RLG00000030203

Protein LATERAL ROOT PRIMORDIUM

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0002187
Physical Location & Seq
Reverse (-)
57461198 .. 57463801
2604 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030203

Sequence Viewer

Length: 870 bp
ATGTTGGGTCTGAGAGATATCCTCCTGATTGCTCCAAACCATTCTTCTGTGCACCAACAAAACCAACCCATTTCCTCTGACCACCCAACTCTCCCTCTTCCTTCCTCCACAGCTCTTGGGGTTGGCCTCGGCATTTTCCCTCTCCTCACTGCAACCCCATGTGGCCAAAATGCTCCGACCGCCGAGGGCAATCCCGACAATTCACGTTTCTGGAGCCTGAGAACGTACCCGGAGCTGAATTCTTCCAAGCAAGACATGCTCAGTTTTGGGAATCACGGCGGCGCCGAAAGTCAACAGGTTGTGGAATCCGATGACGGAAATGTGAACGGAGAAGGTGGTGGTCGTGGTCGTGGTGGTGGTGAAGACAGTGGCATGAGGGCTTGCAAGGACTGTGGGAACAGAGCCAAGAAAGGCTGCGAGTATTCAAGGTGCAGGACTTGTTGCCGAGGCAGGGGATATGACTGCTCCACTCACGTGAGGAGCACGTGGGTTCCGGCAGCGAGGCGGCGGGAAAGGCAGATGGGTGTGACCGTTGCTGTTGCTGGTGGTGTTGCTAGTGGCGGCGGCGGTGAAGGTTCTTCCGGTTCTTCTTCCGTTGCCAAAAGACCCAGAGTAATGATGCCATCAAAGAATGCAAACGCAAATCTCAGACAGTCATTACCAGATCAAGTTCGGGTACCAGCTGTTTTTAAGTGCCATAGAGTCACTGCCATTAGCAATGGTGAGGCCGAGATTGCTTACCAGGCTACTGTGAAGATCAGTGTGGTAGTAACCAAAGGAATGGAGACTCTTCTTCTCCAACTGTGCCTCCATCCAATGTCTGTGTGGCGTCCACCAGCTGAAGGTTGTTTAGAGATAGCCAGATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF702

Protein Analysis

290

Amino Acids

30.66

Weight (kDa)

9.02

Isoelectric Point (pI)

48.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF702 PF05142 126 - 261 1.9e-46 Domain of unknown function (DUF702)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 676
AccB1I GGYRCC 2 cut(s) 281, 676
AciI CCGC 7 cut(s) 180, 279, 505, 508, 561, 564, 567
AcoI YGGCCR 1 cut(s) 163
AcsI RAATTY 1 cut(s) 238
AcuI CTGAAG 1 cut(s) 861
AcvI CACGTG 2 cut(s) 475, 486
AcyI GRCGYC 2 cut(s) 282, 829
AfaI GTAC 2 cut(s) 227, 678
AfiI CCNNNNNNNGG 2 cut(s) 451, 842
AgsI TTSAA 1 cut(s) 426
AjnI CCWGG 1 cut(s) 741
AjuI GAANNNNNNNTTGG 2 cut(s) 28, 60
AleI CACNNNNGTG 1 cut(s) 473
AluBI AGCT 4 cut(s) 113, 235, 683, 839
AluI AGCT 4 cut(s) 113, 235, 683, 839
Alw21I GWGCWC 2 cut(s) 54, 485
Alw26I GTCTC 1 cut(s) 779
Alw44I GTGCAC 1 cut(s) 50
AoxI GGCC 3 cut(s) 124, 163, 726
ApaLI GTGCAC 1 cut(s) 50
ApeKI GCWGC 2 cut(s) 414, 497
ApoI RAATTY 1 cut(s) 238
Asp718I GGTACC 1 cut(s) 676
AspLEI GCGC 1 cut(s) 284
AsuC2I CCSGG 1 cut(s) 230
AsuHPI GGTGA 3 cut(s) 371, 581, 734
BaeGI GKGCMC 1 cut(s) 54
BalI TGGCCA 1 cut(s) 165
BanI GGYRCC 2 cut(s) 281, 676
BbrPI CACGTG 2 cut(s) 475, 486
BbsI GAAGAC 1 cut(s) 369
Bbv12I GWGCWC 2 cut(s) 54, 485
BbvI GCAGC 2 cut(s) 401, 509
BccI CCATC 3 cut(s) 514, 631, 819
BceAI ACGGC 1 cut(s) 292
BciT130I CCWGG 1 cut(s) 743
BcnI CCSGG 1 cut(s) 230
BcoDI GTCTC 1 cut(s) 779
BfaI CTAG 1 cut(s) 555
BfoI RGCGCY 1 cut(s) 285
BisI GCNGC 6 cut(s) 280, 415, 498, 506, 562, 565
BlsI GCNGC 6 cut(s) 281, 416, 499, 507, 563, 566
Bme1390I CCNGG 2 cut(s) 230, 743
BmiI GGNNCC 4 cut(s) 215, 283, 492, 678
BmrFI CCNGG 2 cut(s) 230, 743
BmsI GCATC 1 cut(s) 609
BpiI GAAGAC 1 cut(s) 369
BplI GAGNNNNNCTC 1 cut(s) 38
BpmI CTGGAG 1 cut(s) 232
BpuMI CCSGG 1 cut(s) 230
BsaAI YACGTR 2 cut(s) 475, 486
BsaHI GRCGYC 2 cut(s) 282, 829
BsaJI CCNNGG 3 cut(s) 127, 183, 445
BsaWI WCCGGW 1 cut(s) 581
BsaXI ACNNNNNCTCC 2 cut(s) 792, 822
Bsc4I CCNNNNNNNGG 2 cut(s) 451, 842
Bse3DI GCAATG 1 cut(s) 724
BseBI CCWGG 1 cut(s) 743
BseDI CCNNGG 3 cut(s) 127, 183, 445
BseGI GGATG 1 cut(s) 811
BseLI CCNNNNNNNGG 2 cut(s) 451, 842
BseMI GCAATG 1 cut(s) 724
BseMII CTCAG 3 cut(s) 209, 274, 661
BseRI GAGGAG 2 cut(s) 134, 493
BseSI GKGCMC 1 cut(s) 54
BseXI GCAGC 2 cut(s) 401, 509
BsgI GTGCAG 1 cut(s) 451
Bsh1285I CGRYCG 1 cut(s) 180
BshFI GGCC 3 cut(s) 126, 165, 728
BshNI GGYRCC 2 cut(s) 281, 676
BsiEI CGRYCG 1 cut(s) 180
BsiHKAI GWGCWC 2 cut(s) 54, 485
BsiSI CCGG 3 cut(s) 230, 494, 582
BslI CCNNNNNNNGG 2 cut(s) 451, 842
BsmAI GTCTC 1 cut(s) 779
BsmI GAATGC 1 cut(s) 637
BsnI GGCC 3 cut(s) 126, 165, 728
Bsp1286I GDGCHC 2 cut(s) 54, 485
Bsp143I GATC 2 cut(s) 664, 756
BspACI CCGC 7 cut(s) 180, 279, 505, 508, 561, 564, 567
BspANI GGCC 3 cut(s) 126, 165, 728
BspCNI CTCAG 3 cut(s) 210, 273, 660
BspLI GGNNCC 4 cut(s) 215, 283, 492, 678
BspT107I GGYRCC 2 cut(s) 281, 676
BsrDI GCAATG 1 cut(s) 724
BssECI CCNNGG 3 cut(s) 127, 183, 445
BssMI GATC 2 cut(s) 664, 756
BssNI GRCGYC 2 cut(s) 282, 829
Bst2UI CCWGG 1 cut(s) 743
Bst4CI ACNGT 6 cut(s) 368, 392, 532, 654, 751, 804
Bst6I CTCTTC 2 cut(s) 102, 795
BstACI GRCGYC 2 cut(s) 282, 829
BstAPI GCANNNNNTGC 1 cut(s) 256
BstBAI YACGTR 2 cut(s) 475, 486
BstC8I GCNNGC 1 cut(s) 382
BstDEI CTNAG 4 cut(s) 11, 218, 260, 647
BstF5I GGATG 1 cut(s) 811
BstH2I RGCGCY 1 cut(s) 285
BstHHI GCGC 1 cut(s) 284
BstKTI GATC 2 cut(s) 667, 759
BstMAI GTCTC 1 cut(s) 779
BstMBI GATC 2 cut(s) 664, 756
BstMCI CGRYCG 1 cut(s) 180
BstMWI GCNNNNNNNGC 5 cut(s) 179, 256, 514, 734, 743
BstNI CCWGG 1 cut(s) 743
BstNSI RCATGY 1 cut(s) 259
BstSCI CCNGG 2 cut(s) 228, 741
BstSLI GKGCMC 1 cut(s) 54
BstV1I GCAGC 2 cut(s) 401, 509
BstV2I GAAGAC 1 cut(s) 369
BstXI CCANNNNNNTGG 1 cut(s) 781
BsuRI GGCC 3 cut(s) 126, 165, 728
BtsCI GGATG 1 cut(s) 811
BtsI GCAGTG 2 cut(s) 147, 705
BtsIMutI CAGTG 4 cut(s) 147, 373, 705, 766
Cac8I GCNNGC 1 cut(s) 382
CfoI GCGC 1 cut(s) 284
CseI GACGC 1 cut(s) 818
Csp6I GTAC 2 cut(s) 226, 677
CspCI CAANNNNNGTGG 4 cut(s) 97, 132, 373, 408
CviAII CATG 3 cut(s) 159, 256, 373
CviQI GTAC 2 cut(s) 226, 677
DdeI CTNAG 4 cut(s) 11, 218, 260, 647
DinI GGCGCC 1 cut(s) 283
DpnI GATC 2 cut(s) 666, 758
DpnII GATC 2 cut(s) 664, 756
EaeI YGGCCR 1 cut(s) 163
Eam1104I CTCTTC 2 cut(s) 102, 795
EarI CTCTTC 2 cut(s) 102, 795
Eco32I GATATC 1 cut(s) 19
Eco57I CTGAAG 1 cut(s) 861
Eco72I CACGTG 2 cut(s) 475, 486
EcoRI GAATTC 1 cut(s) 238
EcoRII CCWGG 1 cut(s) 741
EcoRV GATATC 1 cut(s) 19
EgeI GGCGCC 1 cut(s) 283
EheI GGCGCC 1 cut(s) 283
FaeI CATG 3 cut(s) 162, 259, 376
FaiI YATR 5 cut(s) 160, 257, 374, 459, 699
FatI CATG 3 cut(s) 158, 255, 372
FauI CCCGC 1 cut(s) 501
Fnu4HI GCNGC 6 cut(s) 280, 415, 498, 506, 562, 565
FokI GGATG 1 cut(s) 798
Fsp4HI GCNGC 6 cut(s) 280, 415, 498, 506, 562, 565
FspBI CTAG 1 cut(s) 555
GlaI GCGC 1 cut(s) 283
GluI GCNGC 6 cut(s) 280, 415, 498, 506, 562, 565
GsuI CTGGAG 1 cut(s) 232
HaeII RGCGCY 1 cut(s) 285
HaeIII GGCC 3 cut(s) 126, 165, 728
HapII CCGG 3 cut(s) 230, 494, 582
HgaI GACGC 1 cut(s) 818
HhaI GCGC 1 cut(s) 284
Hin1I GRCGYC 2 cut(s) 282, 829
Hin1II CATG 3 cut(s) 162, 259, 376
Hin6I GCGC 1 cut(s) 282
HinP1I GCGC 1 cut(s) 282
HincII GTYRAC 1 cut(s) 293
HindII GTYRAC 1 cut(s) 293
HinfI GANTC 4 cut(s) 271, 305, 702, 787
HpaII CCGG 3 cut(s) 230, 494, 582
HphI GGTGA 3 cut(s) 371, 581, 734
Hpy166II GTNNAC 4 cut(s) 52, 293, 325, 833
Hpy188I TCNGA 5 cut(s) 12, 79, 177, 310, 650
Hpy188III TCNNGA 3 cut(s) 25, 194, 211
Hpy8I GTNNAC 4 cut(s) 52, 293, 325, 833
HpyAV CCTTC 4 cut(s) 111, 326, 566, 836
HpyCH4III ACNGT 6 cut(s) 368, 392, 532, 654, 751, 804
HpyCH4IV ACGT 4 cut(s) 205, 224, 474, 485
HpyCH4V TGCA 5 cut(s) 52, 152, 384, 432, 635
HpyF10VI GCNNNNNNNGC 5 cut(s) 179, 256, 514, 734, 743
HpyF3I CTNAG 4 cut(s) 11, 218, 260, 647
HpySE526I ACGT 4 cut(s) 205, 224, 474, 485
Hsp92I GRCGYC 2 cut(s) 282, 829
Hsp92II CATG 3 cut(s) 162, 259, 376
HspAI GCGC 1 cut(s) 282
KasI GGCGCC 1 cut(s) 281
KpnI GGTACC 1 cut(s) 680
Kzo9I GATC 2 cut(s) 664, 756
LmnI GCTCC 6 cut(s) 37, 178, 213, 232, 470, 480
Lsp1109I GCAGC 2 cut(s) 401, 509
LweI GCATC 1 cut(s) 609
MaeI CTAG 1 cut(s) 555
MaeII ACGT 4 cut(s) 205, 224, 474, 485
MaeIII GTNAC 3 cut(s) 526, 703, 769
MalI GATC 2 cut(s) 666, 758
MboI GATC 2 cut(s) 664, 756
MhlI GDGCHC 2 cut(s) 54, 485
MlsI TGGCCA 1 cut(s) 165
MluCI AATT 2 cut(s) 199, 238
MluNI TGGCCA 1 cut(s) 165
Mly113I GGCGCC 1 cut(s) 282
MlyI GAGTC 2 cut(s) 711, 781
MmeI TCCRAC 2 cut(s) 200, 823
Mox20I TGGCCA 1 cut(s) 165
MscI TGGCCA 1 cut(s) 165
MseI TTAA 2 cut(s) 690, 868
MslI CAYNNNNRTG 1 cut(s) 473
Msp20I TGGCCA 1 cut(s) 165
MspA1I CMGCKG 2 cut(s) 683, 839
MspI CCGG 3 cut(s) 230, 494, 582
MspR9I CCNGG 2 cut(s) 230, 743
Mva1269I GAATGC 1 cut(s) 637
MvaI CCWGG 1 cut(s) 743
MwoI GCNNNNNNNGC 5 cut(s) 179, 256, 514, 734, 743
NarI GGCGCC 1 cut(s) 282
NciI CCSGG 1 cut(s) 230
NdeII GATC 2 cut(s) 664, 756
NlaIII CATG 3 cut(s) 162, 259, 376
NlaIV GGNNCC 4 cut(s) 215, 283, 492, 678
NmeAIII GCCGAG 4 cut(s) 108, 208, 470, 754
NmuCI GTSAC 2 cut(s) 526, 703
NspI RCATGY 1 cut(s) 259
OliI CACNNNNGTG 1 cut(s) 473
PcsI WCGNNNNNNNCGW 1 cut(s) 282
PctI GAATGC 1 cut(s) 637
PfeI GAWTC 2 cut(s) 271, 305
PkrI GCNGC 6 cut(s) 281, 416, 499, 507, 563, 566
PleI GAGTC 2 cut(s) 710, 781
PluTI GGCGCC 1 cut(s) 285
PmaCI CACGTG 2 cut(s) 475, 486
PmlI CACGTG 2 cut(s) 475, 486
PpsI GAGTC 2 cut(s) 710, 781
Ppu21I YACGTR 2 cut(s) 475, 486
Psp6I CCWGG 1 cut(s) 741
PspCI CACGTG 2 cut(s) 475, 486
PspGI CCWGG 1 cut(s) 741
PspN4I GGNNCC 4 cut(s) 215, 283, 492, 678
PvuII CAGCTG 2 cut(s) 683, 839
RsaI GTAC 2 cut(s) 227, 678
RsaNI GTAC 2 cut(s) 226, 677
RseI CAYNNNNRTG 1 cut(s) 473
SaqAI TTAA 2 cut(s) 690, 868
SatI GCNGC 6 cut(s) 280, 415, 498, 506, 562, 565
Sau3AI GATC 2 cut(s) 664, 756
SchI GAGTC 2 cut(s) 711, 781
ScrFI CCNGG 2 cut(s) 230, 743
SduI GDGCHC 2 cut(s) 54, 485
SfaNI GCATC 1 cut(s) 609
SfoI GGCGCC 1 cut(s) 283
SmiMI CAYNNNNRTG 1 cut(s) 473
Sse9I AATT 2 cut(s) 199, 238
SsiI CCGC 7 cut(s) 180, 279, 505, 508, 561, 564, 567
SspDI GGCGCC 1 cut(s) 281
SspMI CTAG 1 cut(s) 555
StyD4I CCNGG 2 cut(s) 228, 741
TaaI ACNGT 6 cut(s) 368, 392, 532, 654, 751, 804
TaiI ACGT 4 cut(s) 208, 227, 477, 488
TasI AATT 2 cut(s) 199, 238
TauI GCSGC 4 cut(s) 282, 508, 564, 567
TfiI GAWTC 2 cut(s) 271, 305
Tru1I TTAA 2 cut(s) 690, 868
Tru9I TTAA 2 cut(s) 690, 868
TscAI CASTG 4 cut(s) 154, 373, 712, 766
TseFI GTSAC 2 cut(s) 526, 703
TseI GCWGC 2 cut(s) 414, 497
Tsp45I GTSAC 2 cut(s) 526, 703
TspGWI ACGGA 3 cut(s) 330, 342, 583
TspRI CASTG 4 cut(s) 154, 373, 712, 766
VneI GTGCAC 1 cut(s) 50
XapI RAATTY 1 cut(s) 238
XceI RCATGY 1 cut(s) 259
XcmI CCANNNNNNNNNTGG 1 cut(s) 822
XspI CTAG 1 cut(s) 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.