCI CACGTG 2 cut(s) 445, 456
PspGI CCWGG 1 cut(s) 648
PspN4I GGNNCC 4 cut(s) 203, 260, 462, 585
PspPI GGNCC 1 cut(s) 152
PvuII CAGCTG 1 cut(s) 590
RsaI GTAC 2 cut(s) 215, 392
RsaNI GTAC 2 cut(s) 214, 391
RseI CAYNNNNRTG 1 cut(s) 443
SaqAI TTAA 1 cut(s) 597
SatI GCNGC 2 cut(s) 468, 476
Sau3AI GATC 2 cut(s) 571, 697
Sau96I GGNCC 1 cut(s) 152
SchI GAGTC 2 cut(s) 618, 773
ScrFI CCNGG 2 cut(s) 218, 650
SduI GDGCHC 2 cut(s) 455, 586
SfaNI GCATC 1 cut(s) 129
SmiMI CAYNNNNRTG 1 cut(s) 443
SmlI CTYRAG 1 cut(s) 343
SmoI CTYRAG 1 cut(s) 343
Sse9I AATT 2 cut(s) 187, 301
SsiI CCGC 8 cut(s) 150, 168, 318, 324, 475, 478, 537, 756
SspMI CTAG 2 cut(s) 471, 828
StyD4I CCNGG 2 cut(s) 216, 648
TaaI ACNGT 4 cut(s) 362, 502, 561, 658
TaiI ACGT 4 cut(s) 196, 215, 447, 458
TasI AATT 2 cut(s) 187, 301
TatI WGTACW 1 cut(s) 390
TauI GCSGC 1 cut(s) 478
Tru1I TTAA 1 cut(s) 597
Tru9I TTAA 1 cut(s) 597
TscAI CASTG 4 cut(s) 142, 532, 619, 673
TseFI GTSAC 2 cut(s) 496, 610
TseI GCWGC 1 cut(s) 467
Tsp45I GTSAC 2 cut(s) 496, 610
TspDTI ATGAA 2 cut(s) 735, 774
TspGWI ACGGA 1 cut(s) 324
TspRI CASTG 4 cut(s) 142, 532, 619, 673
XapI RAATTY 1 cut(s) 301
XceI RCATGY 1 cut(s) 247
XcmI CCANNNNNNNNNTGG 1 cut(s) 814
XspI CTAG 2 cut(s) 471, 828
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.