Rh1CG063200

Protein LATERAL ROOT PRIMORDIUM

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0002187
Physical Location & Seq
Forward (+)
12519269 .. 12523776
4508 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG063200.1

Sequence Viewer

Length: 720 bp
ATGTTGGGTCTGAGAGATATCCTCCTGATTGCTCCAAACCATTCTTCTGTGCACCAACAAAACCAACCCATTTCCTCTGACCACCCAGCTCTCCCTCTTCCTTCCTCCACAGCTCTTGGGGTTGGCCTCGGTATTTTCCCTCTCCTCACTGCAACCCCATGTGGCCAAAATGCTCCGACCGCCGAGGGCAATCCGGACAATTCACGTTTCTGGAGCCTGAGAACGTACCCGGAGCTGAATTCTTCCAAGCAAGACATGCTCAGTTTTGGGAATCACGGCGCCGCCGAAAGTCAACAGGTGGCGGAATCCGATGACGGAAATGTGAACGGAGAAGGTGGTGGTCGTGGCGGTGAAGACAGTGGCATGAGGGCTTGCAAGGACTGTGGGAACAGAGCCAAGAAAGGCTGCGAGTATTCGAGGTGCAGGACTTGTTGCAGAGGCAGGGGATATGACTGCTCCACTCACGTGAGGAGCACGTGGGTTCCGGCAGCGAGGCGGCGGGAAAGGCAGATGGGGGTGACCGTTGCTGTTGCTGGTGGTGTTGCTAGTGGCGGCGGCGGTGAAGGTTCTTCCGGTTCTTCTTCCGTTGCCAAAAGACCAAGAGTAATGATGCCATCAAAGAATGCAAGTACAGCCTCTAGTCTGTCACCAAGCTGCTCTCGTATTTTGTTCAGTAGAATTGGACCAAATTGGTTTTCGATTTTTCTGTTTTGGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF702

Protein Analysis

239

Amino Acids

25.22

Weight (kDa)

9.02

Isoelectric Point (pI)

51.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF702 PF05142 123 - 214 5e-31 Domain of unknown function (DUF702)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 278
AccIII TCCGGA 1 cut(s) 193
AciI CCGC 9 cut(s) 180, 282, 302, 348, 496, 499, 552, 555, 558
AcoI YGGCCR 1 cut(s) 163
AcsI RAATTY 1 cut(s) 238
AcvI CACGTG 2 cut(s) 466, 477
AcyI GRCGYC 1 cut(s) 279
AfaI GTAC 2 cut(s) 227, 631
AjuI GAANNNNNNNTTGG 4 cut(s) 28, 60, 679, 711
AleI CACNNNNGTG 1 cut(s) 464
AluBI AGCT 4 cut(s) 89, 113, 235, 654
AluI AGCT 4 cut(s) 89, 113, 235, 654
Alw21I GWGCWC 2 cut(s) 54, 476
Alw44I GTGCAC 1 cut(s) 50
Aor13HI TCCGGA 1 cut(s) 193
AoxI GGCC 2 cut(s) 124, 163
ApaLI GTGCAC 1 cut(s) 50
ApeKI GCWGC 3 cut(s) 405, 488, 654
ApoI RAATTY 1 cut(s) 238
AspLEI GCGC 1 cut(s) 281
AspS9I GGNCC 1 cut(s) 683
AsuC2I CCSGG 1 cut(s) 230
AsuHPI GGTGA 4 cut(s) 362, 529, 572, 639
AvaII GGWCC 1 cut(s) 683
BaeGI GKGCMC 1 cut(s) 54
BalI TGGCCA 1 cut(s) 165
BanI GGYRCC 1 cut(s) 278
BbrPI CACGTG 2 cut(s) 466, 477
BbsI GAAGAC 1 cut(s) 360
Bbv12I GWGCWC 2 cut(s) 54, 476
BbvI GCAGC 3 cut(s) 392, 500, 641
BccI CCATC 2 cut(s) 505, 622
BceAI ACGGC 1 cut(s) 292
BcnI CCSGG 1 cut(s) 230
BfaI CTAG 2 cut(s) 546, 639
BfoI RGCGCY 1 cut(s) 282
BisI GCNGC 7 cut(s) 282, 406, 489, 497, 553, 556, 655
BlsI GCNGC 7 cut(s) 283, 407, 490, 498, 554, 557, 656
Bme1390I CCNGG 1 cut(s) 230
Bme18I GGWCC 1 cut(s) 683
BmgT120I GGNCC 1 cut(s) 683
BmiI GGNNCC 3 cut(s) 215, 280, 483
BmrFI CCNGG 1 cut(s) 230
BmsI GCATC 1 cut(s) 600
BpiI GAAGAC 1 cut(s) 360
BplI GAGNNNNNCTC 1 cut(s) 38
BpmI CTGGAG 1 cut(s) 232
BpuMI CCSGG 1 cut(s) 230
BsaAI YACGTR 2 cut(s) 466, 477
BsaHI GRCGYC 1 cut(s) 279
BsaJI CCNNGG 2 cut(s) 127, 183
BsaWI WCCGGW 2 cut(s) 193, 572
BseAI TCCGGA 1 cut(s) 193
BseDI CCNNGG 2 cut(s) 127, 183
BseMII CTCAG 2 cut(s) 209, 274
BseRI GAGGAG 2 cut(s) 134, 484
BseSI GKGCMC 1 cut(s) 54
BseXI GCAGC 3 cut(s) 392, 500, 641
BseYI CCCAGC 1 cut(s) 85
BsgI GTGCAG 1 cut(s) 442
Bsh1285I CGRYCG 1 cut(s) 180
BshFI GGCC 2 cut(s) 126, 165
BshNI GGYRCC 1 cut(s) 278
BsiEI CGRYCG 1 cut(s) 180
BsiHKAI GWGCWC 2 cut(s) 54, 476
BsiSI CCGG 4 cut(s) 194, 230, 485, 573
BsmI GAATGC 1 cut(s) 628
BsnI GGCC 2 cut(s) 126, 165
Bsp1286I GDGCHC 2 cut(s) 54, 476
Bsp13I TCCGGA 1 cut(s) 193
BspACI CCGC 9 cut(s) 180, 282, 302, 348, 496, 499, 552, 555, 558
BspANI GGCC 2 cut(s) 126, 165
BspCNI CTCAG 2 cut(s) 210, 273
BspEI TCCGGA 1 cut(s) 193
BspLI GGNNCC 3 cut(s) 215, 280, 483
BspT107I GGYRCC 1 cut(s) 278
BssECI CCNNGG 2 cut(s) 127, 183
BssNI GRCGYC 1 cut(s) 279
Bst4CI ACNGT 3 cut(s) 359, 383, 523
Bst6I CTCTTC 1 cut(s) 102
BstACI GRCGYC 1 cut(s) 279
BstAPI GCANNNNNTGC 1 cut(s) 256
BstBAI YACGTR 2 cut(s) 466, 477
BstC8I GCNNGC 1 cut(s) 373
BstDEI CTNAG 3 cut(s) 11, 218, 260
BstEII GGTNACC 1 cut(s) 517
BstH2I RGCGCY 1 cut(s) 282
BstHHI GCGC 1 cut(s) 281
BstMCI CGRYCG 1 cut(s) 180
BstMWI GCNNNNNNNGC 4 cut(s) 179, 256, 505, 632
BstNSI RCATGY 1 cut(s) 259
BstPI GGTNACC 1 cut(s) 517
BstSCI CCNGG 1 cut(s) 228
BstSLI GKGCMC 1 cut(s) 54
BstV1I GCAGC 3 cut(s) 392, 500, 641
BstV2I GAAGAC 1 cut(s) 360
BsuRI GGCC 2 cut(s) 126, 165
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 2 cut(s) 147, 364
Cac8I GCNNGC 1 cut(s) 373
CfoI GCGC 1 cut(s) 281
Cfr13I GGNCC 1 cut(s) 683
Csp6I GTAC 2 cut(s) 226, 630
CspCI CAANNNNNGTGG 4 cut(s) 97, 132, 364, 399
CviAII CATG 3 cut(s) 159, 256, 364
CviQI GTAC 2 cut(s) 226, 630
DdeI CTNAG 3 cut(s) 11, 218, 260
DinI GGCGCC 1 cut(s) 280
EaeI YGGCCR 1 cut(s) 163
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
EciI GGCGGA 1 cut(s) 317
Eco32I GATATC 1 cut(s) 19
Eco47I GGWCC 1 cut(s) 683
Eco72I CACGTG 2 cut(s) 466, 477
Eco91I GGTNACC 1 cut(s) 517
EcoO65I GGTNACC 1 cut(s) 517
EcoRI GAATTC 1 cut(s) 238
EcoRV GATATC 1 cut(s) 19
EgeI GGCGCC 1 cut(s) 280
EheI GGCGCC 1 cut(s) 280
FaeI CATG 3 cut(s) 162, 259, 367
FaiI YATR 4 cut(s) 160, 257, 365, 450
FatI CATG 3 cut(s) 158, 255, 363
FauI CCCGC 1 cut(s) 492
Fnu4HI GCNGC 7 cut(s) 282, 406, 489, 497, 553, 556, 655
Fsp4HI GCNGC 7 cut(s) 282, 406, 489, 497, 553, 556, 655
FspBI CTAG 2 cut(s) 546, 639
GlaI GCGC 1 cut(s) 280
GluI GCNGC 7 cut(s) 282, 406, 489, 497, 553, 556, 655
GsaI CCCAGC 1 cut(s) 89
GsuI CTGGAG 1 cut(s) 232
HaeII RGCGCY 1 cut(s) 282
HaeIII GGCC 2 cut(s) 126, 165
HapII CCGG 4 cut(s) 194, 230, 485, 573
HhaI GCGC 1 cut(s) 281
Hin1I GRCGYC 1 cut(s) 279
Hin1II CATG 3 cut(s) 162, 259, 367
Hin6I GCGC 1 cut(s) 279
HinP1I GCGC 1 cut(s) 279
HincII GTYRAC 1 cut(s) 293
HindII GTYRAC 1 cut(s) 293
HinfI GANTC 2 cut(s) 271, 305
HpaII CCGG 4 cut(s) 194, 230, 485, 573
HphI GGTGA 4 cut(s) 362, 529, 572, 639
Hpy166II GTNNAC 3 cut(s) 52, 293, 325
Hpy188I TCNGA 4 cut(s) 12, 79, 177, 310
Hpy188III TCNNGA 3 cut(s) 25, 194, 211
Hpy8I GTNNAC 3 cut(s) 52, 293, 325
HpyAV CCTTC 3 cut(s) 111, 326, 557
HpyCH4III ACNGT 3 cut(s) 359, 383, 523
HpyCH4IV ACGT 4 cut(s) 205, 224, 465, 476
HpyCH4V TGCA 6 cut(s) 52, 152, 375, 423, 435, 626
HpyF10VI GCNNNNNNNGC 4 cut(s) 179, 256, 505, 632
HpyF3I CTNAG 3 cut(s) 11, 218, 260
HpySE526I ACGT 4 cut(s) 205, 224, 465, 476
Hsp92I GRCGYC 1 cut(s) 279
Hsp92II CATG 3 cut(s) 162, 259, 367
HspAI GCGC 1 cut(s) 279
KasI GGCGCC 1 cut(s) 278
Kpn2I TCCGGA 1 cut(s) 193
LmnI GCTCC 6 cut(s) 37, 178, 213, 232, 461, 471
Lsp1109I GCAGC 3 cut(s) 392, 500, 641
LweI GCATC 1 cut(s) 600
MaeI CTAG 2 cut(s) 546, 639
MaeII ACGT 4 cut(s) 205, 224, 465, 476
MaeIII GTNAC 2 cut(s) 517, 645
MboII GAAGA 7 cut(s) 36, 89, 234, 365, 561, 570, 573
MhlI GDGCHC 2 cut(s) 54, 476
MlsI TGGCCA 1 cut(s) 165
MluCI AATT 4 cut(s) 199, 238, 678, 688
MluNI TGGCCA 1 cut(s) 165
Mly113I GGCGCC 1 cut(s) 279
MmeI TCCRAC 1 cut(s) 200
Mox20I TGGCCA 1 cut(s) 165
MroI TCCGGA 1 cut(s) 193
MscI TGGCCA 1 cut(s) 165
MslI CAYNNNNRTG 1 cut(s) 464
Msp20I TGGCCA 1 cut(s) 165
MspI CCGG 4 cut(s) 194, 230, 485, 573
MspR9I CCNGG 1 cut(s) 230
Mva1269I GAATGC 1 cut(s) 628
MwoI GCNNNNNNNGC 4 cut(s) 179, 256, 505, 632
NarI GGCGCC 1 cut(s) 279
NciI CCSGG 1 cut(s) 230
NlaIII CATG 3 cut(s) 162, 259, 367
NlaIV GGNNCC 3 cut(s) 215, 280, 483
NmeAIII GCCGAG 1 cut(s) 208
NmuCI GTSAC 2 cut(s) 517, 645
NspI RCATGY 1 cut(s) 259
OliI CACNNNNGTG 1 cut(s) 464
PcsI WCGNNNNNNNCGW 1 cut(s) 282
PctI GAATGC 1 cut(s) 628
PfeI GAWTC 2 cut(s) 271, 305
PkrI GCNGC 7 cut(s) 283, 407, 490, 498, 554, 557, 656
PluTI GGCGCC 1 cut(s) 282
PmaCI CACGTG 2 cut(s) 466, 477
PmlI CACGTG 2 cut(s) 466, 477
Ppu21I YACGTR 2 cut(s) 466, 477
PspCI CACGTG 2 cut(s) 466, 477
PspEI GGTNACC 1 cut(s) 517
PspFI CCCAGC 1 cut(s) 85
PspN4I GGNNCC 3 cut(s) 215, 280, 483
PspPI GGNCC 1 cut(s) 683
RsaI GTAC 2 cut(s) 227, 631
RsaNI GTAC 2 cut(s) 226, 630
RseI CAYNNNNRTG 1 cut(s) 464
SatI GCNGC 7 cut(s) 282, 406, 489, 497, 553, 556, 655
Sau96I GGNCC 1 cut(s) 683
ScrFI CCNGG 1 cut(s) 230
SduI GDGCHC 2 cut(s) 54, 476
SfaNI GCATC 1 cut(s) 600
SfoI GGCGCC 1 cut(s) 280
SinI GGWCC 1 cut(s) 683
SmiMI CAYNNNNRTG 1 cut(s) 464
Sse9I AATT 4 cut(s) 199, 238, 678, 688
SsiI CCGC 9 cut(s) 180, 282, 302, 348, 496, 499, 552, 555, 558
SspDI GGCGCC 1 cut(s) 278
SspMI CTAG 2 cut(s) 546, 639
StyD4I CCNGG 1 cut(s) 228
TaaI ACNGT 3 cut(s) 359, 383, 523
TaiI ACGT 4 cut(s) 208, 227, 468, 479
TaqI TCGA 2 cut(s) 416, 698
TasI AATT 4 cut(s) 199, 238, 678, 688
TatI WGTACW 1 cut(s) 629
TauI GCSGC 4 cut(s) 284, 499, 555, 558
TfiI GAWTC 2 cut(s) 271, 305
TscAI CASTG 2 cut(s) 154, 364
TseFI GTSAC 2 cut(s) 517, 645
TseI GCWGC 3 cut(s) 405, 488, 654
Tsp45I GTSAC 2 cut(s) 517, 645
TspGWI ACGGA 3 cut(s) 330, 342, 574
TspRI CASTG 2 cut(s) 154, 364
VneI GTGCAC 1 cut(s) 50
VpaK11BI GGWCC 1 cut(s) 683
XapI RAATTY 1 cut(s) 238
XceI RCATGY 1 cut(s) 259
XspI CTAG 2 cut(s) 546, 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.