Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004082.1

Orthogroup ID

OG0002187

Physical Location & Seq

Genomic Coordinates Reverse (-)

20884 .. 22593

Gene Structure 1710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004082.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

atgggtttggtcgagtgggtgacagatgtcaccattttatggtttcttctaatcacatcatcttcaacccacgttcgtggccatgctggtcatgggattgtgacacttgtccaattagatgcaaatctcagacagtcattaccagatcaagttcgggtaccagctgtttttaagtgccatagagtcactgcaattagcaatggtgaagctgagattgcttaccaggctactgtgaaaatcagtggtcatgtattcaaggggttgctctatgatcgttgggttgataagaagaatgaatacccttgtatttcacatatgcatttgggaagtggtagtaaccaaaggaatggagactcttcttctccaactgtgcctccatccgatgtctgtgtggcgtccaccagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF702

Protein Analysis

135

Amino Acids

14.71

Weight (kDa)

7.05

Isoelectric Point (pI)

34.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54430
fragaria_vesca	FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110
malus_domestica	MD02G1285800.v1.1
prunus_persica	Prupe.2G036500_v2.0.a1 Prupe.2G036500_v2.0.a1 Prupe.2G036500_v2.0.a1 Prupe.2G036500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0319531 RchiOBHm_Chr1g0324311
rosa_laevigata	RLG00000008631 RLG00000017375 RLG00000030203 RLG00000033698
rosa_multiflora	Rmu_sc0004082.1_g000006 Rmu_sc0004082.1_g000019 Rmu_sc0004082.1_g000020
rosa_roxburghii	Rroxscaffold_159G00432690 Rroxscaffold_159G00432760 Rroxscaffold_159G00432820 Rroxscaffold_4G00325640 Rroxscaffold_4G00325700
rosa_rugosa	Rorug01G0045000 Rorug01G0045100 Rorug01G0045200 Rorug01G0045300 Rorug01G0045400 Rorug01G0045500
rosa_samantha	Rh1AG061000 Rh1BG052100 Rh1CG063200 Rh1DG067600 Rh6AG126800 Rh6CG264300 Rh7CG487400
rosa_wichuraiana	Rw1G005190 Rw4G000540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	157
AccB1I	GGYRCC	1 cut(s)	157
AccB7I	CCANNNNNTGG	1 cut(s)	39
AcoI	YGGCCR	1 cut(s)	79
AcyI	GRCGYC	1 cut(s)	395
AfaI	GTAC	1 cut(s)	159
AfiI	CCNNNNNNNGG	1 cut(s)	39
AgsI	TTSAA	2 cut(s)	66, 256
AjnI	CCWGG	1 cut(s)	222
AleI	CACNNNNGTG	1 cut(s)	75
AluBI	AGCT	3 cut(s)	164, 209, 405
AluI	AGCT	3 cut(s)	164, 209, 405
Alw26I	GTCTC	1 cut(s)	345
AoxI	GGCC	1 cut(s)	79
Asp718I	GGTACC	1 cut(s)	157
AsuHPI	GGTGA	3 cut(s)	22, 31, 215
BalI	TGGCCA	1 cut(s)	81
BanI	GGYRCC	1 cut(s)	157
BarI	GAAGNNNNNNTAC	2 cut(s)	281, 313
BccI	CCATC	1 cut(s)	385
BciT130I	CCWGG	1 cut(s)	224
BcoDI	GTCTC	1 cut(s)	345
Bme1390I	CCNGG	1 cut(s)	224
BmiI	GGNNCC	1 cut(s)	159
BmrFI	CCNGG	1 cut(s)	224
BmsI	GCATC	1 cut(s)	109
BoxI	GACNNNNGTC	2 cut(s)	26, 107
BsaBI	GATNNNNATC	1 cut(s)	123
BsaHI	GRCGYC	1 cut(s)	395
BsaXI	ACNNNNNCTCC	2 cut(s)	358, 388
Bsc4I	CCNNNNNNNGG	1 cut(s)	39
Bse3DI	GCAATG	1 cut(s)	205
Bse8I	GATNNNNATC	1 cut(s)	123
BseBI	CCWGG	1 cut(s)	224
BseGI	GGATG	1 cut(s)	377
BseJI	GATNNNNATC	1 cut(s)	123
BseLI	CCNNNNNNNGG	1 cut(s)	39
BseMI	GCAATG	1 cut(s)	205
BseMII	CTCAG	2 cut(s)	142, 201
BshFI	GGCC	1 cut(s)	81
BshNI	GGYRCC	1 cut(s)	157
BslI	CCNNNNNNNGG	1 cut(s)	39
BsmAI	GTCTC	1 cut(s)	345
BsnI	GGCC	1 cut(s)	81
Bsp143I	GATC	2 cut(s)	145, 271
BspANI	GGCC	1 cut(s)	81
BspCNI	CTCAG	2 cut(s)	141, 202
BspLI	GGNNCC	1 cut(s)	159
BspT107I	GGYRCC	1 cut(s)	157
BsrDI	GCAATG	1 cut(s)	205
BssMI	GATC	2 cut(s)	145, 271
BssNI	GRCGYC	1 cut(s)	395
Bst2UI	CCWGG	1 cut(s)	224
Bst4CI	ACNGT	3 cut(s)	135, 232, 370
Bst6I	CTCTTC	1 cut(s)	361
BstACI	GRCGYC	1 cut(s)	395
BstDEI	CTNAG	2 cut(s)	128, 210
BstF5I	GGATG	1 cut(s)	377
BstKTI	GATC	2 cut(s)	148, 274
BstMAI	GTCTC	1 cut(s)	345
BstMBI	GATC	2 cut(s)	145, 271
BstMWI	GCNNNNNNNGC	2 cut(s)	215, 224
BstNI	CCWGG	1 cut(s)	224
BstPAI	GACNNNNGTC	2 cut(s)	26, 107
BstSCI	CCNGG	1 cut(s)	222
BstXI	CCANNNNNNTGG	2 cut(s)	77, 347
BsuRI	GGCC	1 cut(s)	81
BtsCI	GGATG	1 cut(s)	377
BtsI	GCAGTG	1 cut(s)	186
BtsIMutI	CAGTG	2 cut(s)	186, 247
CseI	GACGC	1 cut(s)	384
Csp6I	GTAC	1 cut(s)	158
CviAII	CATG	3 cut(s)	83, 92, 248
CviJI	RGCY	5 cut(s)	81, 164, 209, 227, 405
CviKI_1	RGCY	5 cut(s)	81, 164, 209, 227, 405
CviQI	GTAC	1 cut(s)	158
DdeI	CTNAG	2 cut(s)	128, 210
DpnI	GATC	2 cut(s)	147, 273
DpnII	GATC	2 cut(s)	145, 271
EaeI	YGGCCR	1 cut(s)	79
Eam1104I	CTCTTC	1 cut(s)	361
EarI	CTCTTC	1 cut(s)	361
EcoRII	CCWGG	1 cut(s)	222
EcoT22I	ATGCAT	1 cut(s)	321
FaeI	CATG	3 cut(s)	86, 95, 251
FaiI	YATR	8 cut(s)	40, 84, 93, 180, 249, 270, 315, 317
FatI	CATG	3 cut(s)	82, 91, 247
FauNDI	CATATG	1 cut(s)	315
FokI	GGATG	1 cut(s)	364
HaeIII	GGCC	1 cut(s)	81
HgaI	GACGC	1 cut(s)	384
Hin1I	GRCGYC	1 cut(s)	395
Hin1II	CATG	3 cut(s)	86, 95, 251
HinfI	GANTC	2 cut(s)	183, 353
HphI	GGTGA	3 cut(s)	22, 31, 215
Hpy166II	GTNNAC	1 cut(s)	399
Hpy188I	TCNGA	2 cut(s)	131, 382
Hpy8I	GTNNAC	1 cut(s)	399
HpyCH4III	ACNGT	3 cut(s)	135, 232, 370
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	3 cut(s)	122, 191, 319
HpyF10VI	GCNNNNNNNGC	2 cut(s)	215, 224
HpyF3I	CTNAG	2 cut(s)	128, 210
HpySE526I	ACGT	1 cut(s)	72
Hsp92I	GRCGYC	1 cut(s)	395
Hsp92II	CATG	3 cut(s)	86, 95, 251
KpnI	GGTACC	1 cut(s)	161
Kzo9I	GATC	2 cut(s)	145, 271
LpnPI	CCDG	5 cut(s)	72, 156, 174, 209, 236
LweI	GCATC	1 cut(s)	109
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	5 cut(s)	19, 28, 100, 184, 335
MalI	GATC	2 cut(s)	147, 273
MboI	GATC	2 cut(s)	145, 271
MboII	GAAGA	5 cut(s)	38, 54, 301, 348, 351
MlsI	TGGCCA	1 cut(s)	81
MluCI	AATT	2 cut(s)	113, 192
MluNI	TGGCCA	1 cut(s)	81
MlyI	GAGTC	2 cut(s)	192, 347
MmeI	TCCRAC	1 cut(s)	389
MnlI	CCTC	1 cut(s)	384
Mox20I	TGGCCA	1 cut(s)	81
Mph1103I	ATGCAT	1 cut(s)	321
MscI	TGGCCA	1 cut(s)	81
MseI	TTAA	1 cut(s)	171
MslI	CAYNNNNRTG	1 cut(s)	75
Msp20I	TGGCCA	1 cut(s)	81
MspA1I	CMGCKG	2 cut(s)	164, 405
MspR9I	CCNGG	1 cut(s)	224
MvaI	CCWGG	1 cut(s)	224
MwoI	GCNNNNNNNGC	2 cut(s)	215, 224
NdeI	CATATG	1 cut(s)	315
NdeII	GATC	2 cut(s)	145, 271
NlaIII	CATG	3 cut(s)	86, 95, 251
NlaIV	GGNNCC	1 cut(s)	159
NmuCI	GTSAC	4 cut(s)	19, 28, 100, 184
NsiI	ATGCAT	1 cut(s)	321
OliI	CACNNNNGTG	1 cut(s)	75
PflMI	CCANNNNNTGG	1 cut(s)	39
PleI	GAGTC	2 cut(s)	191, 347
PpsI	GAGTC	2 cut(s)	191, 347
PshAI	GACNNNNGTC	2 cut(s)	26, 107
Psp6I	CCWGG	1 cut(s)	222
PspGI	CCWGG	1 cut(s)	222
PspN4I	GGNNCC	1 cut(s)	159
PvuII	CAGCTG	2 cut(s)	164, 405
RsaI	GTAC	1 cut(s)	159
RsaNI	GTAC	1 cut(s)	158
RseI	CAYNNNNRTG	1 cut(s)	75
SaqAI	TTAA	1 cut(s)	171
Sau3AI	GATC	2 cut(s)	145, 271
SchI	GAGTC	2 cut(s)	192, 347
ScrFI	CCNGG	1 cut(s)	224
SetI	ASST	4 cut(s)	75, 166, 211, 407
SfaNI	GCATC	1 cut(s)	109
SmiMI	CAYNNNNRTG	1 cut(s)	75
Sse9I	AATT	2 cut(s)	113, 192
StyD4I	CCNGG	1 cut(s)	222
TaaI	ACNGT	3 cut(s)	135, 232, 370
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	1 cut(s)	12
TasI	AATT	2 cut(s)	113, 192
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TscAI	CASTG	2 cut(s)	193, 247
TseFI	GTSAC	4 cut(s)	19, 28, 100, 184
Tsp45I	GTSAC	4 cut(s)	19, 28, 100, 184
TspDTI	ATGAA	1 cut(s)	309
TspRI	CASTG	2 cut(s)	193, 247
Van91I	CCANNNNNTGG	1 cut(s)	39
XcmI	CCANNNNNNNNNTGG	1 cut(s)	89
Zsp2I	ATGCAT	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.