Rorug01G0045200

Protein LATERAL ROOT PRIMORDIUM

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0002187
Physical Location & Seq
Forward (+)
7672266 .. 7673042
777 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0045200.1

Sequence Viewer

Length: 750 bp
ATGCCTATATCTTCCTCCACAATCTCCAATCCCAAAACCATTTCATCAACTCCAATATTACTTGTCACCACCATTCTTCAATTCTCGCATTCTCTCAATCCTTCACCAATGGAACCACAAACCCAGCAACCAACCGAGGATGGAGGAAGTAACAAAGCAGCCGAGAGTAGTGCTAACATGCTTTGTAGGCGGAACAGGTGGAATCCCACTACAGATCAGATAAGAATCCTTAAGGAGCTTTTCTACAATAAGGGAGTTAGGTCCCCAACTATAGAGCAGATTCAGAGGATCTGTCTCCAGCTGCAATGGTACGGCCAGATCGAGTTCAAGAACGTCTATTTTTGGTTCGTGAACCAAAGGGCTCGGGAGAAGCGGAAGAAGAGGTCCACTTCGGACGTTCATGTGCCCATGCAAAGACCAGGGCTTGTTGGTGATGACAATGGTACCAATTGGAAACCTGAGGATCAGTATATTAACTTCGAATCTTCTGCATCTGCTTCTGCTTCTTCAGCTGGTGTGATTGCTTTTAACGGGCAGAAGGGGAACTATGGTGGTTATGGATCTATGAACATGGAGATTGAAACCCTTCCTCTGTTCCCAATGCATGGTGAAGACATCTTTGGTAACATGAAGACTACTTCCGATGGAGGTGGCGGTCACGGTGGTGGCTCTCACATTTCCCTTGAGCTCAGCCTTTCCTGCGAGGGCAAAGCTGAAAAAAAAATTTCCGGAGCCGCTGACTCGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF702

Protein Analysis

249

Amino Acids

27.32

Weight (kDa)

7.72

Isoelectric Point (pI)

57.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 63 - 125 4.3e-10 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 443
AccB1I GGYRCC 1 cut(s) 443
AccB7I CCANNNNNTGG 1 cut(s) 605
AccIII TCCGGA 1 cut(s) 728
AciI CCGC 4 cut(s) 190, 373, 654, 735
AclWI GGATC 3 cut(s) 296, 471, 568
AcoI YGGCCR 1 cut(s) 313
AcsI RAATTY 1 cut(s) 723
AcuI CTGAAG 1 cut(s) 492
AfaI GTAC 2 cut(s) 311, 445
AfiI CCNNNNNNNGG 1 cut(s) 605
AflII CTTAAG 1 cut(s) 230
AgsI TTSAA 3 cut(s) 80, 328, 581
AjnI CCWGG 1 cut(s) 418
AjuI GAANNNNNNNTTGG 2 cut(s) 603, 635
AleI CACNNNNGTG 1 cut(s) 663
AluBI AGCT 5 cut(s) 238, 301, 512, 688, 713
AluI AGCT 5 cut(s) 238, 301, 512, 688, 713
Alw21I GWGCWC 1 cut(s) 690
Alw26I GTCTC 1 cut(s) 299
AlwI GGATC 3 cut(s) 296, 471, 568
Ama87I CYCGRG 1 cut(s) 363
Aor13HI TCCGGA 1 cut(s) 728
AoxI GGCC 1 cut(s) 313
ApeKI GCWGC 2 cut(s) 158, 301
ApoI RAATTY 1 cut(s) 723
Asp700I GAANNNNTTC 1 cut(s) 585
Asp718I GGTACC 1 cut(s) 443
AspS9I GGNCC 2 cut(s) 261, 384
AsuHPI GGTGA 4 cut(s) 58, 96, 443, 620
AsuII TTCGAA 1 cut(s) 480
AvaI CYCGRG 1 cut(s) 363
AvaII GGWCC 2 cut(s) 261, 384
AxyI CCTNAGG 1 cut(s) 459
BaeGI GKGCMC 1 cut(s) 408
BaeI ACNNNNGTAYC 2 cut(s) 427, 460
BanI GGYRCC 1 cut(s) 443
BanII GRGCYC 2 cut(s) 364, 690
BarI GAAGNNNNNNTAC 2 cut(s) 461, 493
BbsI GAAGAC 2 cut(s) 618, 638
Bbv12I GWGCWC 1 cut(s) 690
BbvI GCAGC 2 cut(s) 170, 288
BccI CCATC 2 cut(s) 134, 638
BceAI ACGGC 1 cut(s) 328
BcgI CGANNNNNNTGC 4 cut(s) 152, 186, 470, 504
BciT130I CCWGG 1 cut(s) 420
BcoDI GTCTC 1 cut(s) 299
BfmI CTRYAG 2 cut(s) 210, 270
BfrI CTTAAG 1 cut(s) 230
BisI GCNGC 3 cut(s) 159, 302, 735
BlpI GCTNAGC 1 cut(s) 689
BlsI GCNGC 3 cut(s) 160, 303, 736
Bme1390I CCNGG 1 cut(s) 420
Bme18I GGWCC 2 cut(s) 261, 384
BmeT110I CYCGRG 1 cut(s) 363
BmgT120I GGNCC 2 cut(s) 261, 384
BmiI GGNNCC 4 cut(s) 114, 263, 445, 733
BmrFI CCNGG 1 cut(s) 420
BmsI GCATC 1 cut(s) 500
BpiI GAAGAC 2 cut(s) 618, 638
BpmI CTGGAG 1 cut(s) 281
Bpu1102I GCTNAGC 1 cut(s) 689
Bpu14I TTCGAA 1 cut(s) 480
BpuEI CTTGAG 1 cut(s) 704
BsaBI GATNNNNATC 1 cut(s) 224
BsaJI CCNNGG 2 cut(s) 135, 419
BsaWI WCCGGW 1 cut(s) 728
Bsc4I CCNNNNNNNGG 1 cut(s) 605
Bse21I CCTNAGG 1 cut(s) 459
Bse3DI GCAATG 1 cut(s) 311
Bse8I GATNNNNATC 1 cut(s) 224
BseAI TCCGGA 1 cut(s) 728
BseBI CCWGG 1 cut(s) 420
BseDI CCNNGG 2 cut(s) 135, 419
BseGI GGATG 1 cut(s) 145
BseJI GATNNNNATC 1 cut(s) 224
BseLI CCNNNNNNNGG 1 cut(s) 605
BseMI GCAATG 1 cut(s) 311
BseMII CTCAG 2 cut(s) 450, 703
BseSI GKGCMC 1 cut(s) 408
BseXI GCAGC 2 cut(s) 170, 288
BseYI CCCAGC 1 cut(s) 123
BshFI GGCC 1 cut(s) 315
BshNI GGYRCC 1 cut(s) 443
BsiHKAI GWGCWC 1 cut(s) 690
BsiHKCI CYCGRG 1 cut(s) 363
BsiSI CCGG 1 cut(s) 729
BslFI GGGAC 1 cut(s) 247
BslI CCNNNNNNNGG 1 cut(s) 605
BsmAI GTCTC 1 cut(s) 299
BsmFI GGGAC 1 cut(s) 247
BsmI GAATGC 1 cut(s) 88
BsnI GGCC 1 cut(s) 315
BsoBI CYCGRG 1 cut(s) 363
Bsp119I TTCGAA 1 cut(s) 480
Bsp1286I GDGCHC 3 cut(s) 364, 408, 690
Bsp13I TCCGGA 1 cut(s) 728
Bsp143I GATC 5 cut(s) 214, 288, 318, 463, 560
Bsp1720I GCTNAGC 1 cut(s) 689
BspACI CCGC 4 cut(s) 190, 373, 654, 735
BspANI GGCC 1 cut(s) 315
BspCNI CTCAG 2 cut(s) 451, 702
BspEI TCCGGA 1 cut(s) 728
BspLI GGNNCC 4 cut(s) 114, 263, 445, 733
BspPI GGATC 3 cut(s) 296, 471, 568
BspT104I TTCGAA 1 cut(s) 480
BspT107I GGYRCC 1 cut(s) 443
BspTI CTTAAG 1 cut(s) 230
BsrDI GCAATG 1 cut(s) 311
BssECI CCNNGG 2 cut(s) 135, 419
BssMI GATC 5 cut(s) 214, 288, 318, 463, 560
Bst2UI CCWGG 1 cut(s) 420
Bst4CI ACNGT 1 cut(s) 662
Bst6I CTCTTC 1 cut(s) 374
BstAFI CTTAAG 1 cut(s) 230
BstBI TTCGAA 1 cut(s) 480
BstDEI CTNAG 3 cut(s) 459, 689, 747
BstF5I GGATG 1 cut(s) 145
BstKTI GATC 5 cut(s) 217, 291, 321, 466, 563
BstMAI GTCTC 1 cut(s) 299
BstMBI GATC 5 cut(s) 214, 288, 318, 463, 560
BstMWI GCNNNNNNNGC 4 cut(s) 187, 509, 699, 743
BstNI CCWGG 1 cut(s) 420
BstNSI RCATGY 1 cut(s) 181
BstSCI CCNGG 1 cut(s) 418
BstSFI CTRYAG 2 cut(s) 210, 270
BstSLI GKGCMC 1 cut(s) 408
BstV1I GCAGC 2 cut(s) 170, 288
BstV2I GAAGAC 2 cut(s) 618, 638
BstX2I RGATCY 2 cut(s) 288, 560
BstYI RGATCY 2 cut(s) 288, 560
Bsu36I CCTNAGG 1 cut(s) 459
BsuRI GGCC 1 cut(s) 315
BtsCI GGATG 1 cut(s) 145
Cfr13I GGNCC 2 cut(s) 261, 384
Csp6I GTAC 2 cut(s) 310, 444
CviAII CATG 6 cut(s) 178, 401, 409, 571, 605, 628
CviQI GTAC 2 cut(s) 310, 444
DdeI CTNAG 3 cut(s) 459, 689, 747
DpnI GATC 5 cut(s) 216, 290, 320, 465, 562
DpnII GATC 5 cut(s) 214, 288, 318, 463, 560
EaeI YGGCCR 1 cut(s) 313
Eam1104I CTCTTC 1 cut(s) 374
EarI CTCTTC 1 cut(s) 374
EciI GGCGGA 1 cut(s) 205
Ecl136II GAGCTC 1 cut(s) 688
Eco24I GRGCYC 2 cut(s) 364, 690
Eco47I GGWCC 2 cut(s) 261, 384
Eco53kI GAGCTC 1 cut(s) 688
Eco57I CTGAAG 1 cut(s) 492
Eco81I CCTNAGG 1 cut(s) 459
Eco88I CYCGRG 1 cut(s) 363
EcoICRI GAGCTC 1 cut(s) 688
EcoO109I RGGNCCY 1 cut(s) 261
EcoRII CCWGG 1 cut(s) 418
EcoT22I ATGCAT 1 cut(s) 606
EcoT38I GRGCYC 2 cut(s) 364, 690
FaeI CATG 6 cut(s) 181, 404, 412, 574, 608, 631
FaqI GGGAC 1 cut(s) 247
FatI CATG 6 cut(s) 177, 400, 408, 570, 604, 627
Fnu4HI GCNGC 3 cut(s) 159, 302, 735
FokI GGATG 1 cut(s) 152
FriOI GRGCYC 2 cut(s) 364, 690
Fsp4HI GCNGC 3 cut(s) 159, 302, 735
GluI GCNGC 3 cut(s) 159, 302, 735
GsaI CCCAGC 1 cut(s) 127
GsuI CTGGAG 1 cut(s) 281
HaeIII GGCC 1 cut(s) 315
HapII CCGG 1 cut(s) 729
Hin1II CATG 6 cut(s) 181, 404, 412, 574, 608, 631
HinfI GANTC 5 cut(s) 202, 225, 280, 482, 740
HpaII CCGG 1 cut(s) 729
HphI GGTGA 4 cut(s) 58, 96, 443, 620
Hpy166II GTNNAC 2 cut(s) 352, 387
Hpy188I TCNGA 4 cut(s) 219, 285, 394, 643
Hpy188III TCNNGA 4 cut(s) 328, 349, 365, 729
Hpy8I GTNNAC 2 cut(s) 352, 387
HpyAV CCTTC 3 cut(s) 111, 532, 596
HpyCH4III ACNGT 1 cut(s) 662
HpyCH4IV ACGT 2 cut(s) 333, 396
HpyCH4V TGCA 4 cut(s) 304, 412, 491, 604
HpyF10VI GCNNNNNNNGC 4 cut(s) 187, 509, 699, 743
HpyF3I CTNAG 3 cut(s) 459, 689, 747
HpySE526I ACGT 2 cut(s) 333, 396
Hsp92II CATG 6 cut(s) 181, 404, 412, 574, 608, 631
Kpn2I TCCGGA 1 cut(s) 728
KpnI GGTACC 1 cut(s) 447
Kzo9I GATC 5 cut(s) 214, 288, 318, 463, 560
LmnI GCTCC 2 cut(s) 235, 731
Lsp1109I GCAGC 2 cut(s) 170, 288
LweI GCATC 1 cut(s) 500
MaeII ACGT 2 cut(s) 333, 396
MaeIII GTNAC 4 cut(s) 64, 149, 623, 656
MalI GATC 5 cut(s) 216, 290, 320, 465, 562
MboI GATC 5 cut(s) 214, 288, 318, 463, 560
MboII GAAGA 8 cut(s) 3, 68, 388, 391, 477, 498, 623, 643
MfeI CAATTG 1 cut(s) 448
MflI RGATCY 2 cut(s) 288, 560
MhlI GDGCHC 3 cut(s) 364, 408, 690
MluCI AATT 3 cut(s) 80, 448, 723
MlyI GAGTC 1 cut(s) 734
MnlI CCTC 9 cut(s) 25, 130, 137, 279, 375, 454, 600, 641, 697
Mph1103I ATGCAT 1 cut(s) 606
MroI TCCGGA 1 cut(s) 728
MroXI GAANNNNTTC 1 cut(s) 585
MseI TTAA 3 cut(s) 231, 474, 528
MslI CAYNNNNRTG 1 cut(s) 663
MspA1I CMGCKG 3 cut(s) 301, 512, 737
MspCI CTTAAG 1 cut(s) 230
MspI CCGG 1 cut(s) 729
MspR9I CCNGG 1 cut(s) 420
MunI CAATTG 1 cut(s) 448
Mva1269I GAATGC 1 cut(s) 88
MvaI CCWGG 1 cut(s) 420
MwoI GCNNNNNNNGC 4 cut(s) 187, 509, 699, 743
NdeII GATC 5 cut(s) 214, 288, 318, 463, 560
NlaIII CATG 6 cut(s) 181, 404, 412, 574, 608, 631
NlaIV GGNNCC 4 cut(s) 114, 263, 445, 733
NmeAIII GCCGAG 2 cut(s) 187, 722
NmuCI GTSAC 2 cut(s) 64, 656
NsiI ATGCAT 1 cut(s) 606
NspI RCATGY 1 cut(s) 181
NspV TTCGAA 1 cut(s) 480
OliI CACNNNNGTG 1 cut(s) 663
PcsI WCGNNNNNNNCGW 1 cut(s) 318
PctI GAATGC 1 cut(s) 88
PdmI GAANNNNTTC 1 cut(s) 585
PfeI GAWTC 4 cut(s) 202, 225, 280, 482
PflMI CCANNNNNTGG 1 cut(s) 605
PkrI GCNGC 3 cut(s) 160, 303, 736
PleI GAGTC 1 cut(s) 734
PpsI GAGTC 1 cut(s) 734
PpuMI RGGWCCY 1 cut(s) 261
Psp124BI GAGCTC 1 cut(s) 690
Psp5II RGGWCCY 1 cut(s) 261
Psp6I CCWGG 1 cut(s) 418
PspFI CCCAGC 1 cut(s) 123
PspGI CCWGG 1 cut(s) 418
PspN4I GGNNCC 4 cut(s) 114, 263, 445, 733
PspPI GGNCC 2 cut(s) 261, 384
PspPPI RGGWCCY 1 cut(s) 261
PsuI RGATCY 2 cut(s) 288, 560
PvuII CAGCTG 2 cut(s) 301, 512
RsaI GTAC 2 cut(s) 311, 445
RsaNI GTAC 2 cut(s) 310, 444
RseI CAYNNNNRTG 1 cut(s) 663
SacI GAGCTC 1 cut(s) 690
SaqAI TTAA 3 cut(s) 231, 474, 528
SatI GCNGC 3 cut(s) 159, 302, 735
Sau3AI GATC 5 cut(s) 214, 288, 318, 463, 560
Sau96I GGNCC 2 cut(s) 261, 384
SchI GAGTC 1 cut(s) 734
ScrFI CCNGG 1 cut(s) 420
SduI GDGCHC 3 cut(s) 364, 408, 690
SfaNI GCATC 1 cut(s) 500
SfcI CTRYAG 2 cut(s) 210, 270
SfuI TTCGAA 1 cut(s) 480
SinI GGWCC 2 cut(s) 261, 384
SmiMI CAYNNNNRTG 1 cut(s) 663
SmlI CTYRAG 2 cut(s) 230, 683
SmoI CTYRAG 2 cut(s) 230, 683
Sse9I AATT 3 cut(s) 80, 448, 723
SsiI CCGC 4 cut(s) 190, 373, 654, 735
SspI AATATT 1 cut(s) 57
SstI GAGCTC 1 cut(s) 690
StyD4I CCNGG 1 cut(s) 418
TaaI ACNGT 1 cut(s) 662
TaiI ACGT 2 cut(s) 336, 399
TaqI TCGA 2 cut(s) 321, 480
TasI AATT 3 cut(s) 80, 448, 723
TauI GCSGC 1 cut(s) 737
TfiI GAWTC 4 cut(s) 202, 225, 280, 482
Tru1I TTAA 3 cut(s) 231, 474, 528
Tru9I TTAA 3 cut(s) 231, 474, 528
TseFI GTSAC 2 cut(s) 64, 656
TseI GCWGC 2 cut(s) 158, 301
Tsp45I GTSAC 2 cut(s) 64, 656
TspDTI ATGAA 4 cut(s) 33, 389, 581, 644
Van91I CCANNNNNTGG 1 cut(s) 605
Vha464I CTTAAG 1 cut(s) 230
VpaK11BI GGWCC 2 cut(s) 261, 384
XapI RAATTY 1 cut(s) 723
XceI RCATGY 1 cut(s) 181
XmnI GAANNNNTTC 1 cut(s) 585
Zsp2I ATGCAT 1 cut(s) 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.