Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004082.1

Orthogroup ID

OG0002187

Physical Location & Seq

Genomic Coordinates Reverse (-)

80768 .. 82698

Gene Structure 1931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004082.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

atgttgggtctgagagatatcctcctgattgctccaaaccattcttctgtgcaccaacaaaaccaacccatttcctctgaccacccagctctccctcttccttcctccacagctcttggggttggcctcggtattttccctctcctcactgcaaccccatgtggccaaaatgctccgaccgccgacggcaatccggacaattcacgtttctggagcctgagaacgtacccggagctgaattcttccaagcaagacatgctcagttttgggaatcacggcgccgccgaaagtcaacaggtggcggaatccgatgacggaaatgtgaacggagaaggtggtggtcgtggcggtgaagacagtggcatgagggcttgcaaggactgtgggaacagagccaagaaaggctgcgagtattcaaggtgcaggacttgctgcagaggcaggggatatgactgctccactcacgtgaggagcacgtgggttccggcagcgaggcggcgggaaaggcagatgggggtgaccgttgctgttgctggtggtgttgctagtggcggcggcggtgaaggtgacaatagaagttcttccggttcttcttccgttgccaaaagaccaagagtaatgatgccatcaaagaatgcaaatgcaaatctcagacagtcattaccagatcaagttcgggtaccagctgtttttaagtgccatagagtcactgccattagcaatggtgaggccgagattgcttaccaggctactgtgaaaatcagtgatgcaaatctcagacagtcattaccagatcaagttcgggtaccagctgtttttaagtgccatagagtcactgcaattagcaatggtgaagctgagattgcttaccaggctactgtgaaaatcagtggtcatgtattcaaggggttgctctatgatcgttgggttgataagaagaatgaatacccttgtatttcacatatgcatttgggaagtggtagtaaccaaaggaatggagactcttcttctccaactgtgcctccatccaatgtctgtgtggcgtccaccagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF702

Protein Analysis

351

Amino Acids

37.29

Weight (kDa)

9.02

Isoelectric Point (pI)

48.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54430
fragaria_vesca	FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110
malus_domestica	MD02G1285800.v1.1
prunus_persica	Prupe.2G036500_v2.0.a1 Prupe.2G036500_v2.0.a1 Prupe.2G036500_v2.0.a1 Prupe.2G036500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0319531 RchiOBHm_Chr1g0324311
rosa_laevigata	RLG00000008631 RLG00000017375 RLG00000030203 RLG00000033698
rosa_multiflora	Rmu_sc0004082.1_g000006 Rmu_sc0004082.1_g000019 Rmu_sc0004082.1_g000020
rosa_roxburghii	Rroxscaffold_159G00432690 Rroxscaffold_159G00432760 Rroxscaffold_159G00432820 Rroxscaffold_4G00325640 Rroxscaffold_4G00325700
rosa_rugosa	Rorug01G0045000 Rorug01G0045100 Rorug01G0045200 Rorug01G0045300 Rorug01G0045400 Rorug01G0045500
rosa_samantha	Rh1AG061000 Rh1BG052100 Rh1CG063200 Rh1DG067600 Rh6AG126800 Rh6CG264300 Rh7CG487400
rosa_wichuraiana	Rw1G005190 Rw4G000540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	679, 805
AccB1I	GGYRCC	3 cut(s)	278, 679, 805
AccIII	TCCGGA	1 cut(s)	193
AciI	CCGC	9 cut(s)	180, 282, 302, 348, 496, 499, 552, 555, 558
AcoI	YGGCCR	1 cut(s)	163
AcsI	RAATTY	1 cut(s)	238
AcvI	CACGTG	2 cut(s)	466, 477
AcyI	GRCGYC	2 cut(s)	279, 1043
AfaI	GTAC	3 cut(s)	227, 681, 807
AgsI	TTSAA	2 cut(s)	417, 904
AjnI	CCWGG	2 cut(s)	744, 870
AjuI	GAANNNNNNNTTGG	2 cut(s)	28, 60
AleI	CACNNNNGTG	1 cut(s)	464
AluBI	AGCT	7 cut(s)	89, 113, 235, 686, 812, 857, 1053
AluI	AGCT	7 cut(s)	89, 113, 235, 686, 812, 857, 1053
Alw21I	GWGCWC	2 cut(s)	54, 476
Alw26I	GTCTC	1 cut(s)	993
Alw44I	GTGCAC	1 cut(s)	50
Aor13HI	TCCGGA	1 cut(s)	193
AoxI	GGCC	3 cut(s)	124, 163, 729
ApaLI	GTGCAC	1 cut(s)	50
ApeKI	GCWGC	3 cut(s)	405, 432, 488
ApoI	RAATTY	1 cut(s)	238
Asp700I	GAANNNNTTC	1 cut(s)	580
Asp718I	GGTACC	2 cut(s)	679, 805
AspLEI	GCGC	1 cut(s)	281
AsuC2I	CCSGG	1 cut(s)	230
AsuHPI	GGTGA	6 cut(s)	362, 529, 572, 578, 737, 863
BaeGI	GKGCMC	1 cut(s)	54
BalI	TGGCCA	1 cut(s)	165
BanI	GGYRCC	3 cut(s)	278, 679, 805
BarI	GAAGNNNNNNTAC	2 cut(s)	929, 961
BbrPI	CACGTG	2 cut(s)	466, 477
BbsI	GAAGAC	1 cut(s)	360
Bbv12I	GWGCWC	2 cut(s)	54, 476
BbvI	GCAGC	3 cut(s)	392, 419, 500
BccI	CCATC	3 cut(s)	505, 634, 1033
BceAI	ACGGC	2 cut(s)	202, 292
BciT130I	CCWGG	2 cut(s)	746, 872
BcnI	CCSGG	1 cut(s)	230
BcoDI	GTCTC	1 cut(s)	993
BfaI	CTAG	1 cut(s)	546
BfmI	CTRYAG	1 cut(s)	433
BfoI	RGCGCY	1 cut(s)	282
BisI	GCNGC	7 cut(s)	282, 406, 433, 489, 497, 553, 556
BlsI	GCNGC	7 cut(s)	283, 407, 434, 490, 498, 554, 557
Bme1390I	CCNGG	3 cut(s)	230, 746, 872
BmiI	GGNNCC	5 cut(s)	215, 280, 483, 681, 807
BmrFI	CCNGG	3 cut(s)	230, 746, 872
BmsI	GCATC	2 cut(s)	612, 757
BpiI	GAAGAC	1 cut(s)	360
BplI	GAGNNNNNCTC	1 cut(s)	38
BpmI	CTGGAG	1 cut(s)	232
BpuMI	CCSGG	1 cut(s)	230
BsaAI	YACGTR	2 cut(s)	466, 477
BsaBI	GATNNNNATC	1 cut(s)	771
BsaHI	GRCGYC	2 cut(s)	279, 1043
BsaJI	CCNNGG	1 cut(s)	127
BsaWI	WCCGGW	2 cut(s)	193, 584
BsaXI	ACNNNNNCTCC	2 cut(s)	1006, 1036
Bse3DI	GCAATG	2 cut(s)	727, 853
Bse8I	GATNNNNATC	1 cut(s)	771
BseAI	TCCGGA	1 cut(s)	193
BseBI	CCWGG	2 cut(s)	746, 872
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	1 cut(s)	1025
BseJI	GATNNNNATC	1 cut(s)	771
BseMI	GCAATG	2 cut(s)	727, 853
BseMII	CTCAG	5 cut(s)	209, 274, 664, 790, 849
BseRI	GAGGAG	2 cut(s)	134, 484
BseSI	GKGCMC	1 cut(s)	54
BseXI	GCAGC	3 cut(s)	392, 419, 500
BseYI	CCCAGC	1 cut(s)	85
BsgI	GTGCAG	1 cut(s)	442
Bsh1285I	CGRYCG	1 cut(s)	180
BshFI	GGCC	3 cut(s)	126, 165, 731
BshNI	GGYRCC	3 cut(s)	278, 679, 805
BsiEI	CGRYCG	1 cut(s)	180
BsiHKAI	GWGCWC	2 cut(s)	54, 476
BsiSI	CCGG	4 cut(s)	194, 230, 485, 585
BsmAI	GTCTC	1 cut(s)	993
BsmI	GAATGC	1 cut(s)	640
BsnI	GGCC	3 cut(s)	126, 165, 731
Bsp1286I	GDGCHC	2 cut(s)	54, 476
Bsp13I	TCCGGA	1 cut(s)	193
Bsp143I	GATC	3 cut(s)	667, 793, 919
BspACI	CCGC	9 cut(s)	180, 282, 302, 348, 496, 499, 552, 555, 558
BspANI	GGCC	3 cut(s)	126, 165, 731
BspCNI	CTCAG	5 cut(s)	210, 273, 663, 789, 850
BspEI	TCCGGA	1 cut(s)	193
BspLI	GGNNCC	5 cut(s)	215, 280, 483, 681, 807
BspMAI	CTGCAG	1 cut(s)	437
BspT107I	GGYRCC	3 cut(s)	278, 679, 805
BsrDI	GCAATG	2 cut(s)	727, 853
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	3 cut(s)	667, 793, 919
BssNI	GRCGYC	2 cut(s)	279, 1043
Bst2UI	CCWGG	2 cut(s)	746, 872
Bst4CI	ACNGT	8 cut(s)	359, 383, 523, 657, 754, 783, 880, 1018
Bst6I	CTCTTC	2 cut(s)	102, 1009
BstACI	GRCGYC	2 cut(s)	279, 1043
BstAPI	GCANNNNNTGC	2 cut(s)	256, 429
BstBAI	YACGTR	2 cut(s)	466, 477
BstC8I	GCNNGC	1 cut(s)	373
BstDEI	CTNAG	6 cut(s)	11, 218, 260, 650, 776, 858
BstEII	GGTNACC	1 cut(s)	517
BstF5I	GGATG	1 cut(s)	1025
BstH2I	RGCGCY	1 cut(s)	282
BstHHI	GCGC	1 cut(s)	281
BstKTI	GATC	3 cut(s)	670, 796, 922
BstMAI	GTCTC	1 cut(s)	993
BstMBI	GATC	3 cut(s)	667, 793, 919
BstMCI	CGRYCG	1 cut(s)	180
BstMWI	GCNNNNNNNGC	9 cut(s)	179, 256, 429, 438, 505, 737, 746, 863, 872
BstNI	CCWGG	2 cut(s)	746, 872
BstNSI	RCATGY	1 cut(s)	259
BstPI	GGTNACC	1 cut(s)	517
BstSCI	CCNGG	3 cut(s)	228, 744, 870
BstSFI	CTRYAG	1 cut(s)	433
BstSLI	GKGCMC	1 cut(s)	54
BstV1I	GCAGC	3 cut(s)	392, 419, 500
BstV2I	GAAGAC	1 cut(s)	360
BstXI	CCANNNNNNTGG	1 cut(s)	995
BsuRI	GGCC	3 cut(s)	126, 165, 731
BtsCI	GGATG	1 cut(s)	1025
BtsI	GCAGTG	3 cut(s)	147, 708, 834
BtsIMutI	CAGTG	6 cut(s)	147, 364, 708, 769, 834, 895
Cac8I	GCNNGC	1 cut(s)	373
CfoI	GCGC	1 cut(s)	281
CseI	GACGC	1 cut(s)	1032
Csp6I	GTAC	3 cut(s)	226, 680, 806
CspCI	CAANNNNNGTGG	4 cut(s)	97, 132, 364, 399
CviAII	CATG	4 cut(s)	159, 256, 364, 896
CviQI	GTAC	3 cut(s)	226, 680, 806
DdeI	CTNAG	6 cut(s)	11, 218, 260, 650, 776, 858
DinI	GGCGCC	1 cut(s)	280
DpnI	GATC	3 cut(s)	669, 795, 921
DpnII	GATC	3 cut(s)	667, 793, 919
EaeI	YGGCCR	1 cut(s)	163
Eam1104I	CTCTTC	2 cut(s)	102, 1009
EarI	CTCTTC	2 cut(s)	102, 1009
EciI	GGCGGA	1 cut(s)	317
Eco32I	GATATC	1 cut(s)	19
Eco72I	CACGTG	2 cut(s)	466, 477
Eco91I	GGTNACC	1 cut(s)	517
EcoO65I	GGTNACC	1 cut(s)	517
EcoRI	GAATTC	1 cut(s)	238
EcoRII	CCWGG	2 cut(s)	744, 870
EcoRV	GATATC	1 cut(s)	19
EcoT22I	ATGCAT	1 cut(s)	969
EgeI	GGCGCC	1 cut(s)	280
EheI	GGCGCC	1 cut(s)	280
FaeI	CATG	4 cut(s)	162, 259, 367, 899
FatI	CATG	4 cut(s)	158, 255, 363, 895
FauI	CCCGC	1 cut(s)	492
FauNDI	CATATG	1 cut(s)	963
Fnu4HI	GCNGC	7 cut(s)	282, 406, 433, 489, 497, 553, 556
FokI	GGATG	1 cut(s)	1012
Fsp4HI	GCNGC	7 cut(s)	282, 406, 433, 489, 497, 553, 556
FspBI	CTAG	1 cut(s)	546
GlaI	GCGC	1 cut(s)	280
GluI	GCNGC	7 cut(s)	282, 406, 433, 489, 497, 553, 556
GsaI	CCCAGC	1 cut(s)	89
GsuI	CTGGAG	1 cut(s)	232
HaeII	RGCGCY	1 cut(s)	282
HaeIII	GGCC	3 cut(s)	126, 165, 731
HapII	CCGG	4 cut(s)	194, 230, 485, 585
HgaI	GACGC	1 cut(s)	1032
HhaI	GCGC	1 cut(s)	281
Hin1I	GRCGYC	2 cut(s)	279, 1043
Hin1II	CATG	4 cut(s)	162, 259, 367, 899
Hin6I	GCGC	1 cut(s)	279
HinP1I	GCGC	1 cut(s)	279
HincII	GTYRAC	1 cut(s)	293
HindII	GTYRAC	1 cut(s)	293
HinfI	GANTC	5 cut(s)	271, 305, 705, 831, 1001
HpaII	CCGG	4 cut(s)	194, 230, 485, 585
HphI	GGTGA	6 cut(s)	362, 529, 572, 578, 737, 863
Hpy166II	GTNNAC	4 cut(s)	52, 293, 325, 1047
Hpy188I	TCNGA	6 cut(s)	12, 79, 177, 310, 653, 779
Hpy188III	TCNNGA	3 cut(s)	25, 194, 211
Hpy8I	GTNNAC	4 cut(s)	52, 293, 325, 1047
Hpy99I	CGWCG	1 cut(s)	188
HpyAV	CCTTC	3 cut(s)	111, 326, 557
HpyCH4III	ACNGT	8 cut(s)	359, 383, 523, 657, 754, 783, 880, 1018
HpyCH4IV	ACGT	4 cut(s)	205, 224, 465, 476
HpyF10VI	GCNNNNNNNGC	9 cut(s)	179, 256, 429, 438, 505, 737, 746, 863, 872
HpyF3I	CTNAG	6 cut(s)	11, 218, 260, 650, 776, 858
HpySE526I	ACGT	4 cut(s)	205, 224, 465, 476
Hsp92I	GRCGYC	2 cut(s)	279, 1043
Hsp92II	CATG	4 cut(s)	162, 259, 367, 899
HspAI	GCGC	1 cut(s)	279
KasI	GGCGCC	1 cut(s)	278
Kpn2I	TCCGGA	1 cut(s)	193
KpnI	GGTACC	2 cut(s)	683, 809
Kzo9I	GATC	3 cut(s)	667, 793, 919
LmnI	GCTCC	6 cut(s)	37, 178, 213, 232, 461, 471
Lsp1109I	GCAGC	3 cut(s)	392, 419, 500
LweI	GCATC	2 cut(s)	612, 757
MaeI	CTAG	1 cut(s)	546
MaeII	ACGT	4 cut(s)	205, 224, 465, 476
MaeIII	GTNAC	5 cut(s)	517, 566, 706, 832, 983
MalI	GATC	3 cut(s)	669, 795, 921
MboI	GATC	3 cut(s)	667, 793, 919
MhlI	GDGCHC	2 cut(s)	54, 476
MlsI	TGGCCA	1 cut(s)	165
MluCI	AATT	3 cut(s)	199, 238, 840
MluNI	TGGCCA	1 cut(s)	165
Mly113I	GGCGCC	1 cut(s)	279
MlyI	GAGTC	3 cut(s)	714, 840, 995
MmeI	TCCRAC	2 cut(s)	200, 1037
Mox20I	TGGCCA	1 cut(s)	165
Mph1103I	ATGCAT	1 cut(s)	969
MroI	TCCGGA	1 cut(s)	193
MroXI	GAANNNNTTC	1 cut(s)	580
MscI	TGGCCA	1 cut(s)	165
MseI	TTAA	2 cut(s)	693, 819
MslI	CAYNNNNRTG	1 cut(s)	464
Msp20I	TGGCCA	1 cut(s)	165
MspA1I	CMGCKG	3 cut(s)	686, 812, 1053
MspI	CCGG	4 cut(s)	194, 230, 485, 585
MspR9I	CCNGG	3 cut(s)	230, 746, 872
Mva1269I	GAATGC	1 cut(s)	640
MvaI	CCWGG	2 cut(s)	746, 872
MwoI	GCNNNNNNNGC	9 cut(s)	179, 256, 429, 438, 505, 737, 746, 863, 872
NarI	GGCGCC	1 cut(s)	279
NciI	CCSGG	1 cut(s)	230
NdeI	CATATG	1 cut(s)	963
NdeII	GATC	3 cut(s)	667, 793, 919
NlaIII	CATG	4 cut(s)	162, 259, 367, 899
NlaIV	GGNNCC	5 cut(s)	215, 280, 483, 681, 807
NmeAIII	GCCGAG	1 cut(s)	757
NmuCI	GTSAC	4 cut(s)	517, 566, 706, 832
NsiI	ATGCAT	1 cut(s)	969
NspI	RCATGY	1 cut(s)	259
OliI	CACNNNNGTG	1 cut(s)	464
PcsI	WCGNNNNNNNCGW	1 cut(s)	282
PctI	GAATGC	1 cut(s)	640
PdmI	GAANNNNTTC	1 cut(s)	580
PfeI	GAWTC	2 cut(s)	271, 305
PkrI	GCNGC	7 cut(s)	283, 407, 434, 490, 498, 554, 557
PleI	GAGTC	3 cut(s)	713, 839, 995
PluTI	GGCGCC	1 cut(s)	282
PmaCI	CACGTG	2 cut(s)	466, 477
PmlI	CACGTG	2 cut(s)	466, 477
PpsI	GAGTC	3 cut(s)	713, 839, 995
Ppu21I	YACGTR	2 cut(s)	466, 477
Psp6I	CCWGG	2 cut(s)	744, 870
PspCI	CACGTG	2 cut(s)	466, 477
PspEI	GGTNACC	1 cut(s)	517
PspFI	CCCAGC	1 cut(s)	85
PspGI	CCWGG	2 cut(s)	744, 870
PspN4I	GGNNCC	5 cut(s)	215, 280, 483, 681, 807
PstI	CTGCAG	1 cut(s)	437
PvuII	CAGCTG	3 cut(s)	686, 812, 1053
RsaI	GTAC	3 cut(s)	227, 681, 807
RsaNI	GTAC	3 cut(s)	226, 680, 806
RseI	CAYNNNNRTG	1 cut(s)	464
SaqAI	TTAA	2 cut(s)	693, 819
SatI	GCNGC	7 cut(s)	282, 406, 433, 489, 497, 553, 556
Sau3AI	GATC	3 cut(s)	667, 793, 919
SchI	GAGTC	3 cut(s)	714, 840, 995
ScrFI	CCNGG	3 cut(s)	230, 746, 872
SduI	GDGCHC	2 cut(s)	54, 476
SfaNI	GCATC	2 cut(s)	612, 757
SfcI	CTRYAG	1 cut(s)	433
SfoI	GGCGCC	1 cut(s)	280
SmiMI	CAYNNNNRTG	1 cut(s)	464
Sse9I	AATT	3 cut(s)	199, 238, 840
SsiI	CCGC	9 cut(s)	180, 282, 302, 348, 496, 499, 552, 555, 558
SspDI	GGCGCC	1 cut(s)	278
SspMI	CTAG	1 cut(s)	546
StyD4I	CCNGG	3 cut(s)	228, 744, 870
TaaI	ACNGT	8 cut(s)	359, 383, 523, 657, 754, 783, 880, 1018
TaiI	ACGT	4 cut(s)	208, 227, 468, 479
TasI	AATT	3 cut(s)	199, 238, 840
TauI	GCSGC	4 cut(s)	284, 499, 555, 558
TfiI	GAWTC	2 cut(s)	271, 305
Tru1I	TTAA	2 cut(s)	693, 819
Tru9I	TTAA	2 cut(s)	693, 819
TscAI	CASTG	6 cut(s)	154, 364, 715, 769, 841, 895
TseFI	GTSAC	4 cut(s)	517, 566, 706, 832
TseI	GCWGC	3 cut(s)	405, 432, 488
Tsp45I	GTSAC	4 cut(s)	517, 566, 706, 832
TspDTI	ATGAA	1 cut(s)	957
TspGWI	ACGGA	3 cut(s)	330, 342, 586
TspRI	CASTG	6 cut(s)	154, 364, 715, 769, 841, 895
VneI	GTGCAC	1 cut(s)	50
XapI	RAATTY	1 cut(s)	238
XceI	RCATGY	1 cut(s)	259
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1036
XmnI	GAANNNNTTC	1 cut(s)	580
XspI	CTAG	1 cut(s)	546
Zsp2I	ATGCAT	1 cut(s)	969

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.