RLG00000008631

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0002187
Physical Location & Seq
Reverse (-)
33783850 .. 33787261
3412 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008631

Sequence Viewer

Length: 837 bp
ATGCTCTCTCTCTCGAAGCTCTCTCCTAGGGTTTCCCGGCAGCGGCAGCAGTTTGGTTCTTTTGACTCGGACGGGTGGCCTCCCTCCTCTCTGGTCTCTGATGAAGGTGGTCTCAAGGCTGTTGTGCGTTGGATCCTCTTGGCATTGGGAGGCCTCGGCCTCCTTCTTCTTGTTTCTAGCGCTCGGTGTTCCTTTGAGTCTCTGGCGATTGGTTATGATGGCCTTCCTCCGTCATGGAGTGTTGTGGGTCCAGATCTAGTAGGTTGCTCTGGTGGTTGGGCTGAGGGGGAATTGAGCTTCCCTCCTGTGTCCACCGGCGTCAGATCTGGAGCCATATTTGATATGTGGCGGTGGCGCGTGCGGCGGCCAGGCGATGATGGTAGTGTAATCGGACGGGATGTGGGGCTTTCGGTGTCCTTGGGGTGGAGCGACGTTGGGGCTGCCGGCGCGAGGTGGTTGTCGGGAGGTTTGGGCACTGACGTCAGCATGGTGGATCAAAGGCTGGATCTAGATCTTGGGCTTGTTGTAGCATGGGCTCGTAGAAATTTGGGGTCCCATCGCTGGACACACAACCCCACCCACCAGCCTTCAAACATCCGCTGTATTCCTCCACAAATCCCTGCAATCTCAGACGAGAACAACCTGGTGTCGTCCCCATCACCTCTTCCACTTCGACTTGATTTGTTTCGGGAGATCCCACCTTTGTTCATCAAGGAACCAGTACACCAGAGGTCAAGAGGTCCCGTTCGGCTGCACCCGCCTTGTGTCAATGAGGCCAGAGGCCTAAGCGGTCACGCCTACTTGGAGGGCCGCCAGACAAGAAAGGGGGAAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

279

Amino Acids

30.04

Weight (kDa)

8.83

Isoelectric Point (pI)

53.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 483
AccII CGCG 2 cut(s) 357, 449
AciI CCGC 8 cut(s) 43, 349, 361, 364, 598, 758, 789, 811
AclWI GGATC 5 cut(s) 127, 140, 501, 513, 688
AcoI YGGCCR 1 cut(s) 365
AcsI RAATTY 1 cut(s) 544
AcyI GRCGYC 2 cut(s) 318, 480
AfaI GTAC 1 cut(s) 723
AfeI AGCGCT 1 cut(s) 181
AfiI CCNNNNNNNGG 4 cut(s) 42, 423, 450, 561
AgsI TTSAA 1 cut(s) 591
AjnI CCWGG 2 cut(s) 367, 642
AluBI AGCT 2 cut(s) 19, 297
AluI AGCT 2 cut(s) 19, 297
Alw26I GTCTC 3 cut(s) 100, 116, 204
AlwI GGATC 5 cut(s) 127, 140, 501, 513, 688
Aor51HI AGCGCT 1 cut(s) 181
AoxI GGCC 8 cut(s) 77, 151, 157, 220, 365, 774, 781, 808
ApeKI GCWGC 4 cut(s) 40, 46, 440, 751
ApoI RAATTY 1 cut(s) 544
AspA2I CCTAGG 1 cut(s) 26
AspLEI GCGC 3 cut(s) 182, 357, 449
AspS9I GGNCC 4 cut(s) 248, 552, 740, 808
AsuC2I CCSGG 1 cut(s) 37
AsuHPI GGTGA 1 cut(s) 651
AvaII GGWCC 3 cut(s) 248, 552, 740
AvrII CCTAGG 1 cut(s) 26
BaeGI GKGCMC 1 cut(s) 476
BamHI GGATCC 1 cut(s) 132
BanII GRGCYC 1 cut(s) 538
BbvCI CCTCAGC 1 cut(s) 282
BbvI GCAGC 4 cut(s) 52, 58, 427, 738
BccI CCATC 4 cut(s) 212, 371, 564, 664
BciT130I CCWGG 2 cut(s) 369, 644
BcnI CCSGG 1 cut(s) 37
BcoDI GTCTC 3 cut(s) 100, 116, 204
BfaI CTAG 4 cut(s) 27, 177, 257, 509
BfoI RGCGCY 1 cut(s) 183
BglII AGATCT 3 cut(s) 253, 323, 511
BisI GCNGC 8 cut(s) 41, 44, 47, 362, 365, 441, 752, 811
BlnI CCTAGG 1 cut(s) 26
BlsI GCNGC 8 cut(s) 42, 45, 48, 363, 366, 442, 753, 812
Bme1390I CCNGG 3 cut(s) 37, 369, 644
Bme18I GGWCC 3 cut(s) 248, 552, 740
BmgT120I GGNCC 4 cut(s) 248, 552, 740, 808
BmiI GGNNCC 7 cut(s) 134, 249, 331, 553, 554, 717, 742
BmrFI CCNGG 3 cut(s) 37, 369, 644
BplI GAGNNNNNCTC 2 cut(s) 286, 318
BpmI CTGGAG 1 cut(s) 348
Bpu10I CCTNAGC 2 cut(s) 282, 785
BpuEI CTTGAG 1 cut(s) 98
BpuMI CCSGG 1 cut(s) 37
BsaBI GATNNNNATC 1 cut(s) 510
BsaHI GRCGYC 2 cut(s) 318, 480
BsaI GGTCTC 2 cut(s) 100, 116
BsaJI CCNNGG 3 cut(s) 26, 154, 417
Bsc4I CCNNNNNNNGG 4 cut(s) 42, 423, 450, 561
Bse118I RCCGGY 2 cut(s) 314, 443
Bse1I ACTGG 1 cut(s) 719
Bse8I GATNNNNATC 1 cut(s) 510
BseBI CCWGG 2 cut(s) 369, 644
BseDI CCNNGG 3 cut(s) 26, 154, 417
BseGI GGATG 2 cut(s) 403, 594
BseJI GATNNNNATC 1 cut(s) 510
BseLI CCNNNNNNNGG 4 cut(s) 42, 423, 450, 561
BseMII CTCAG 2 cut(s) 273, 642
BseNI ACTGG 1 cut(s) 719
BseRI GAGGAG 1 cut(s) 76
BseSI GKGCMC 1 cut(s) 476
BseXI GCAGC 4 cut(s) 52, 58, 427, 738
BsgI GTGCAG 1 cut(s) 737
Bsh1236I CGCG 2 cut(s) 357, 449
BshFI GGCC 8 cut(s) 79, 153, 159, 222, 367, 776, 783, 810
BsiSI CCGG 3 cut(s) 37, 315, 444
BslFI GGGAC 3 cut(s) 538, 637, 726
BslI CCNNNNNNNGG 4 cut(s) 42, 423, 450, 561
BsmAI GTCTC 3 cut(s) 100, 116, 204
BsmFI GGGAC 3 cut(s) 538, 637, 726
BsnI GGCC 8 cut(s) 79, 153, 159, 222, 367, 776, 783, 810
Bso31I GGTCTC 2 cut(s) 100, 116
Bsp1286I GDGCHC 2 cut(s) 476, 538
Bsp143I GATC 7 cut(s) 132, 253, 323, 493, 505, 511, 693
BspACI CCGC 8 cut(s) 43, 349, 361, 364, 598, 758, 789, 811
BspANI GGCC 8 cut(s) 79, 153, 159, 222, 367, 776, 783, 810
BspCNI CTCAG 2 cut(s) 274, 641
BspFNI CGCG 2 cut(s) 357, 449
BspLI GGNNCC 7 cut(s) 134, 249, 331, 553, 554, 717, 742
BspPI GGATC 5 cut(s) 127, 140, 501, 513, 688
BspTNI GGTCTC 2 cut(s) 100, 116
BsrFI RCCGGY 2 cut(s) 314, 443
BsrI ACTGG 1 cut(s) 719
BssAI RCCGGY 2 cut(s) 314, 443
BssECI CCNNGG 3 cut(s) 26, 154, 417
BssMI GATC 7 cut(s) 132, 253, 323, 493, 505, 511, 693
BssNI GRCGYC 2 cut(s) 318, 480
BssT1I CCWWGG 2 cut(s) 26, 417
Bst2UI CCWGG 2 cut(s) 369, 644
Bst6I CTCTTC 1 cut(s) 669
BstACI GRCGYC 2 cut(s) 318, 480
BstC8I GCNNGC 2 cut(s) 359, 445
BstDEI CTNAG 3 cut(s) 282, 628, 785
BstF5I GGATG 2 cut(s) 403, 594
BstFNI CGCG 2 cut(s) 357, 449
BstH2I RGCGCY 1 cut(s) 183
BstHHI GCGC 3 cut(s) 182, 357, 449
BstKTI GATC 7 cut(s) 135, 256, 326, 496, 508, 514, 696
BstMAI GTCTC 3 cut(s) 100, 116, 204
BstMBI GATC 7 cut(s) 132, 253, 323, 493, 505, 511, 693
BstMWI GCNNNNNNNGC 4 cut(s) 46, 361, 446, 757
BstNI CCWGG 2 cut(s) 369, 644
BstSCI CCNGG 3 cut(s) 35, 367, 642
BstSLI GKGCMC 1 cut(s) 476
BstUI CGCG 2 cut(s) 357, 449
BstV1I GCAGC 4 cut(s) 52, 58, 427, 738
BstX2I RGATCY 6 cut(s) 132, 253, 323, 505, 511, 693
BstYI RGATCY 6 cut(s) 132, 253, 323, 505, 511, 693
BsuRI GGCC 8 cut(s) 79, 153, 159, 222, 367, 776, 783, 810
BtgZI GCGATG 2 cut(s) 387, 542
BtsCI GGATG 2 cut(s) 403, 594
BtsIMutI CAGTG 1 cut(s) 474
Cac8I GCNNGC 2 cut(s) 359, 445
CfoI GCGC 3 cut(s) 182, 357, 449
Cfr10I RCCGGY 2 cut(s) 314, 443
Cfr13I GGNCC 4 cut(s) 248, 552, 740, 808
CseI GACGC 1 cut(s) 307
CsiI ACCWGGT 1 cut(s) 642
Csp6I GTAC 1 cut(s) 722
CviAII CATG 3 cut(s) 234, 487, 531
CviQI GTAC 1 cut(s) 722
DdeI CTNAG 3 cut(s) 282, 628, 785
DpnI GATC 7 cut(s) 134, 255, 325, 495, 507, 513, 695
DpnII GATC 7 cut(s) 132, 253, 323, 493, 505, 511, 693
EaeI YGGCCR 1 cut(s) 365
Eam1104I CTCTTC 1 cut(s) 669
EarI CTCTTC 1 cut(s) 669
Eco130I CCWWGG 2 cut(s) 26, 417
Eco147I AGGCCT 2 cut(s) 153, 783
Eco24I GRGCYC 1 cut(s) 538
Eco31I GGTCTC 2 cut(s) 100, 116
Eco47I GGWCC 3 cut(s) 248, 552, 740
Eco47III AGCGCT 1 cut(s) 181
EcoO109I RGGNCCY 2 cut(s) 552, 740
EcoRII CCWGG 2 cut(s) 367, 642
EcoT14I CCWWGG 2 cut(s) 26, 417
EcoT38I GRGCYC 1 cut(s) 538
ErhI CCWWGG 2 cut(s) 26, 417
FaeI CATG 3 cut(s) 237, 490, 534
FaiI YATR 6 cut(s) 216, 235, 335, 344, 488, 532
FaqI GGGAC 3 cut(s) 538, 637, 726
FatI CATG 3 cut(s) 233, 486, 530
FauI CCCGC 1 cut(s) 765
Fnu4HI GCNGC 8 cut(s) 41, 44, 47, 362, 365, 441, 752, 811
FokI GGATG 2 cut(s) 410, 581
FriOI GRGCYC 1 cut(s) 538
Fsp4HI GCNGC 8 cut(s) 41, 44, 47, 362, 365, 441, 752, 811
FspBI CTAG 4 cut(s) 27, 177, 257, 509
GlaI GCGC 3 cut(s) 181, 356, 448
GluI GCNGC 8 cut(s) 41, 44, 47, 362, 365, 441, 752, 811
GsuI CTGGAG 1 cut(s) 348
HaeII RGCGCY 1 cut(s) 183
HaeIII GGCC 8 cut(s) 79, 153, 159, 222, 367, 776, 783, 810
HapII CCGG 3 cut(s) 37, 315, 444
HgaI GACGC 1 cut(s) 307
HhaI GCGC 3 cut(s) 182, 357, 449
Hin1I GRCGYC 2 cut(s) 318, 480
Hin1II CATG 3 cut(s) 237, 490, 534
Hin6I GCGC 3 cut(s) 180, 355, 447
HinP1I GCGC 3 cut(s) 180, 355, 447
HinfI GANTC 2 cut(s) 65, 197
HpaII CCGG 3 cut(s) 37, 315, 444
HphI GGTGA 1 cut(s) 651
Hpy166II GTNNAC 2 cut(s) 312, 724
Hpy188I TCNGA 5 cut(s) 70, 100, 323, 392, 631
Hpy188III TCNNGA 7 cut(s) 13, 251, 327, 462, 509, 689, 735
Hpy8I GTNNAC 2 cut(s) 312, 724
Hpy99I CGWCG 1 cut(s) 434
HpyAV CCTTC 5 cut(s) 98, 173, 233, 597, 824
HpyCH4IV ACGT 2 cut(s) 432, 480
HpyCH4V TGCA 2 cut(s) 623, 754
HpyF10VI GCNNNNNNNGC 4 cut(s) 46, 361, 446, 757
HpyF3I CTNAG 3 cut(s) 282, 628, 785
HpySE526I ACGT 2 cut(s) 432, 480
Hsp92I GRCGYC 2 cut(s) 318, 480
Hsp92II CATG 3 cut(s) 237, 490, 534
HspAI GCGC 3 cut(s) 180, 355, 447
KflI GGGWCCC 1 cut(s) 552
KroI GCCGGC 1 cut(s) 443
KroNI GCCGGC 1 cut(s) 445
Kzo9I GATC 7 cut(s) 132, 253, 323, 493, 505, 511, 693
LmnI GCTCC 2 cut(s) 329, 426
Lsp1109I GCAGC 4 cut(s) 52, 58, 427, 738
MabI ACCWGGT 1 cut(s) 642
MaeI CTAG 4 cut(s) 27, 177, 257, 509
MaeII ACGT 2 cut(s) 432, 480
MaeIII GTNAC 1 cut(s) 791
MalI GATC 7 cut(s) 134, 255, 325, 495, 507, 513, 695
MboI GATC 7 cut(s) 132, 253, 323, 493, 505, 511, 693
MboII GAAGA 2 cut(s) 158, 656
MflI RGATCY 6 cut(s) 132, 253, 323, 505, 511, 693
MhlI GDGCHC 2 cut(s) 476, 538
MluCI AATT 2 cut(s) 290, 544
MlyI GAGTC 2 cut(s) 59, 206
MmeI TCCRAC 1 cut(s) 110
MroNI GCCGGC 1 cut(s) 443
MspA1I CMGCKG 2 cut(s) 43, 600
MspI CCGG 3 cut(s) 37, 315, 444
MspR9I CCNGG 3 cut(s) 37, 369, 644
MvaI CCWGG 2 cut(s) 369, 644
MvnI CGCG 2 cut(s) 357, 449
MwoI GCNNNNNNNGC 4 cut(s) 46, 361, 446, 757
NaeI GCCGGC 1 cut(s) 445
NciI CCSGG 1 cut(s) 37
NdeII GATC 7 cut(s) 132, 253, 323, 493, 505, 511, 693
NgoMIV GCCGGC 1 cut(s) 443
NlaIII CATG 3 cut(s) 237, 490, 534
NlaIV GGNNCC 7 cut(s) 134, 249, 331, 553, 554, 717, 742
NmeAIII GCCGAG 1 cut(s) 135
NmuCI GTSAC 1 cut(s) 791
PceI AGGCCT 2 cut(s) 153, 783
PdiI GCCGGC 1 cut(s) 445
PkrI GCNGC 8 cut(s) 42, 45, 48, 363, 366, 442, 753, 812
PleI GAGTC 2 cut(s) 59, 205
PpsI GAGTC 2 cut(s) 59, 205
PpuMI RGGWCCY 2 cut(s) 552, 740
Psp5II RGGWCCY 2 cut(s) 552, 740
Psp6I CCWGG 2 cut(s) 367, 642
PspGI CCWGG 2 cut(s) 367, 642
PspN4I GGNNCC 7 cut(s) 134, 249, 331, 553, 554, 717, 742
PspPI GGNCC 4 cut(s) 248, 552, 740, 808
PspPPI RGGWCCY 2 cut(s) 552, 740
PsuI RGATCY 6 cut(s) 132, 253, 323, 505, 511, 693
RsaI GTAC 1 cut(s) 723
RsaNI GTAC 1 cut(s) 722
SatI GCNGC 8 cut(s) 41, 44, 47, 362, 365, 441, 752, 811
Sau3AI GATC 7 cut(s) 132, 253, 323, 493, 505, 511, 693
Sau96I GGNCC 4 cut(s) 248, 552, 740, 808
SchI GAGTC 2 cut(s) 59, 206
ScrFI CCNGG 3 cut(s) 37, 369, 644
SduI GDGCHC 2 cut(s) 476, 538
SexAI ACCWGGT 1 cut(s) 642
SgrAI CRCCGGYG 1 cut(s) 314
SinI GGWCC 3 cut(s) 248, 552, 740
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
Sse9I AATT 2 cut(s) 290, 544
SseBI AGGCCT 2 cut(s) 153, 783
SsiI CCGC 8 cut(s) 43, 349, 361, 364, 598, 758, 789, 811
SspMI CTAG 4 cut(s) 27, 177, 257, 509
StuI AGGCCT 2 cut(s) 153, 783
StyD4I CCNGG 3 cut(s) 35, 367, 642
StyI CCWWGG 2 cut(s) 26, 417
TaiI ACGT 2 cut(s) 435, 483
TaqI TCGA 2 cut(s) 14, 673
TasI AATT 2 cut(s) 290, 544
TatI WGTACW 1 cut(s) 721
TauI GCSGC 4 cut(s) 46, 364, 367, 813
TscAI CASTG 1 cut(s) 481
TseFI GTSAC 1 cut(s) 791
TseI GCWGC 4 cut(s) 40, 46, 440, 751
Tsp45I GTSAC 1 cut(s) 791
TspDTI ATGAA 2 cut(s) 117, 697
TspGWI ACGGA 1 cut(s) 219
TspRI CASTG 1 cut(s) 481
VpaK11BI GGWCC 3 cut(s) 248, 552, 740
XapI RAATTY 1 cut(s) 544
XbaI TCTAGA 1 cut(s) 508
XmaJI CCTAGG 1 cut(s) 26
XspI CTAG 4 cut(s) 27, 177, 257, 509
ZraI GACGTC 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.