Rw1G005190

Protein LATERAL ROOT PRIMORDIUM

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0002187
Physical Location & Seq
Forward (+)
10050535 .. 10052015
1481 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G005190.1

Sequence Viewer

Length: 918 bp
ATGTTGGGTCTGAGAGATATCCTCCTGATTGCTCCAAACCATTCTTCTGTGCACCAACAAAACCAACCCATTTCCTCTGACCACCCAGCTCTCCCTCTTCCTTCCTCCACAGCTCTTGGGGTTGGCCTCGGTATTTTCCCTCTCCTCACTGCAACCCCATGTGGCCAAAATGCTCCGACCGCCGACGGCAATCCGGACAATTCACGTTTCTGGAGCCTGAGAACGTACCCGGAGCTGAATTCTTCCAAGCAAGACATGCTCAGTTTTGGGAATCACGGCGCCGCCGAAAGTCAACAGGTGGCGGAATCCGATGACGGAAATGTGAACGGAGAAGGTGGTGGTCGTGGCGGTGAAGACAGTGGCATGAGGGCTTGCAAGGACTGTGGGAACAGAGCCAAGAAAGGCTGCGAGTATTCAAGGTGCAGGACTTGCTGCAGAGGCAGGGGATATGACTGCTCCACTCACGTGAGGAGCACGTGGGTTCCGGCAGCGAGGCGGCGGGAAAGGCAGATGGGGGTGACCGTTGCTGTTGCTGGTGGTGTTGCTAGTGGCGGCGGCGGTGAAGGTTCTTCCGGTTCTTCTTCCGTTGCCAAAAGACCAAGAGTAATGATGCCATCAAAGAATGCAAATGCAACTCTCAGACAGTCATTACCAGATCAAGTTCGGGTACCAGCTGTTTTTAAGTGCCATAGAGTCACTGCCATTAGCAATGGTGAGGCCGAGATTGCTTACCAGGCTACTGTGAAAATCAGTGGTCATGTATTCAAGGGGTTGCTCTATGATCGTGGGGTTGATAAGAAGAATGAATACCCTTGTATTTCACATATGCATTTGGGAAGTGGTAGTAACCAAAGGAATGGAGACTCTTCTTCTCCAACTGTGCCTCCATCCAATGTCTGTGTGGCGTCCACCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF702

Protein Analysis

305

Amino Acids

32.1

Weight (kDa)

8.99

Isoelectric Point (pI)

46.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF702 PF05142 123 - 265 6.9e-56 Domain of unknown function (DUF702)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 667
AccB1I GGYRCC 2 cut(s) 278, 667
AccIII TCCGGA 1 cut(s) 193
AciI CCGC 9 cut(s) 180, 282, 302, 348, 496, 499, 552, 555, 558
AcoI YGGCCR 1 cut(s) 163
AcsI RAATTY 1 cut(s) 238
AcvI CACGTG 2 cut(s) 466, 477
AcyI GRCGYC 2 cut(s) 279, 905
AfaI GTAC 2 cut(s) 227, 669
AgsI TTSAA 2 cut(s) 417, 766
AjnI CCWGG 1 cut(s) 732
AjuI GAANNNNNNNTTGG 2 cut(s) 28, 60
AleI CACNNNNGTG 1 cut(s) 464
AluBI AGCT 5 cut(s) 89, 113, 235, 674, 915
AluI AGCT 5 cut(s) 89, 113, 235, 674, 915
Alw21I GWGCWC 2 cut(s) 54, 476
Alw26I GTCTC 1 cut(s) 855
Alw44I GTGCAC 1 cut(s) 50
Aor13HI TCCGGA 1 cut(s) 193
AoxI GGCC 3 cut(s) 124, 163, 717
ApaLI GTGCAC 1 cut(s) 50
ApeKI GCWGC 3 cut(s) 405, 432, 488
ApoI RAATTY 1 cut(s) 238
Asp718I GGTACC 1 cut(s) 667
AspLEI GCGC 1 cut(s) 281
AsuC2I CCSGG 1 cut(s) 230
AsuHPI GGTGA 4 cut(s) 362, 529, 572, 725
BaeGI GKGCMC 1 cut(s) 54
BalI TGGCCA 1 cut(s) 165
BanI GGYRCC 2 cut(s) 278, 667
BarI GAAGNNNNNNTAC 2 cut(s) 791, 823
BbrPI CACGTG 2 cut(s) 466, 477
BbsI GAAGAC 1 cut(s) 360
Bbv12I GWGCWC 2 cut(s) 54, 476
BbvI GCAGC 3 cut(s) 392, 419, 500
BccI CCATC 3 cut(s) 505, 622, 895
BceAI ACGGC 2 cut(s) 202, 292
BciT130I CCWGG 1 cut(s) 734
BcnI CCSGG 1 cut(s) 230
BcoDI GTCTC 1 cut(s) 855
BfaI CTAG 1 cut(s) 546
BfmI CTRYAG 1 cut(s) 433
BfoI RGCGCY 1 cut(s) 282
BisI GCNGC 7 cut(s) 282, 406, 433, 489, 497, 553, 556
BlsI GCNGC 7 cut(s) 283, 407, 434, 490, 498, 554, 557
Bme1390I CCNGG 2 cut(s) 230, 734
BmiI GGNNCC 4 cut(s) 215, 280, 483, 669
BmrFI CCNGG 2 cut(s) 230, 734
BmsI GCATC 1 cut(s) 600
BpiI GAAGAC 1 cut(s) 360
BplI GAGNNNNNCTC 1 cut(s) 38
BpmI CTGGAG 1 cut(s) 232
BpuMI CCSGG 1 cut(s) 230
BsaAI YACGTR 2 cut(s) 466, 477
BsaHI GRCGYC 2 cut(s) 279, 905
BsaJI CCNNGG 1 cut(s) 127
BsaWI WCCGGW 2 cut(s) 193, 572
BsaXI ACNNNNNCTCC 2 cut(s) 868, 898
Bse3DI GCAATG 1 cut(s) 715
BseAI TCCGGA 1 cut(s) 193
BseBI CCWGG 1 cut(s) 734
BseDI CCNNGG 1 cut(s) 127
BseGI GGATG 1 cut(s) 887
BseMI GCAATG 1 cut(s) 715
BseMII CTCAG 3 cut(s) 209, 274, 652
BseRI GAGGAG 2 cut(s) 134, 484
BseSI GKGCMC 1 cut(s) 54
BseXI GCAGC 3 cut(s) 392, 419, 500
BseYI CCCAGC 1 cut(s) 85
BsgI GTGCAG 1 cut(s) 442
Bsh1285I CGRYCG 1 cut(s) 180
BshFI GGCC 3 cut(s) 126, 165, 719
BshNI GGYRCC 2 cut(s) 278, 667
BsiEI CGRYCG 1 cut(s) 180
BsiHKAI GWGCWC 2 cut(s) 54, 476
BsiSI CCGG 4 cut(s) 194, 230, 485, 573
BsmAI GTCTC 1 cut(s) 855
BsmI GAATGC 1 cut(s) 628
BsnI GGCC 3 cut(s) 126, 165, 719
Bsp1286I GDGCHC 2 cut(s) 54, 476
Bsp13I TCCGGA 1 cut(s) 193
Bsp143I GATC 2 cut(s) 655, 781
BspACI CCGC 9 cut(s) 180, 282, 302, 348, 496, 499, 552, 555, 558
BspANI GGCC 3 cut(s) 126, 165, 719
BspCNI CTCAG 3 cut(s) 210, 273, 651
BspEI TCCGGA 1 cut(s) 193
BspLI GGNNCC 4 cut(s) 215, 280, 483, 669
BspMAI CTGCAG 1 cut(s) 437
BspT107I GGYRCC 2 cut(s) 278, 667
BsrDI GCAATG 1 cut(s) 715
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 2 cut(s) 655, 781
BssNI GRCGYC 2 cut(s) 279, 905
Bst2UI CCWGG 1 cut(s) 734
Bst4CI ACNGT 6 cut(s) 359, 383, 523, 645, 742, 880
Bst6I CTCTTC 2 cut(s) 102, 871
BstACI GRCGYC 2 cut(s) 279, 905
BstAPI GCANNNNNTGC 2 cut(s) 256, 429
BstBAI YACGTR 2 cut(s) 466, 477
BstC8I GCNNGC 1 cut(s) 373
BstDEI CTNAG 4 cut(s) 11, 218, 260, 638
BstEII GGTNACC 1 cut(s) 517
BstF5I GGATG 1 cut(s) 887
BstH2I RGCGCY 1 cut(s) 282
BstHHI GCGC 1 cut(s) 281
BstKTI GATC 2 cut(s) 658, 784
BstMAI GTCTC 1 cut(s) 855
BstMBI GATC 2 cut(s) 655, 781
BstMCI CGRYCG 1 cut(s) 180
BstMWI GCNNNNNNNGC 7 cut(s) 179, 256, 429, 438, 505, 725, 734
BstNI CCWGG 1 cut(s) 734
BstNSI RCATGY 1 cut(s) 259
BstPI GGTNACC 1 cut(s) 517
BstSCI CCNGG 2 cut(s) 228, 732
BstSFI CTRYAG 1 cut(s) 433
BstSLI GKGCMC 1 cut(s) 54
BstV1I GCAGC 3 cut(s) 392, 419, 500
BstV2I GAAGAC 1 cut(s) 360
BstXI CCANNNNNNTGG 1 cut(s) 857
BsuRI GGCC 3 cut(s) 126, 165, 719
BtsCI GGATG 1 cut(s) 887
BtsI GCAGTG 2 cut(s) 147, 696
BtsIMutI CAGTG 4 cut(s) 147, 364, 696, 757
Cac8I GCNNGC 1 cut(s) 373
CfoI GCGC 1 cut(s) 281
CseI GACGC 1 cut(s) 894
Csp6I GTAC 2 cut(s) 226, 668
CspCI CAANNNNNGTGG 4 cut(s) 97, 132, 364, 399
CviAII CATG 4 cut(s) 159, 256, 364, 758
CviQI GTAC 2 cut(s) 226, 668
DdeI CTNAG 4 cut(s) 11, 218, 260, 638
DinI GGCGCC 1 cut(s) 280
DpnI GATC 2 cut(s) 657, 783
DpnII GATC 2 cut(s) 655, 781
EaeI YGGCCR 1 cut(s) 163
Eam1104I CTCTTC 2 cut(s) 102, 871
EarI CTCTTC 2 cut(s) 102, 871
EciI GGCGGA 1 cut(s) 317
Eco32I GATATC 1 cut(s) 19
Eco72I CACGTG 2 cut(s) 466, 477
Eco91I GGTNACC 1 cut(s) 517
EcoO65I GGTNACC 1 cut(s) 517
EcoRI GAATTC 1 cut(s) 238
EcoRII CCWGG 1 cut(s) 732
EcoRV GATATC 1 cut(s) 19
EcoT22I ATGCAT 1 cut(s) 831
EgeI GGCGCC 1 cut(s) 280
EheI GGCGCC 1 cut(s) 280
FaeI CATG 4 cut(s) 162, 259, 367, 761
FaiI YATR 9 cut(s) 160, 257, 365, 450, 690, 759, 780, 825, 827
FatI CATG 4 cut(s) 158, 255, 363, 757
FauI CCCGC 1 cut(s) 492
FauNDI CATATG 1 cut(s) 825
Fnu4HI GCNGC 7 cut(s) 282, 406, 433, 489, 497, 553, 556
FokI GGATG 1 cut(s) 874
Fsp4HI GCNGC 7 cut(s) 282, 406, 433, 489, 497, 553, 556
FspBI CTAG 1 cut(s) 546
GlaI GCGC 1 cut(s) 280
GluI GCNGC 7 cut(s) 282, 406, 433, 489, 497, 553, 556
GsaI CCCAGC 1 cut(s) 89
GsuI CTGGAG 1 cut(s) 232
HaeII RGCGCY 1 cut(s) 282
HaeIII GGCC 3 cut(s) 126, 165, 719
HapII CCGG 4 cut(s) 194, 230, 485, 573
HgaI GACGC 1 cut(s) 894
HhaI GCGC 1 cut(s) 281
Hin1I GRCGYC 2 cut(s) 279, 905
Hin1II CATG 4 cut(s) 162, 259, 367, 761
Hin6I GCGC 1 cut(s) 279
HinP1I GCGC 1 cut(s) 279
HincII GTYRAC 1 cut(s) 293
HindII GTYRAC 1 cut(s) 293
HinfI GANTC 4 cut(s) 271, 305, 693, 863
HpaII CCGG 4 cut(s) 194, 230, 485, 573
HphI GGTGA 4 cut(s) 362, 529, 572, 725
Hpy166II GTNNAC 4 cut(s) 52, 293, 325, 909
Hpy188I TCNGA 5 cut(s) 12, 79, 177, 310, 641
Hpy188III TCNNGA 3 cut(s) 25, 194, 211
Hpy8I GTNNAC 4 cut(s) 52, 293, 325, 909
Hpy99I CGWCG 1 cut(s) 188
HpyAV CCTTC 3 cut(s) 111, 326, 557
HpyCH4III ACNGT 6 cut(s) 359, 383, 523, 645, 742, 880
HpyCH4IV ACGT 4 cut(s) 205, 224, 465, 476
HpyCH4V TGCA 8 cut(s) 52, 152, 375, 423, 435, 626, 632, 829
HpyF10VI GCNNNNNNNGC 7 cut(s) 179, 256, 429, 438, 505, 725, 734
HpyF3I CTNAG 4 cut(s) 11, 218, 260, 638
HpySE526I ACGT 4 cut(s) 205, 224, 465, 476
Hsp92I GRCGYC 2 cut(s) 279, 905
Hsp92II CATG 4 cut(s) 162, 259, 367, 761
HspAI GCGC 1 cut(s) 279
KasI GGCGCC 1 cut(s) 278
Kpn2I TCCGGA 1 cut(s) 193
KpnI GGTACC 1 cut(s) 671
Kzo9I GATC 2 cut(s) 655, 781
LmnI GCTCC 6 cut(s) 37, 178, 213, 232, 461, 471
Lsp1109I GCAGC 3 cut(s) 392, 419, 500
LweI GCATC 1 cut(s) 600
MaeI CTAG 1 cut(s) 546
MaeII ACGT 4 cut(s) 205, 224, 465, 476
MaeIII GTNAC 3 cut(s) 517, 694, 845
MalI GATC 2 cut(s) 657, 783
MboI GATC 2 cut(s) 655, 781
MhlI GDGCHC 2 cut(s) 54, 476
MlsI TGGCCA 1 cut(s) 165
MluCI AATT 2 cut(s) 199, 238
MluNI TGGCCA 1 cut(s) 165
Mly113I GGCGCC 1 cut(s) 279
MlyI GAGTC 2 cut(s) 702, 857
MmeI TCCRAC 2 cut(s) 200, 899
Mox20I TGGCCA 1 cut(s) 165
Mph1103I ATGCAT 1 cut(s) 831
MroI TCCGGA 1 cut(s) 193
MscI TGGCCA 1 cut(s) 165
MseI TTAA 1 cut(s) 681
MslI CAYNNNNRTG 1 cut(s) 464
Msp20I TGGCCA 1 cut(s) 165
MspA1I CMGCKG 2 cut(s) 674, 915
MspI CCGG 4 cut(s) 194, 230, 485, 573
MspR9I CCNGG 2 cut(s) 230, 734
Mva1269I GAATGC 1 cut(s) 628
MvaI CCWGG 1 cut(s) 734
MwoI GCNNNNNNNGC 7 cut(s) 179, 256, 429, 438, 505, 725, 734
NarI GGCGCC 1 cut(s) 279
NciI CCSGG 1 cut(s) 230
NdeI CATATG 1 cut(s) 825
NdeII GATC 2 cut(s) 655, 781
NlaIII CATG 4 cut(s) 162, 259, 367, 761
NlaIV GGNNCC 4 cut(s) 215, 280, 483, 669
NmeAIII GCCGAG 1 cut(s) 745
NmuCI GTSAC 2 cut(s) 517, 694
NsiI ATGCAT 1 cut(s) 831
NspI RCATGY 1 cut(s) 259
OliI CACNNNNGTG 1 cut(s) 464
PcsI WCGNNNNNNNCGW 1 cut(s) 282
PctI GAATGC 1 cut(s) 628
PfeI GAWTC 2 cut(s) 271, 305
PkrI GCNGC 7 cut(s) 283, 407, 434, 490, 498, 554, 557
PleI GAGTC 2 cut(s) 701, 857
PluTI GGCGCC 1 cut(s) 282
PmaCI CACGTG 2 cut(s) 466, 477
PmlI CACGTG 2 cut(s) 466, 477
PpsI GAGTC 2 cut(s) 701, 857
Ppu21I YACGTR 2 cut(s) 466, 477
Psp6I CCWGG 1 cut(s) 732
PspCI CACGTG 2 cut(s) 466, 477
PspEI GGTNACC 1 cut(s) 517
PspFI CCCAGC 1 cut(s) 85
PspGI CCWGG 1 cut(s) 732
PspN4I GGNNCC 4 cut(s) 215, 280, 483, 669
PstI CTGCAG 1 cut(s) 437
PvuII CAGCTG 2 cut(s) 674, 915
RsaI GTAC 2 cut(s) 227, 669
RsaNI GTAC 2 cut(s) 226, 668
RseI CAYNNNNRTG 1 cut(s) 464
SaqAI TTAA 1 cut(s) 681
SatI GCNGC 7 cut(s) 282, 406, 433, 489, 497, 553, 556
Sau3AI GATC 2 cut(s) 655, 781
SchI GAGTC 2 cut(s) 702, 857
ScrFI CCNGG 2 cut(s) 230, 734
SduI GDGCHC 2 cut(s) 54, 476
SfaNI GCATC 1 cut(s) 600
SfcI CTRYAG 1 cut(s) 433
SfoI GGCGCC 1 cut(s) 280
SmiMI CAYNNNNRTG 1 cut(s) 464
Sse9I AATT 2 cut(s) 199, 238
SsiI CCGC 9 cut(s) 180, 282, 302, 348, 496, 499, 552, 555, 558
SspDI GGCGCC 1 cut(s) 278
SspMI CTAG 1 cut(s) 546
StyD4I CCNGG 2 cut(s) 228, 732
TaaI ACNGT 6 cut(s) 359, 383, 523, 645, 742, 880
TaiI ACGT 4 cut(s) 208, 227, 468, 479
TasI AATT 2 cut(s) 199, 238
TauI GCSGC 4 cut(s) 284, 499, 555, 558
TfiI GAWTC 2 cut(s) 271, 305
Tru1I TTAA 1 cut(s) 681
Tru9I TTAA 1 cut(s) 681
TscAI CASTG 4 cut(s) 154, 364, 703, 757
TseFI GTSAC 2 cut(s) 517, 694
TseI GCWGC 3 cut(s) 405, 432, 488
Tsp45I GTSAC 2 cut(s) 517, 694
TspDTI ATGAA 1 cut(s) 819
TspGWI ACGGA 3 cut(s) 330, 342, 574
TspRI CASTG 4 cut(s) 154, 364, 703, 757
VneI GTGCAC 1 cut(s) 50
XapI RAATTY 1 cut(s) 238
XceI RCATGY 1 cut(s) 259
XcmI CCANNNNNNNNNTGG 1 cut(s) 898
XspI CTAG 1 cut(s) 546
Zsp2I ATGCAT 1 cut(s) 831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.