Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002187

Physical Location & Seq

Genomic Coordinates Reverse (-)

57514496 .. 57517890

Gene Structure 3395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00325700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGCTCAGTTTTGGGAATCACGGCGGCGCCGAAAGTCAACAGGTGGTGGAATCCGACGACGGAAATGTGAACGGAGAAGGTGGTCGTGGTCGTGGTGGTGAAGACAGTGGCATGAGGGCTTGCAAGGACTGTGGGAACAGAGCCAAGAAAGGCTGCGAGTATTCAAGGTGCAGGACTTGTTGCAGAGGCAGGGGATATGACTGCTCCACTCACGTGAGGAGCACGTGGGTTCCGGCAGCGAGGCGGCGGGAAAGGCAGATGGGTGTGACCGTTGCTGTTGCTGGTGGTGTTGCTAGTGGCGGCGGCGGTGAAGGTTCTTCCGGTTCTTCTTCCGTTGCCAAAAGACCAAGAGTTATGATGCCATCAAAGAATGCAAATGCAAATCTCAGACAGTCATTACCAGATCAAGTTCGGGTACCAGCTGTTTTTAAGTGCCATAGAGTCACTGCCATTAGCAATGGTGAAGCTGAGATTGCTTACCAGGCTACTGTGAAAATCAGTGGTCATGTATTCAAGGGGTTGCTCTATGATCGTGGGGTTGATAAGAAGAATGAATACCCTTGTATTTCACATATGCATTTGGGAAGTGGTAGTAACCAAAGGAATGGAGACTCTTCTTCTCCAACTGTGCCTCCATCCAATGTCTGTGTGGCGTCCACCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF702

Protein Analysis

221

Amino Acids

23.24

Weight (kDa)

9.38

Isoelectric Point (pI)

44.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF702	PF05142	39 - 181	3.4e-56	Domain of unknown function (DUF702)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54430
fragaria_vesca	FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110
malus_domestica	MD02G1285800.v1.1
prunus_persica	Prupe.2G036500_v2.0.a1 Prupe.2G036500_v2.0.a1 Prupe.2G036500_v2.0.a1 Prupe.2G036500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0319531 RchiOBHm_Chr1g0324311
rosa_laevigata	RLG00000008631 RLG00000017375 RLG00000030203 RLG00000033698
rosa_multiflora	Rmu_sc0004082.1_g000006 Rmu_sc0004082.1_g000019 Rmu_sc0004082.1_g000020
rosa_roxburghii	Rroxscaffold_159G00432690 Rroxscaffold_159G00432760 Rroxscaffold_159G00432820 Rroxscaffold_4G00325640 Rroxscaffold_4G00325700
rosa_rugosa	Rorug01G0045000 Rorug01G0045100 Rorug01G0045200 Rorug01G0045300 Rorug01G0045400 Rorug01G0045500
rosa_samantha	Rh1AG061000 Rh1BG052100 Rh1CG063200 Rh1DG067600 Rh6AG126800 Rh6CG264300 Rh7CG487400
rosa_wichuraiana	Rw1G005190 Rw4G000540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	415
AccB1I	GGYRCC	2 cut(s)	26, 415
AciI	CCGC	6 cut(s)	24, 244, 247, 300, 303, 306
AcvI	CACGTG	2 cut(s)	214, 225
AcyI	GRCGYC	2 cut(s)	27, 653
AfaI	GTAC	1 cut(s)	417
AgsI	TTSAA	2 cut(s)	165, 514
AjnI	CCWGG	1 cut(s)	480
AleI	CACNNNNGTG	1 cut(s)	212
AluBI	AGCT	3 cut(s)	422, 467, 663
AluI	AGCT	3 cut(s)	422, 467, 663
Alw21I	GWGCWC	1 cut(s)	224
Alw26I	GTCTC	1 cut(s)	603
ApeKI	GCWGC	2 cut(s)	153, 236
Asp718I	GGTACC	1 cut(s)	415
AspLEI	GCGC	1 cut(s)	29
AsuHPI	GGTGA	3 cut(s)	110, 320, 473
BanI	GGYRCC	2 cut(s)	26, 415
BarI	GAAGNNNNNNTAC	2 cut(s)	539, 571
BbrPI	CACGTG	2 cut(s)	214, 225
BbsI	GAAGAC	1 cut(s)	108
Bbv12I	GWGCWC	1 cut(s)	224
BbvI	GCAGC	2 cut(s)	140, 248
BccI	CCATC	3 cut(s)	253, 370, 643
BceAI	ACGGC	1 cut(s)	37
BciT130I	CCWGG	1 cut(s)	482
BcoDI	GTCTC	1 cut(s)	603
BfaI	CTAG	1 cut(s)	294
BfoI	RGCGCY	1 cut(s)	30
BisI	GCNGC	6 cut(s)	25, 154, 237, 245, 301, 304
BlsI	GCNGC	6 cut(s)	26, 155, 238, 246, 302, 305
Bme1390I	CCNGG	1 cut(s)	482
BmiI	GGNNCC	3 cut(s)	28, 231, 417
BmrFI	CCNGG	1 cut(s)	482
BmsI	GCATC	1 cut(s)	348
BpiI	GAAGAC	1 cut(s)	108
BsaAI	YACGTR	2 cut(s)	214, 225
BsaHI	GRCGYC	2 cut(s)	27, 653
BsaWI	WCCGGW	1 cut(s)	320
BsaXI	ACNNNNNCTCC	2 cut(s)	616, 646
Bse3DI	GCAATG	1 cut(s)	463
BseBI	CCWGG	1 cut(s)	482
BseGI	GGATG	1 cut(s)	635
BseMI	GCAATG	1 cut(s)	463
BseMII	CTCAG	3 cut(s)	19, 400, 459
BseRI	GAGGAG	1 cut(s)	232
BseXI	GCAGC	2 cut(s)	140, 248
BsgI	GTGCAG	1 cut(s)	190
BshNI	GGYRCC	2 cut(s)	26, 415
BsiHKAI	GWGCWC	1 cut(s)	224
BsiSI	CCGG	2 cut(s)	233, 321
BsmAI	GTCTC	1 cut(s)	603
BsmI	GAATGC	1 cut(s)	376
Bsp1286I	GDGCHC	1 cut(s)	224
Bsp143I	GATC	2 cut(s)	403, 529
BspACI	CCGC	6 cut(s)	24, 244, 247, 300, 303, 306
BspCNI	CTCAG	3 cut(s)	18, 399, 460
BspLI	GGNNCC	3 cut(s)	28, 231, 417
BspT107I	GGYRCC	2 cut(s)	26, 415
BsrDI	GCAATG	1 cut(s)	463
BssMI	GATC	2 cut(s)	403, 529
BssNI	GRCGYC	2 cut(s)	27, 653
Bst2UI	CCWGG	1 cut(s)	482
Bst4CI	ACNGT	6 cut(s)	107, 131, 271, 393, 490, 628
Bst6I	CTCTTC	1 cut(s)	619
BstACI	GRCGYC	2 cut(s)	27, 653
BstBAI	YACGTR	2 cut(s)	214, 225
BstC8I	GCNNGC	1 cut(s)	121
BstDEI	CTNAG	3 cut(s)	5, 386, 468
BstF5I	GGATG	1 cut(s)	635
BstH2I	RGCGCY	1 cut(s)	30
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	2 cut(s)	406, 532
BstMAI	GTCTC	1 cut(s)	603
BstMBI	GATC	2 cut(s)	403, 529
BstMWI	GCNNNNNNNGC	3 cut(s)	253, 473, 482
BstNI	CCWGG	1 cut(s)	482
BstSCI	CCNGG	1 cut(s)	480
BstV1I	GCAGC	2 cut(s)	140, 248
BstV2I	GAAGAC	1 cut(s)	108
BstXI	CCANNNNNNTGG	1 cut(s)	605
BtsCI	GGATG	1 cut(s)	635
BtsI	GCAGTG	1 cut(s)	444
BtsIMutI	CAGTG	3 cut(s)	112, 444, 505
Cac8I	GCNNGC	1 cut(s)	121
CfoI	GCGC	1 cut(s)	29
CseI	GACGC	1 cut(s)	642
Csp6I	GTAC	1 cut(s)	416
CspCI	CAANNNNNGTGG	2 cut(s)	112, 147
CviAII	CATG	2 cut(s)	112, 506
CviJI	RGCY	7 cut(s)	119, 143, 153, 422, 467, 485, 663
CviKI_1	RGCY	7 cut(s)	119, 143, 153, 422, 467, 485, 663
CviQI	GTAC	1 cut(s)	416
DdeI	CTNAG	3 cut(s)	5, 386, 468
DinI	GGCGCC	1 cut(s)	28
DpnI	GATC	2 cut(s)	405, 531
DpnII	GATC	2 cut(s)	403, 529
Eam1104I	CTCTTC	1 cut(s)	619
EarI	CTCTTC	1 cut(s)	619
Eco72I	CACGTG	2 cut(s)	214, 225
EcoRII	CCWGG	1 cut(s)	480
EcoT22I	ATGCAT	1 cut(s)	579
EgeI	GGCGCC	1 cut(s)	28
EheI	GGCGCC	1 cut(s)	28
FaeI	CATG	2 cut(s)	115, 509
FaiI	YATR	8 cut(s)	113, 198, 356, 438, 507, 528, 573, 575
FatI	CATG	2 cut(s)	111, 505
FauI	CCCGC	1 cut(s)	240
FauNDI	CATATG	1 cut(s)	573
Fnu4HI	GCNGC	6 cut(s)	25, 154, 237, 245, 301, 304
FokI	GGATG	1 cut(s)	622
Fsp4HI	GCNGC	6 cut(s)	25, 154, 237, 245, 301, 304
FspBI	CTAG	1 cut(s)	294
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	6 cut(s)	25, 154, 237, 245, 301, 304
HaeII	RGCGCY	1 cut(s)	30
HapII	CCGG	2 cut(s)	233, 321
HgaI	GACGC	1 cut(s)	642
HhaI	GCGC	1 cut(s)	29
Hin1I	GRCGYC	2 cut(s)	27, 653
Hin1II	CATG	2 cut(s)	115, 509
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HincII	GTYRAC	1 cut(s)	38
HindII	GTYRAC	1 cut(s)	38
HinfI	GANTC	4 cut(s)	16, 50, 441, 611
HpaII	CCGG	2 cut(s)	233, 321
HphI	GGTGA	3 cut(s)	110, 320, 473
Hpy166II	GTNNAC	3 cut(s)	38, 70, 657
Hpy188I	TCNGA	2 cut(s)	55, 389
Hpy8I	GTNNAC	3 cut(s)	38, 70, 657
Hpy99I	CGWCG	2 cut(s)	59, 62
HpyAV	CCTTC	2 cut(s)	71, 305
HpyCH4III	ACNGT	6 cut(s)	107, 131, 271, 393, 490, 628
HpyCH4IV	ACGT	2 cut(s)	213, 224
HpyCH4V	TGCA	6 cut(s)	123, 171, 183, 374, 380, 577
HpyF10VI	GCNNNNNNNGC	3 cut(s)	253, 473, 482
HpyF3I	CTNAG	3 cut(s)	5, 386, 468
HpySE526I	ACGT	2 cut(s)	213, 224
Hsp92I	GRCGYC	2 cut(s)	27, 653
Hsp92II	CATG	2 cut(s)	115, 509
HspAI	GCGC	1 cut(s)	27
KasI	GGCGCC	1 cut(s)	26
KpnI	GGTACC	1 cut(s)	419
Kzo9I	GATC	2 cut(s)	403, 529
LmnI	GCTCC	2 cut(s)	209, 219
Lsp1109I	GCAGC	2 cut(s)	140, 248
LweI	GCATC	1 cut(s)	348
MaeI	CTAG	1 cut(s)	294
MaeII	ACGT	2 cut(s)	213, 224
MaeIII	GTNAC	3 cut(s)	265, 442, 593
MalI	GATC	2 cut(s)	405, 531
MboI	GATC	2 cut(s)	403, 529
MboII	GAAGA	7 cut(s)	113, 309, 318, 321, 559, 606, 609
MhlI	GDGCHC	1 cut(s)	224
Mly113I	GGCGCC	1 cut(s)	27
MlyI	GAGTC	2 cut(s)	450, 605
MmeI	TCCRAC	2 cut(s)	78, 647
MnlI	CCTC	5 cut(s)	108, 179, 210, 234, 642
Mph1103I	ATGCAT	1 cut(s)	579
MseI	TTAA	1 cut(s)	429
MslI	CAYNNNNRTG	1 cut(s)	212
MspA1I	CMGCKG	2 cut(s)	422, 663
MspI	CCGG	2 cut(s)	233, 321
MspR9I	CCNGG	1 cut(s)	482
Mva1269I	GAATGC	1 cut(s)	376
MvaI	CCWGG	1 cut(s)	482
MwoI	GCNNNNNNNGC	3 cut(s)	253, 473, 482
NarI	GGCGCC	1 cut(s)	27
NdeI	CATATG	1 cut(s)	573
NdeII	GATC	2 cut(s)	403, 529
NlaIII	CATG	2 cut(s)	115, 509
NlaIV	GGNNCC	3 cut(s)	28, 231, 417
NmuCI	GTSAC	2 cut(s)	265, 442
NsiI	ATGCAT	1 cut(s)	579
OliI	CACNNNNGTG	1 cut(s)	212
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PctI	GAATGC	1 cut(s)	376
PfeI	GAWTC	2 cut(s)	16, 50
PkrI	GCNGC	6 cut(s)	26, 155, 238, 246, 302, 305
PleI	GAGTC	2 cut(s)	449, 605
PluTI	GGCGCC	1 cut(s)	30
PmaCI	CACGTG	2 cut(s)	214, 225
PmlI	CACGTG	2 cut(s)	214, 225
PpsI	GAGTC	2 cut(s)	449, 605
Ppu21I	YACGTR	2 cut(s)	214, 225
Psp6I	CCWGG	1 cut(s)	480
PspCI	CACGTG	2 cut(s)	214, 225
PspGI	CCWGG	1 cut(s)	480
PspN4I	GGNNCC	3 cut(s)	28, 231, 417
PvuII	CAGCTG	2 cut(s)	422, 663
RsaI	GTAC	1 cut(s)	417
RsaNI	GTAC	1 cut(s)	416
RseI	CAYNNNNRTG	1 cut(s)	212
SaqAI	TTAA	1 cut(s)	429
SatI	GCNGC	6 cut(s)	25, 154, 237, 245, 301, 304
Sau3AI	GATC	2 cut(s)	403, 529
SchI	GAGTC	2 cut(s)	450, 605
ScrFI	CCNGG	1 cut(s)	482
SduI	GDGCHC	1 cut(s)	224
SetI	ASST	9 cut(s)	45, 82, 170, 216, 227, 316, 424, 469, 665
SfaNI	GCATC	1 cut(s)	348
SfoI	GGCGCC	1 cut(s)	28
SmiMI	CAYNNNNRTG	1 cut(s)	212
SsiI	CCGC	6 cut(s)	24, 244, 247, 300, 303, 306
SspDI	GGCGCC	1 cut(s)	26
SspMI	CTAG	1 cut(s)	294
StyD4I	CCNGG	1 cut(s)	480
TaaI	ACNGT	6 cut(s)	107, 131, 271, 393, 490, 628
TaiI	ACGT	2 cut(s)	216, 227
TauI	GCSGC	4 cut(s)	27, 247, 303, 306
TfiI	GAWTC	2 cut(s)	16, 50
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TscAI	CASTG	3 cut(s)	112, 451, 505
TseFI	GTSAC	2 cut(s)	265, 442
TseI	GCWGC	2 cut(s)	153, 236
Tsp45I	GTSAC	2 cut(s)	265, 442
TspDTI	ATGAA	1 cut(s)	567
TspGWI	ACGGA	3 cut(s)	75, 87, 322
TspRI	CASTG	3 cut(s)	112, 451, 505
XcmI	CCANNNNNNNNNTGG	1 cut(s)	646
XspI	CTAG	1 cut(s)	294
Zsp2I	ATGCAT	1 cut(s)	579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.