Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002187

Physical Location & Seq

Genomic Coordinates Reverse (-)

31049862 .. 31050689

Gene Structure 828 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033698

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGCTCTCTCTCTCTAGAAGCTCTCTCCTAGGGTTTCTTGGCGGCGGTAACAATTTGATTCCTTTGACTCGAACGGGTGGCTACCCTCCCTCTCTGGTCTCTGATGAAGGTGGTCTCAATGCTGTTGTGCGTTGGATCCTCTTGGCAATGGGAGGTCTCGGCTTCCTTCTTCTTGTTTCTGGAGCTCGGTGCTCCTCTGAGTCTCCGGCAATGGGTTATGGTGGCCTTCCTCCGGCTTGGAGTGTTGTGGGTCGAGATGTAGCATGGTTTATGGAGCGCTCTGGTGCGATTAGGGTCAAGGTCATTGGAAGCGGCATGTCTGCTCCCAGCGGCGGCGGTATTTTTCTGAGTGGTGACCACGGCGGTGGTAGGCATGACGGAGGCGACGACGGCATGCAAGGCCTTGTGAGCGTCTCTATGGTTCCGGCGACGTCGGAAGGTACGGCCATTGATGGCAATAGGTTTGAAGTGGATCAAGGGCTGGTTCTGGATCATTGGCTTGTTGGTGCTTGGGCTCGGACATTGGTTCAATATTGGTCTTTTGGGCCTCGAGTTTTTATTTTCATTTTTTACTTGCTCATTGAGCCCGGAGAAGCCCCCTTTGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

203

Amino Acids

21.1

Weight (kDa)

5.26

Isoelectric Point (pI)

42.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54430
fragaria_vesca	FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110
malus_domestica	MD02G1285800.v1.1
prunus_persica	Prupe.2G036500_v2.0.a1 Prupe.2G036500_v2.0.a1 Prupe.2G036500_v2.0.a1 Prupe.2G036500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0319531 RchiOBHm_Chr1g0324311
rosa_laevigata	RLG00000008631 RLG00000017375 RLG00000030203 RLG00000033698
rosa_multiflora	Rmu_sc0004082.1_g000006 Rmu_sc0004082.1_g000019 Rmu_sc0004082.1_g000020
rosa_roxburghii	Rroxscaffold_159G00432690 Rroxscaffold_159G00432760 Rroxscaffold_159G00432820 Rroxscaffold_4G00325640 Rroxscaffold_4G00325700
rosa_rugosa	Rorug01G0045000 Rorug01G0045100 Rorug01G0045200 Rorug01G0045300 Rorug01G0045400 Rorug01G0045500
rosa_samantha	Rh1AG061000 Rh1BG052100 Rh1CG063200 Rh1DG067600 Rh6AG126800 Rh6CG264300 Rh7CG487400
rosa_wichuraiana	Rw1G005190 Rw4G000540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	434
AciI	CCGC	7 cut(s)	42, 45, 312, 330, 333, 336, 363
AclWI	GGATC	4 cut(s)	130, 143, 480, 498
AcoI	YGGCCR	1 cut(s)	444
AcyI	GRCGYC	1 cut(s)	431
AfaI	GTAC	1 cut(s)	442
AfeI	AGCGCT	1 cut(s)	278
AfiI	CCNNNNNNNGG	3 cut(s)	212, 232, 332
AgsI	TTSAA	2 cut(s)	467, 530
AleI	CACNNNNGTG	1 cut(s)	363
AluBI	AGCT	2 cut(s)	21, 185
AluI	AGCT	2 cut(s)	21, 185
Alw21I	GWGCWC	2 cut(s)	187, 194
Alw26I	GTCTC	5 cut(s)	103, 119, 161, 207, 418
AlwI	GGATC	4 cut(s)	130, 143, 480, 498
Ama87I	CYCGRG	1 cut(s)	549
Aor51HI	AGCGCT	1 cut(s)	278
AoxI	GGCC	4 cut(s)	223, 400, 444, 545
AspA2I	CCTAGG	1 cut(s)	28
AspLEI	GCGC	1 cut(s)	279
AspS9I	GGNCC	1 cut(s)	545
AsuC2I	CCSGG	1 cut(s)	588
AsuHPI	GGTGA	1 cut(s)	365
AvaI	CYCGRG	1 cut(s)	549
AvrII	CCTAGG	1 cut(s)	28
BamHI	GGATCC	1 cut(s)	135
BanII	GRGCYC	3 cut(s)	187, 517, 588
Bbv12I	GWGCWC	2 cut(s)	187, 194
BccI	CCATC	1 cut(s)	446
BceAI	ACGGC	3 cut(s)	376, 406, 459
BcnI	CCSGG	1 cut(s)	588
BcoDI	GTCTC	5 cut(s)	103, 119, 161, 207, 418
BfaI	CTAG	2 cut(s)	15, 29
BfoI	RGCGCY	1 cut(s)	280
BisI	GCNGC	4 cut(s)	43, 313, 331, 334
BlnI	CCTAGG	1 cut(s)	28
BlsI	GCNGC	4 cut(s)	44, 314, 332, 335
Bme1390I	CCNGG	1 cut(s)	588
BmeT110I	CYCGRG	1 cut(s)	549
BmgT120I	GGNCC	1 cut(s)	545
BmiI	GGNNCC	2 cut(s)	137, 423
BmrFI	CCNGG	1 cut(s)	588
BpmI	CTGGAG	1 cut(s)	201
BpuMI	CCSGG	1 cut(s)	588
BsaHI	GRCGYC	1 cut(s)	431
BsaI	GGTCTC	3 cut(s)	103, 119, 161
BsaJI	CCNNGG	2 cut(s)	28, 358
Bsc4I	CCNNNNNNNGG	3 cut(s)	212, 232, 332
Bse3DI	GCAATG	2 cut(s)	153, 216
BseDI	CCNNGG	2 cut(s)	28, 358
BseLI	CCNNNNNNNGG	3 cut(s)	212, 232, 332
BseMI	GCAATG	2 cut(s)	153, 216
BseMII	CTCAG	2 cut(s)	189, 338
BseRI	GAGGAG	1 cut(s)	184
BseYI	CCCAGC	1 cut(s)	326
BshFI	GGCC	4 cut(s)	225, 402, 446, 547
BsiHKAI	GWGCWC	2 cut(s)	187, 194
BsiHKCI	CYCGRG	1 cut(s)	549
BsiSI	CCGG	4 cut(s)	206, 233, 425, 588
BslI	CCNNNNNNNGG	3 cut(s)	212, 232, 332
BsmAI	GTCTC	5 cut(s)	103, 119, 161, 207, 418
BsmBI	CGTCTC	1 cut(s)	418
BsnI	GGCC	4 cut(s)	225, 402, 446, 547
Bso31I	GGTCTC	3 cut(s)	103, 119, 161
BsoBI	CYCGRG	1 cut(s)	549
Bsp1286I	GDGCHC	4 cut(s)	187, 194, 517, 588
Bsp143I	GATC	3 cut(s)	135, 472, 490
BspACI	CCGC	7 cut(s)	42, 45, 312, 330, 333, 336, 363
BspANI	GGCC	4 cut(s)	225, 402, 446, 547
BspCNI	CTCAG	2 cut(s)	190, 339
BspLI	GGNNCC	2 cut(s)	137, 423
BspPI	GGATC	4 cut(s)	130, 143, 480, 498
BspTNI	GGTCTC	3 cut(s)	103, 119, 161
BsrDI	GCAATG	2 cut(s)	153, 216
BssECI	CCNNGG	2 cut(s)	28, 358
BssMI	GATC	3 cut(s)	135, 472, 490
BssNI	GRCGYC	1 cut(s)	431
BssT1I	CCWWGG	1 cut(s)	28
BstACI	GRCGYC	1 cut(s)	431
BstC8I	GCNNGC	1 cut(s)	395
BstDEI	CTNAG	2 cut(s)	198, 347
BstDSI	CCRYGG	1 cut(s)	358
BstEII	GGTNACC	1 cut(s)	353
BstH2I	RGCGCY	1 cut(s)	280
BstHHI	GCGC	1 cut(s)	279
BstKTI	GATC	3 cut(s)	138, 475, 493
BstMAI	GTCTC	5 cut(s)	103, 119, 161, 207, 418
BstMBI	GATC	3 cut(s)	135, 472, 490
BstMWI	GCNNNNNNNGC	5 cut(s)	390, 399, 408, 583, 602
BstNSI	RCATGY	2 cut(s)	319, 397
BstPI	GGTNACC	1 cut(s)	353
BstSCI	CCNGG	1 cut(s)	586
BstX2I	RGATCY	1 cut(s)	135
BstXI	CCANNNNNNTGG	1 cut(s)	365
BstYI	RGATCY	1 cut(s)	135
BsuRI	GGCC	4 cut(s)	225, 402, 446, 547
BtgI	CCRYGG	1 cut(s)	358
Cac8I	GCNNGC	1 cut(s)	395
CfoI	GCGC	1 cut(s)	279
Cfr13I	GGNCC	1 cut(s)	545
CseI	GACGC	1 cut(s)	400
Csp6I	GTAC	1 cut(s)	441
CviAII	CATG	4 cut(s)	264, 316, 374, 394
CviQI	GTAC	1 cut(s)	441
DdeI	CTNAG	2 cut(s)	198, 347
DpnI	GATC	3 cut(s)	137, 474, 492
DpnII	GATC	3 cut(s)	135, 472, 490
EaeI	YGGCCR	1 cut(s)	444
Ecl136II	GAGCTC	1 cut(s)	185
Eco130I	CCWWGG	1 cut(s)	28
Eco147I	AGGCCT	1 cut(s)	402
Eco24I	GRGCYC	3 cut(s)	187, 517, 588
Eco31I	GGTCTC	3 cut(s)	103, 119, 161
Eco47III	AGCGCT	1 cut(s)	278
Eco53kI	GAGCTC	1 cut(s)	185
Eco88I	CYCGRG	1 cut(s)	549
Eco91I	GGTNACC	1 cut(s)	353
EcoICRI	GAGCTC	1 cut(s)	185
EcoO65I	GGTNACC	1 cut(s)	353
EcoT14I	CCWWGG	1 cut(s)	28
EcoT38I	GRGCYC	3 cut(s)	187, 517, 588
ErhI	CCWWGG	1 cut(s)	28
Esp3I	CGTCTC	1 cut(s)	418
FaeI	CATG	4 cut(s)	267, 319, 377, 397
FaiI	YATR	7 cut(s)	219, 265, 272, 317, 375, 395, 419
FatI	CATG	4 cut(s)	263, 315, 373, 393
Fnu4HI	GCNGC	4 cut(s)	43, 313, 331, 334
FriOI	GRGCYC	3 cut(s)	187, 517, 588
Fsp4HI	GCNGC	4 cut(s)	43, 313, 331, 334
FspBI	CTAG	2 cut(s)	15, 29
GlaI	GCGC	1 cut(s)	278
GluI	GCNGC	4 cut(s)	43, 313, 331, 334
GsaI	CCCAGC	1 cut(s)	330
GsuI	CTGGAG	1 cut(s)	201
HaeII	RGCGCY	1 cut(s)	280
HaeIII	GGCC	4 cut(s)	225, 402, 446, 547
HapII	CCGG	4 cut(s)	206, 233, 425, 588
HgaI	GACGC	1 cut(s)	400
HhaI	GCGC	1 cut(s)	279
Hin1I	GRCGYC	1 cut(s)	431
Hin1II	CATG	4 cut(s)	267, 319, 377, 397
Hin6I	GCGC	1 cut(s)	277
HinP1I	GCGC	1 cut(s)	277
HinfI	GANTC	3 cut(s)	58, 67, 200
HpaII	CCGG	4 cut(s)	206, 233, 425, 588
HphI	GGTGA	1 cut(s)	365
Hpy188I	TCNGA	5 cut(s)	103, 199, 348, 436, 519
Hpy188III	TCNNGA	4 cut(s)	15, 180, 254, 488
Hpy99I	CGWCG	4 cut(s)	389, 392, 433, 436
HpyAV	CCTTC	4 cut(s)	101, 176, 236, 431
HpyCH4IV	ACGT	1 cut(s)	431
HpyCH4V	TGCA	1 cut(s)	397
HpyF10VI	GCNNNNNNNGC	5 cut(s)	390, 399, 408, 583, 602
HpyF3I	CTNAG	2 cut(s)	198, 347
HpySE526I	ACGT	1 cut(s)	431
Hsp92I	GRCGYC	1 cut(s)	431
Hsp92II	CATG	4 cut(s)	267, 319, 377, 397
HspAI	GCGC	1 cut(s)	277
Kzo9I	GATC	3 cut(s)	135, 472, 490
LmnI	GCTCC	4 cut(s)	182, 197, 274, 328
MaeI	CTAG	2 cut(s)	15, 29
MaeII	ACGT	1 cut(s)	431
MaeIII	GTNAC	2 cut(s)	47, 353
MalI	GATC	3 cut(s)	137, 474, 492
MboI	GATC	3 cut(s)	135, 472, 490
MboII	GAAGA	1 cut(s)	161
MflI	RGATCY	1 cut(s)	135
MhlI	GDGCHC	4 cut(s)	187, 194, 517, 588
MluCI	AATT	1 cut(s)	52
MlyI	GAGTC	2 cut(s)	61, 209
MmeI	TCCRAC	2 cut(s)	113, 414
MnlI	CCTC	8 cut(s)	96, 100, 146, 149, 205, 240, 374, 558
MslI	CAYNNNNRTG	1 cut(s)	363
MspA1I	CMGCKG	1 cut(s)	330
MspI	CCGG	4 cut(s)	206, 233, 425, 588
MspR9I	CCNGG	1 cut(s)	588
MwoI	GCNNNNNNNGC	5 cut(s)	390, 399, 408, 583, 602
NciI	CCSGG	1 cut(s)	588
NdeII	GATC	3 cut(s)	135, 472, 490
NlaIII	CATG	4 cut(s)	267, 319, 377, 397
NlaIV	GGNNCC	2 cut(s)	137, 423
NmeAIII	GCCGAG	1 cut(s)	138
NmuCI	GTSAC	1 cut(s)	353
NspI	RCATGY	2 cut(s)	319, 397
OliI	CACNNNNGTG	1 cut(s)	363
PaeI	GCATGC	1 cut(s)	397
PaeR7I	CTCGAG	1 cut(s)	549
PceI	AGGCCT	1 cut(s)	402
PcsI	WCGNNNNNNNCGW	1 cut(s)	384
PfeI	GAWTC	1 cut(s)	58
PkrI	GCNGC	4 cut(s)	44, 314, 332, 335
PleI	GAGTC	2 cut(s)	61, 208
PpsI	GAGTC	2 cut(s)	61, 208
Psp124BI	GAGCTC	1 cut(s)	187
PspEI	GGTNACC	1 cut(s)	353
PspFI	CCCAGC	1 cut(s)	326
PspN4I	GGNNCC	2 cut(s)	137, 423
PspPI	GGNCC	1 cut(s)	545
PspXI	VCTCGAGB	1 cut(s)	549
PsuI	RGATCY	1 cut(s)	135
RsaI	GTAC	1 cut(s)	442
RsaNI	GTAC	1 cut(s)	441
RseI	CAYNNNNRTG	1 cut(s)	363
SacI	GAGCTC	1 cut(s)	187
SatI	GCNGC	4 cut(s)	43, 313, 331, 334
Sau3AI	GATC	3 cut(s)	135, 472, 490
Sau96I	GGNCC	1 cut(s)	545
SchI	GAGTC	2 cut(s)	61, 209
ScrFI	CCNGG	1 cut(s)	588
SduI	GDGCHC	4 cut(s)	187, 194, 517, 588
SetI	ASST	8 cut(s)	23, 112, 157, 187, 303, 434, 442, 464
Sfr274I	CTCGAG	1 cut(s)	549
SlaI	CTCGAG	1 cut(s)	549
SmiMI	CAYNNNNRTG	1 cut(s)	363
SmlI	CTYRAG	1 cut(s)	549
SmoI	CTYRAG	1 cut(s)	549
SphI	GCATGC	1 cut(s)	397
Sse9I	AATT	1 cut(s)	52
SseBI	AGGCCT	1 cut(s)	402
SsiI	CCGC	7 cut(s)	42, 45, 312, 330, 333, 336, 363
SspI	AATATT	1 cut(s)	533
SspMI	CTAG	2 cut(s)	15, 29
SstI	GAGCTC	1 cut(s)	187
StuI	AGGCCT	1 cut(s)	402
StyD4I	CCNGG	1 cut(s)	586
StyI	CCWWGG	1 cut(s)	28
TaiI	ACGT	1 cut(s)	434
TaqI	TCGA	3 cut(s)	70, 253, 550
TasI	AATT	1 cut(s)	52
TauI	GCSGC	4 cut(s)	45, 315, 333, 336
TfiI	GAWTC	1 cut(s)	58
TseFI	GTSAC	1 cut(s)	353
Tsp45I	GTSAC	1 cut(s)	353
TspDTI	ATGAA	2 cut(s)	120, 553
TspGWI	ACGGA	1 cut(s)	393
XbaI	TCTAGA	1 cut(s)	14
XceI	RCATGY	2 cut(s)	319, 397
XhoI	CTCGAG	1 cut(s)	549
XmaJI	CCTAGG	1 cut(s)	28
XspI	CTAG	2 cut(s)	15, 29
ZraI	GACGTC	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.