Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002187

Physical Location & Seq

Genomic Coordinates Reverse (-)

7716193 .. 7717744

Gene Structure 1552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0045300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGCTGCATGTAGTCTGCAATCCCCGAGTAGGGTGCTCTCCAGAGGCTATATTGGCTGCTTTTGATGATGCTATTGCTAATGGAGTTGACATTATCATAGGACCTGATAAGCTAATCTCATTCAATGATGATCCTCTAGCAATTGGTGCTTTTCATGCAATGGAGAAAGGGATACTAACCAAAAACCCTTCAGGAAATGATGGCCCACTTGGTAATACAAGAAGTCTTAACACCATGGCATGGATACTTACAGTTGCAGCAAGTAGCACAGACCGTCAGATCATTGACAAGCAGGTTTTAAGTTACCAAGACTATAATCTGGTCAAGTCCTACATGAACTCCAGCAAAGATCCTCGAGCCAGCATACTAAAGAGTGAAGACATCAACAATCCTGCTGCACCTGTTGTCGCTTCATTCTCTTCATGTGGACCTAATCAAATTTTACCAGAAATTAGTAAGCCAGATATAACTGCCTCAGGGTTAGATATTTGGCTGCATATTTGCCTAGCTGAAGCTCCTATCACAGGTGAATTTGCTTTTGGATCTGGACATATCAATCCTTTAATAGCTATAAACCCTGGGCTTGTGATCACAGATCACAATTACCCTTCAATGGTAGCTATTGTTGCACCAATGACACCATTTACGCTTAGAAGTCATAGAAGAGTTAAAAATGTTGGCCATGCAAACTCCACTTACCCAGCCAAAATCTGGTCAAATTCTCAAGTTGACATCAAAGTGATGCCTGAAGTTCTTGCCTTCAAGTCATTGAATGAGGAGAAGACTTTCAAAGTGACCATTATTGGAAGAGGTATACCAGATGGATCCCATGTATCTGCTTCACTGCTCTGGTCTGATAGTACTCATAGCGTTAGAAGTCCAAGGTCTAGTACAAAGCACAGCAGCATAATCACAAATTTCTTGGTTGCATCACTCGGCTTCATTGTTGCGAAGCAATCAATTTTTCTGATTTTTCTGACACAGGACATTTGTTCTTGTAATAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF702

Protein Analysis

335

Amino Acids

36.11

Weight (kDa)

6.79

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
fn3_6	PF17766	199 - 294	7.9e-22	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54430
fragaria_vesca	FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110
malus_domestica	MD02G1285800.v1.1
prunus_persica	Prupe.2G036500_v2.0.a1 Prupe.2G036500_v2.0.a1 Prupe.2G036500_v2.0.a1 Prupe.2G036500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0319531 RchiOBHm_Chr1g0324311
rosa_laevigata	RLG00000008631 RLG00000017375 RLG00000030203 RLG00000033698
rosa_multiflora	Rmu_sc0004082.1_g000006 Rmu_sc0004082.1_g000019 Rmu_sc0004082.1_g000020
rosa_roxburghii	Rroxscaffold_159G00432690 Rroxscaffold_159G00432760 Rroxscaffold_159G00432820 Rroxscaffold_4G00325640 Rroxscaffold_4G00325700
rosa_rugosa	Rorug01G0045000 Rorug01G0045100 Rorug01G0045200 Rorug01G0045300 Rorug01G0045400 Rorug01G0045500
rosa_samantha	Rh1AG061000 Rh1BG052100 Rh1CG063200 Rh1DG067600 Rh6AG126800 Rh6CG264300 Rh7CG487400
rosa_wichuraiana	Rw1G005190 Rw4G000540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	283
AccB7I	CCANNNNNTGG	2 cut(s)	240, 711
AccI	GTMKAC	1 cut(s)	814
AclWI	GGATC	5 cut(s)	125, 344, 550, 819, 832
AcoI	YGGCCR	1 cut(s)	679
AcsI	RAATTY	4 cut(s)	438, 530, 718, 916
AcuI	CTGAAG	3 cut(s)	174, 531, 768
AfaI	GTAC	2 cut(s)	862, 892
AfiI	CCNNNNNNNGG	6 cut(s)	29, 30, 240, 524, 613, 711
AgsI	TTSAA	5 cut(s)	124, 612, 763, 772, 790
AjnI	CCWGG	1 cut(s)	577
AjuI	GAANNNNNNNTTGG	2 cut(s)	522, 554
AluBI	AGCT	5 cut(s)	112, 509, 515, 569, 620
AluI	AGCT	5 cut(s)	112, 509, 515, 569, 620
Alw21I	GWGCWC	1 cut(s)	38
AlwI	GGATC	5 cut(s)	125, 344, 550, 819, 832
Ama87I	CYCGRG	2 cut(s)	24, 354
AoxI	GGCC	2 cut(s)	202, 679
ApeKI	GCWGC	6 cut(s)	4, 56, 257, 395, 493, 903
ApoI	RAATTY	4 cut(s)	438, 530, 718, 916
Asp700I	GAANNNNTTC	1 cut(s)	785
AspS9I	GGNCC	3 cut(s)	101, 203, 428
AsuHPI	GGTGA	1 cut(s)	539
AvaI	CYCGRG	2 cut(s)	24, 354
AvaII	GGWCC	2 cut(s)	101, 428
AxyI	CCTNAGG	1 cut(s)	475
BalI	TGGCCA	1 cut(s)	681
BamHI	GGATCC	1 cut(s)	824
BbsI	GAAGAC	2 cut(s)	384, 788
Bbv12I	GWGCWC	1 cut(s)	38
BbvI	GCAGC	5 cut(s)	43, 269, 382, 480, 915
BccI	CCATC	2 cut(s)	194, 815
BcgI	CGANNNNNNTGC	2 cut(s)	15, 49
BciT130I	CCWGG	1 cut(s)	579
BciVI	GTATCC	2 cut(s)	165, 237
BclI	TGATCA	1 cut(s)	588
BfaI	CTAG	3 cut(s)	137, 506, 888
BfuAI	ACCTGC	1 cut(s)	283
BfuI	GTATCC	2 cut(s)	165, 237
BisI	GCNGC	6 cut(s)	5, 57, 258, 396, 494, 904
BlsI	GCNGC	6 cut(s)	6, 58, 259, 397, 495, 905
BmcAI	AGTACT	1 cut(s)	862
Bme1390I	CCNGG	1 cut(s)	579
Bme18I	GGWCC	2 cut(s)	101, 428
BmeT110I	CYCGRG	2 cut(s)	24, 354
BmgT120I	GGNCC	3 cut(s)	101, 203, 428
BmiI	GGNNCC	1 cut(s)	826
BmrFI	CCNGG	1 cut(s)	579
BmsI	GCATC	3 cut(s)	58, 732, 938
BpiI	GAAGAC	2 cut(s)	384, 788
BpmI	CTGGAG	2 cut(s)	24, 325
BpuEI	CTTGAG	1 cut(s)	708
BsaJI	CCNNGG	4 cut(s)	234, 577, 578, 881
BsaXI	ACNNNNNCTCC	2 cut(s)	323, 353
Bsc4I	CCNNNNNNNGG	6 cut(s)	29, 30, 240, 524, 613, 711
Bse21I	CCTNAGG	1 cut(s)	475
Bse3DI	GCAATG	1 cut(s)	165
BseBI	CCWGG	1 cut(s)	579
BseDI	CCNNGG	4 cut(s)	234, 577, 578, 881
BseLI	CCNNNNNNNGG	6 cut(s)	29, 30, 240, 524, 613, 711
BseMI	GCAATG	1 cut(s)	165
BseMII	CTCAG	1 cut(s)	489
BseRI	GAGGAG	1 cut(s)	791
BseXI	GCAGC	5 cut(s)	43, 269, 382, 480, 915
BseYI	CCCAGC	1 cut(s)	700
BsgI	GTGCAG	1 cut(s)	381
BshFI	GGCC	2 cut(s)	204, 681
BsiHKAI	GWGCWC	1 cut(s)	38
BsiHKCI	CYCGRG	2 cut(s)	24, 354
BslI	CCNNNNNNNGG	6 cut(s)	29, 30, 240, 524, 613, 711
BsnI	GGCC	2 cut(s)	204, 681
BsoBI	CYCGRG	2 cut(s)	24, 354
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	7 cut(s)	130, 279, 349, 542, 588, 595, 824
Bsp19I	CCATGG	1 cut(s)	234
BspANI	GGCC	2 cut(s)	204, 681
BspCNI	CTCAG	1 cut(s)	488
BspLI	GGNNCC	1 cut(s)	826
BspMI	ACCTGC	1 cut(s)	283
BspPI	GGATC	5 cut(s)	125, 344, 550, 819, 832
BsrDI	GCAATG	1 cut(s)	165
BssECI	CCNNGG	4 cut(s)	234, 577, 578, 881
BssMI	GATC	7 cut(s)	130, 279, 349, 542, 588, 595, 824
BssNAI	GTATAC	1 cut(s)	815
BssT1I	CCWWGG	2 cut(s)	234, 881
Bst1107I	GTATAC	1 cut(s)	815
Bst2UI	CCWGG	1 cut(s)	579
Bst4CI	ACNGT	2 cut(s)	253, 275
Bst6I	CTCTTC	3 cut(s)	424, 658, 802
BstAPI	GCANNNNNTGC	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	361
BstDEI	CTNAG	2 cut(s)	475, 650
BstDSI	CCRYGG	1 cut(s)	234
BstENI	CCTNNNNNAGG	1 cut(s)	522
BstKTI	GATC	7 cut(s)	133, 282, 352, 545, 591, 598, 827
BstMBI	GATC	7 cut(s)	130, 279, 349, 542, 588, 595, 824
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 146, 155, 626
BstNI	CCWGG	1 cut(s)	579
BstNSI	RCATGY	1 cut(s)	11
BstSCI	CCNGG	1 cut(s)	577
BstV1I	GCAGC	5 cut(s)	43, 269, 382, 480, 915
BstV2I	GAAGAC	2 cut(s)	384, 788
BstX2I	RGATCY	3 cut(s)	349, 542, 824
BstYI	RGATCY	3 cut(s)	349, 542, 824
BstZ17I	GTATAC	1 cut(s)	815
Bsu36I	CCTNAGG	1 cut(s)	475
BsuI	GTATCC	2 cut(s)	165, 237
BsuRI	GGCC	2 cut(s)	204, 681
BtgI	CCRYGG	1 cut(s)	234
BtsI	GCAGTG	1 cut(s)	842
BtsIMutI	CAGTG	1 cut(s)	842
BveI	ACCTGC	1 cut(s)	283
Cac8I	GCNNGC	1 cut(s)	361
Cfr13I	GGNCC	3 cut(s)	101, 203, 428
Csp6I	GTAC	2 cut(s)	861, 891
CviAII	CATG	8 cut(s)	8, 155, 235, 240, 334, 423, 683, 830
CviQI	GTAC	2 cut(s)	861, 891
DdeI	CTNAG	2 cut(s)	475, 650
DpnI	GATC	7 cut(s)	132, 281, 351, 544, 590, 597, 826
DpnII	GATC	7 cut(s)	130, 279, 349, 542, 588, 595, 824
EaeI	YGGCCR	1 cut(s)	679
Eam1104I	CTCTTC	3 cut(s)	424, 658, 802
EarI	CTCTTC	3 cut(s)	424, 658, 802
Eco130I	CCWWGG	2 cut(s)	234, 881
Eco47I	GGWCC	2 cut(s)	101, 428
Eco57I	CTGAAG	3 cut(s)	174, 531, 768
Eco81I	CCTNAGG	1 cut(s)	475
Eco88I	CYCGRG	2 cut(s)	24, 354
EcoNI	CCTNNNNNAGG	1 cut(s)	522
EcoO109I	RGGNCCY	1 cut(s)	101
EcoRII	CCWGG	1 cut(s)	577
EcoT14I	CCWWGG	2 cut(s)	234, 881
ErhI	CCWWGG	2 cut(s)	234, 881
FaeI	CATG	8 cut(s)	11, 158, 238, 243, 337, 426, 686, 833
FatI	CATG	8 cut(s)	7, 154, 234, 239, 333, 422, 682, 829
FbaI	TGATCA	1 cut(s)	588
FblI	GTMKAC	1 cut(s)	814
Fnu4HI	GCNGC	6 cut(s)	5, 57, 258, 396, 494, 904
Fsp4HI	GCNGC	6 cut(s)	5, 57, 258, 396, 494, 904
FspBI	CTAG	3 cut(s)	137, 506, 888
GluI	GCNGC	6 cut(s)	5, 57, 258, 396, 494, 904
GsaI	CCCAGC	1 cut(s)	704
GsuI	CTGGAG	2 cut(s)	24, 325
HaeIII	GGCC	2 cut(s)	204, 681
Hin1II	CATG	8 cut(s)	11, 158, 238, 243, 337, 426, 686, 833
HincII	GTYRAC	2 cut(s)	88, 730
HindII	GTYRAC	2 cut(s)	88, 730
HphI	GGTGA	1 cut(s)	539
Hpy166II	GTNNAC	4 cut(s)	88, 428, 730, 815
Hpy188I	TCNGA	4 cut(s)	279, 856, 969, 978
Hpy188III	TCNNGA	3 cut(s)	41, 192, 546
Hpy8I	GTNNAC	4 cut(s)	88, 428, 730, 815
HpyAV	CCTTC	3 cut(s)	198, 618, 769
HpyCH4III	ACNGT	2 cut(s)	253, 275
HpyCH4V	TGCA	9 cut(s)	7, 18, 158, 257, 398, 496, 629, 686, 929
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 146, 155, 626
HpyF3I	CTNAG	2 cut(s)	475, 650
Hsp92II	CATG	8 cut(s)	11, 158, 238, 243, 337, 426, 686, 833
Ksp22I	TGATCA	1 cut(s)	588
Kzo9I	GATC	7 cut(s)	130, 279, 349, 542, 588, 595, 824
LmnI	GCTCC	1 cut(s)	520
Lsp1109I	GCAGC	5 cut(s)	43, 269, 382, 480, 915
LweI	GCATC	3 cut(s)	58, 732, 938
MaeI	CTAG	3 cut(s)	137, 506, 888
MaeIII	GTNAC	2 cut(s)	302, 793
MalI	GATC	7 cut(s)	132, 281, 351, 544, 590, 597, 826
MboI	GATC	7 cut(s)	130, 279, 349, 542, 588, 595, 824
MboII	GAAGA	5 cut(s)	389, 411, 675, 793, 819
MfeI	CAATTG	1 cut(s)	141
MflI	RGATCY	3 cut(s)	349, 542, 824
MhlI	GDGCHC	1 cut(s)	38
MlsI	TGGCCA	1 cut(s)	681
MluCI	AATT	8 cut(s)	141, 438, 450, 530, 601, 718, 916, 960
MluNI	TGGCCA	1 cut(s)	681
MnlI	CCTC	6 cut(s)	37, 144, 363, 484, 769, 803
Mox20I	TGGCCA	1 cut(s)	681
MroXI	GAANNNNTTC	1 cut(s)	785
MscI	TGGCCA	1 cut(s)	681
MseI	TTAA	4 cut(s)	228, 299, 563, 669
MslI	CAYNNNNRTG	1 cut(s)	737
Msp20I	TGGCCA	1 cut(s)	681
MspR9I	CCNGG	1 cut(s)	579
MunI	CAATTG	1 cut(s)	141
MvaI	CCWGG	1 cut(s)	579
MwoI	GCNNNNNNNGC	4 cut(s)	53, 146, 155, 626
NcoI	CCATGG	1 cut(s)	234
NdeII	GATC	7 cut(s)	130, 279, 349, 542, 588, 595, 824
NlaIII	CATG	8 cut(s)	11, 158, 238, 243, 337, 426, 686, 833
NlaIV	GGNNCC	1 cut(s)	826
NmeAIII	GCCGAG	1 cut(s)	915
NmuCI	GTSAC	1 cut(s)	793
NspI	RCATGY	1 cut(s)	11
PaeR7I	CTCGAG	1 cut(s)	354
PasI	CCCWGGG	1 cut(s)	578
PdmI	GAANNNNTTC	1 cut(s)	785
PflMI	CCANNNNNTGG	2 cut(s)	240, 711
PkrI	GCNGC	6 cut(s)	6, 58, 259, 397, 495, 905
PpuMI	RGGWCCY	1 cut(s)	101
Psp5II	RGGWCCY	1 cut(s)	101
Psp6I	CCWGG	1 cut(s)	577
PspFI	CCCAGC	1 cut(s)	700
PspGI	CCWGG	1 cut(s)	577
PspN4I	GGNNCC	1 cut(s)	826
PspPI	GGNCC	3 cut(s)	101, 203, 428
PspPPI	RGGWCCY	1 cut(s)	101
PspXI	VCTCGAGB	1 cut(s)	354
PsuI	RGATCY	3 cut(s)	349, 542, 824
RsaI	GTAC	2 cut(s)	862, 892
RsaNI	GTAC	2 cut(s)	861, 891
RseI	CAYNNNNRTG	1 cut(s)	737
SaqAI	TTAA	4 cut(s)	228, 299, 563, 669
SatI	GCNGC	6 cut(s)	5, 57, 258, 396, 494, 904
Sau3AI	GATC	7 cut(s)	130, 279, 349, 542, 588, 595, 824
Sau96I	GGNCC	3 cut(s)	101, 203, 428
ScaI	AGTACT	1 cut(s)	862
ScrFI	CCNGG	1 cut(s)	579
SduI	GDGCHC	1 cut(s)	38
SfaNI	GCATC	3 cut(s)	58, 732, 938
Sfr274I	CTCGAG	1 cut(s)	354
SinI	GGWCC	2 cut(s)	101, 428
SlaI	CTCGAG	1 cut(s)	354
SmiMI	CAYNNNNRTG	1 cut(s)	737
SmlI	CTYRAG	2 cut(s)	354, 723
SmoI	CTYRAG	2 cut(s)	354, 723
Sse9I	AATT	8 cut(s)	141, 438, 450, 530, 601, 718, 916, 960
SspMI	CTAG	3 cut(s)	137, 506, 888
StyD4I	CCNGG	1 cut(s)	577
StyI	CCWWGG	2 cut(s)	234, 881
TaaI	ACNGT	2 cut(s)	253, 275
TaqI	TCGA	1 cut(s)	355
TasI	AATT	8 cut(s)	141, 438, 450, 530, 601, 718, 916, 960
TatI	WGTACW	2 cut(s)	860, 890
Tru1I	TTAA	4 cut(s)	228, 299, 563, 669
Tru9I	TTAA	4 cut(s)	228, 299, 563, 669
TscAI	CASTG	1 cut(s)	849
TseFI	GTSAC	1 cut(s)	793
TseI	GCWGC	6 cut(s)	4, 56, 257, 395, 493, 903
Tsp45I	GTSAC	1 cut(s)	793
TspDTI	ATGAA	5 cut(s)	143, 350, 402, 411, 931
TspRI	CASTG	1 cut(s)	849
Van91I	CCANNNNNTGG	2 cut(s)	240, 711
VpaK11BI	GGWCC	2 cut(s)	101, 428
XagI	CCTNNNNNAGG	1 cut(s)	522
XapI	RAATTY	4 cut(s)	438, 530, 718, 916
XceI	RCATGY	1 cut(s)	11
XcmI	CCANNNNNNNNNTGG	1 cut(s)	708
XhoI	CTCGAG	1 cut(s)	354
XmiI	GTMKAC	1 cut(s)	814
XmnI	GAANNNNTTC	1 cut(s)	785
XspI	CTAG	3 cut(s)	137, 506, 888
ZrmI	AGTACT	1 cut(s)	862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.