Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000159

Orthogroup ID

OG0002187

Physical Location & Seq

Genomic Coordinates Forward (+)

299445 .. 302908

Gene Structure 3464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_159G00432690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGAATCATATTATTGTGGCTTGTTTTGTTTACCCAAAATTGCCATATGCTCAATTTGACATCCTTTTTCAGTTTTTCTCTCACAGCTTTTTATATCCATCTCTTTTCTGCTACTCTCTTTCTTTCACAATAAAATATGATATACTGTTTCTAAGTGGGAGTTCTCATAAGCTGTTGCAGCAGTGGCAGAATCTTCAGAGCTCAGTCCTATTCCTCTGCACAAATCTAATCTCTTTCCTCCATAACCATCACAACAAGGTCAGAATACACAGAAATCTCCAGACTTTGCAAAACCCCTGTCAAACTAATTCTTGGCACCTATTCAATCCATATGAGCAAACCATGTTGGGTCTGAGAGATATCCTCCTGATTGCTCCAAACCATTCTTCTGTGCACCAACAAACCCAACCCATTTCCTCTGACCACCCAACTCTCCCTCTTCCTTCCTCCACAGCTCTTGGGGTTGGCCTCGGCATTTTCCCTCTCCTCACTGCAACCCCATGTGGCCAAAATGCTCCGACCGCCGAGGGCAATCAGGACAATTCACGTTTCTGGAGCCTGAGAACGTACCCGGAGCTTCATTCTTCCAAGCAAGACATGCTCAGTTTTGGGAATCACGGCGGCGCCGAAAGTCAACAGGTGGTGGAATCCGACGACGGAAATGTGAACGGAGAAGGTGGTCGTGGTCGTGGTGGTGAAGACAGTGGCATGAGGGCTTGCAAGGACTGTGGGAACAGAGCCAAGAAAGGCTGCGAGTATTCAAGGTGCAGGACTTGTTGCAGAGGCAGGGGATATGACTGCTCCACTCACGTGAGGAGCACGTGGGTTCCGGCAGCGAGGCGGCGGGAAAGGCAGATGGGTGTGACCGTTGCTGTTGCTGGTGGTGTTGCTAGTGGCGGCGGCGGTGAAGATGCAAATCTCAGACAGTCATTACCAGATCAAGTTCGGGTACCAGCTGTTTTTAAGTGCCATAGAGTCACTGCCATTAGCAATGGTGAAGCTGAGATTGCTTACCAGGCTACTGTGAAAATCAGTGGTCATGTATTCAAGGGGTTGCTCTATGATCGTGGGGTTGATAAGAAGAATGAATACCCTTGTATTTCACATATGCATTTGGGAAGTGGTAGTAACCAAAGGAATGGAGACTCTTCTTCTCCAACTGTGCCTCCATCCAATGTCTGTGTGGCGTCCACCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF702

Protein Analysis

399

Amino Acids

43.85

Weight (kDa)

8.68

Isoelectric Point (pI)

48.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF702	PF05142	238 - 289	1.2e-24	Domain of unknown function (DUF702)
DUF702	PF05142	307 - 359	2e-20	Domain of unknown function (DUF702)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54430
fragaria_vesca	FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110
malus_domestica	MD02G1285800.v1.1
prunus_persica	Prupe.2G036500_v2.0.a1 Prupe.2G036500_v2.0.a1 Prupe.2G036500_v2.0.a1 Prupe.2G036500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0319531 RchiOBHm_Chr1g0324311
rosa_laevigata	RLG00000008631 RLG00000017375 RLG00000030203 RLG00000033698
rosa_multiflora	Rmu_sc0004082.1_g000006 Rmu_sc0004082.1_g000019 Rmu_sc0004082.1_g000020
rosa_roxburghii	Rroxscaffold_159G00432690 Rroxscaffold_159G00432760 Rroxscaffold_159G00432820 Rroxscaffold_4G00325640 Rroxscaffold_4G00325700
rosa_rugosa	Rorug01G0045000 Rorug01G0045100 Rorug01G0045200 Rorug01G0045300 Rorug01G0045400 Rorug01G0045500
rosa_samantha	Rh1AG061000 Rh1BG052100 Rh1CG063200 Rh1DG067600 Rh6AG126800 Rh6CG264300 Rh7CG487400
rosa_wichuraiana	Rw1G005190 Rw4G000540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	949
AccB1I	GGYRCC	3 cut(s)	315, 623, 949
AciI	CCGC	7 cut(s)	522, 621, 841, 844, 897, 900, 903
AcoI	YGGCCR	1 cut(s)	505
AcuI	CTGAAG	1 cut(s)	179
AcvI	CACGTG	2 cut(s)	811, 822
AcyI	GRCGYC	2 cut(s)	624, 1187
AfaI	GTAC	2 cut(s)	569, 951
AgsI	TTSAA	3 cut(s)	325, 762, 1048
AjnI	CCWGG	1 cut(s)	1014
AjuI	GAANNNNNNNTTGG	2 cut(s)	370, 402
AleI	CACNNNNGTG	1 cut(s)	809
AluBI	AGCT	8 cut(s)	87, 172, 201, 455, 577, 956, 1001, 1197
AluI	AGCT	8 cut(s)	87, 172, 201, 455, 577, 956, 1001, 1197
Alw21I	GWGCWC	3 cut(s)	203, 396, 821
Alw26I	GTCTC	1 cut(s)	1137
Alw44I	GTGCAC	1 cut(s)	392
AoxI	GGCC	2 cut(s)	466, 505
ApaLI	GTGCAC	1 cut(s)	392
ApeKI	GCWGC	3 cut(s)	178, 750, 833
ArsI	GACNNNNNNTTYG	2 cut(s)	283, 315
Asp718I	GGTACC	1 cut(s)	949
AspLEI	GCGC	1 cut(s)	626
AsuC2I	CCSGG	1 cut(s)	572
AsuHPI	GGTGA	3 cut(s)	707, 917, 1007
BaeGI	GKGCMC	1 cut(s)	396
BalI	TGGCCA	1 cut(s)	507
BanI	GGYRCC	3 cut(s)	315, 623, 949
BanII	GRGCYC	1 cut(s)	203
BarI	GAAGNNNNNNTAC	2 cut(s)	1073, 1105
BbrPI	CACGTG	2 cut(s)	811, 822
BbsI	GAAGAC	1 cut(s)	705
Bbv12I	GWGCWC	3 cut(s)	203, 396, 821
BbvI	GCAGC	3 cut(s)	190, 737, 845
BccI	CCATC	4 cut(s)	106, 255, 850, 1177
BceAI	ACGGC	1 cut(s)	634
BciT130I	CCWGG	1 cut(s)	1016
BcnI	CCSGG	1 cut(s)	572
BcoDI	GTCTC	1 cut(s)	1137
BfaI	CTAG	1 cut(s)	891
BfoI	RGCGCY	1 cut(s)	627
BisI	GCNGC	7 cut(s)	179, 622, 751, 834, 842, 898, 901
BlsI	GCNGC	7 cut(s)	180, 623, 752, 835, 843, 899, 902
Bme1390I	CCNGG	2 cut(s)	572, 1016
BmiI	GGNNCC	5 cut(s)	317, 557, 625, 828, 951
BmrFI	CCNGG	2 cut(s)	572, 1016
BmsI	GCATC	1 cut(s)	901
BpiI	GAAGAC	1 cut(s)	705
BplI	GAGNNNNNCTC	2 cut(s)	348, 380
BpmI	CTGGAG	2 cut(s)	263, 574
BpuMI	CCSGG	1 cut(s)	572
BsaAI	YACGTR	2 cut(s)	811, 822
BsaBI	GATNNNNATC	1 cut(s)	915
BsaHI	GRCGYC	2 cut(s)	624, 1187
BsaJI	CCNNGG	2 cut(s)	469, 525
BsaXI	ACNNNNNCTCC	2 cut(s)	1150, 1180
Bse3DI	GCAATG	1 cut(s)	997
Bse8I	GATNNNNATC	1 cut(s)	915
BseBI	CCWGG	1 cut(s)	1016
BseDI	CCNNGG	2 cut(s)	469, 525
BseGI	GGATG	2 cut(s)	60, 1169
BseJI	GATNNNNATC	1 cut(s)	915
BseMI	GCAATG	1 cut(s)	997
BseMII	CTCAG	6 cut(s)	216, 344, 551, 616, 934, 993
BseRI	GAGGAG	2 cut(s)	476, 829
BseSI	GKGCMC	1 cut(s)	396
BseXI	GCAGC	3 cut(s)	190, 737, 845
BsgI	GTGCAG	2 cut(s)	202, 787
Bsh1285I	CGRYCG	1 cut(s)	522
BshFI	GGCC	2 cut(s)	468, 507
BshNI	GGYRCC	3 cut(s)	315, 623, 949
BsiEI	CGRYCG	1 cut(s)	522
BsiHKAI	GWGCWC	3 cut(s)	203, 396, 821
BsiSI	CCGG	2 cut(s)	572, 830
BsmAI	GTCTC	1 cut(s)	1137
BsnI	GGCC	2 cut(s)	468, 507
Bsp1286I	GDGCHC	3 cut(s)	203, 396, 821
Bsp143I	GATC	2 cut(s)	937, 1063
BspACI	CCGC	7 cut(s)	522, 621, 841, 844, 897, 900, 903
BspANI	GGCC	2 cut(s)	468, 507
BspCNI	CTCAG	6 cut(s)	215, 345, 552, 615, 933, 994
BspLI	GGNNCC	5 cut(s)	317, 557, 625, 828, 951
BspT107I	GGYRCC	3 cut(s)	315, 623, 949
BsrDI	GCAATG	1 cut(s)	997
BssECI	CCNNGG	2 cut(s)	469, 525
BssMI	GATC	2 cut(s)	937, 1063
BssNI	GRCGYC	2 cut(s)	624, 1187
Bst2UI	CCWGG	1 cut(s)	1016
Bst4CI	ACNGT	7 cut(s)	147, 704, 728, 868, 927, 1024, 1162
Bst6I	CTCTTC	2 cut(s)	444, 1153
BstACI	GRCGYC	2 cut(s)	624, 1187
BstAPI	GCANNNNNTGC	1 cut(s)	598
BstBAI	YACGTR	2 cut(s)	811, 822
BstC8I	GCNNGC	1 cut(s)	718
BstDEI	CTNAG	7 cut(s)	152, 202, 353, 560, 602, 920, 1002
BstF5I	GGATG	2 cut(s)	60, 1169
BstH2I	RGCGCY	1 cut(s)	627
BstHHI	GCGC	1 cut(s)	626
BstKTI	GATC	2 cut(s)	940, 1066
BstMAI	GTCTC	1 cut(s)	1137
BstMBI	GATC	2 cut(s)	937, 1063
BstMCI	CGRYCG	1 cut(s)	522
BstMWI	GCNNNNNNNGC	7 cut(s)	178, 184, 521, 598, 850, 1007, 1016
BstNI	CCWGG	1 cut(s)	1016
BstNSI	RCATGY	1 cut(s)	601
BstSCI	CCNGG	2 cut(s)	570, 1014
BstSLI	GKGCMC	1 cut(s)	396
BstV1I	GCAGC	3 cut(s)	190, 737, 845
BstV2I	GAAGAC	1 cut(s)	705
BstXI	CCANNNNNNTGG	1 cut(s)	1139
BsuRI	GGCC	2 cut(s)	468, 507
BtsCI	GGATG	2 cut(s)	60, 1169
BtsI	GCAGTG	3 cut(s)	188, 489, 978
BtsIMutI	CAGTG	5 cut(s)	188, 489, 709, 978, 1039
Cac8I	GCNNGC	1 cut(s)	718
CfoI	GCGC	1 cut(s)	626
CseI	GACGC	1 cut(s)	1176
Csp6I	GTAC	2 cut(s)	568, 950
CspCI	CAANNNNNGTGG	4 cut(s)	439, 474, 709, 744
CviAII	CATG	5 cut(s)	343, 501, 598, 709, 1040
CviQI	GTAC	2 cut(s)	568, 950
DdeI	CTNAG	7 cut(s)	152, 202, 353, 560, 602, 920, 1002
DinI	GGCGCC	1 cut(s)	625
DpnI	GATC	2 cut(s)	939, 1065
DpnII	GATC	2 cut(s)	937, 1063
EaeI	YGGCCR	1 cut(s)	505
Eam1104I	CTCTTC	2 cut(s)	444, 1153
EarI	CTCTTC	2 cut(s)	444, 1153
Ecl136II	GAGCTC	1 cut(s)	201
Eco24I	GRGCYC	1 cut(s)	203
Eco32I	GATATC	1 cut(s)	361
Eco53kI	GAGCTC	1 cut(s)	201
Eco57I	CTGAAG	1 cut(s)	179
Eco72I	CACGTG	2 cut(s)	811, 822
EcoICRI	GAGCTC	1 cut(s)	201
EcoRII	CCWGG	1 cut(s)	1014
EcoRV	GATATC	1 cut(s)	361
EcoT22I	ATGCAT	1 cut(s)	1113
EcoT38I	GRGCYC	1 cut(s)	203
EgeI	GGCGCC	1 cut(s)	625
EheI	GGCGCC	1 cut(s)	625
FaeI	CATG	5 cut(s)	346, 504, 601, 712, 1043
FatI	CATG	5 cut(s)	342, 500, 597, 708, 1039
FauI	CCCGC	1 cut(s)	837
FauNDI	CATATG	3 cut(s)	46, 331, 1107
Fnu4HI	GCNGC	7 cut(s)	179, 622, 751, 834, 842, 898, 901
FokI	GGATG	2 cut(s)	47, 1156
FriOI	GRGCYC	1 cut(s)	203
Fsp4HI	GCNGC	7 cut(s)	179, 622, 751, 834, 842, 898, 901
FspBI	CTAG	1 cut(s)	891
GlaI	GCGC	1 cut(s)	625
GluI	GCNGC	7 cut(s)	179, 622, 751, 834, 842, 898, 901
GsuI	CTGGAG	2 cut(s)	263, 574
HaeII	RGCGCY	1 cut(s)	627
HaeIII	GGCC	2 cut(s)	468, 507
HapII	CCGG	2 cut(s)	572, 830
HgaI	GACGC	1 cut(s)	1176
HhaI	GCGC	1 cut(s)	626
Hin1I	GRCGYC	2 cut(s)	624, 1187
Hin1II	CATG	5 cut(s)	346, 504, 601, 712, 1043
Hin6I	GCGC	1 cut(s)	624
HinP1I	GCGC	1 cut(s)	624
HincII	GTYRAC	1 cut(s)	635
HindII	GTYRAC	1 cut(s)	635
HinfI	GANTC	6 cut(s)	4, 190, 613, 647, 975, 1145
HpaII	CCGG	2 cut(s)	572, 830
HphI	GGTGA	3 cut(s)	707, 917, 1007
Hpy166II	GTNNAC	5 cut(s)	31, 394, 635, 667, 1191
Hpy188I	TCNGA	7 cut(s)	198, 263, 354, 421, 519, 652, 923
Hpy188III	TCNNGA	4 cut(s)	280, 367, 536, 553
Hpy8I	GTNNAC	5 cut(s)	31, 394, 635, 667, 1191
Hpy99I	CGWCG	2 cut(s)	656, 659
HpyAV	CCTTC	2 cut(s)	453, 668
HpyCH4III	ACNGT	7 cut(s)	147, 704, 728, 868, 927, 1024, 1162
HpyCH4IV	ACGT	4 cut(s)	547, 566, 810, 821
HpyF10VI	GCNNNNNNNGC	7 cut(s)	178, 184, 521, 598, 850, 1007, 1016
HpyF3I	CTNAG	7 cut(s)	152, 202, 353, 560, 602, 920, 1002
HpySE526I	ACGT	4 cut(s)	547, 566, 810, 821
Hsp92I	GRCGYC	2 cut(s)	624, 1187
Hsp92II	CATG	5 cut(s)	346, 504, 601, 712, 1043
HspAI	GCGC	1 cut(s)	624
KasI	GGCGCC	1 cut(s)	623
KpnI	GGTACC	1 cut(s)	953
Kzo9I	GATC	2 cut(s)	937, 1063
LmnI	GCTCC	6 cut(s)	379, 520, 555, 574, 806, 816
Lsp1109I	GCAGC	3 cut(s)	190, 737, 845
LweI	GCATC	1 cut(s)	901
MaeI	CTAG	1 cut(s)	891
MaeII	ACGT	4 cut(s)	547, 566, 810, 821
MaeIII	GTNAC	3 cut(s)	862, 976, 1127
MalI	GATC	2 cut(s)	939, 1065
MboI	GATC	2 cut(s)	937, 1063
MboII	GAAGA	9 cut(s)	185, 378, 431, 576, 710, 920, 1093, 1140, 1143
MhlI	GDGCHC	3 cut(s)	203, 396, 821
MlsI	TGGCCA	1 cut(s)	507
MluCI	AATT	4 cut(s)	38, 53, 307, 541
MluNI	TGGCCA	1 cut(s)	507
Mly113I	GGCGCC	1 cut(s)	624
MlyI	GAGTC	2 cut(s)	984, 1139
MmeI	TCCRAC	3 cut(s)	542, 675, 1181
Mox20I	TGGCCA	1 cut(s)	507
Mph1103I	ATGCAT	1 cut(s)	1113
MscI	TGGCCA	1 cut(s)	507
MseI	TTAA	1 cut(s)	963
MslI	CAYNNNNRTG	1 cut(s)	809
Msp20I	TGGCCA	1 cut(s)	507
MspA1I	CMGCKG	2 cut(s)	956, 1197
MspI	CCGG	2 cut(s)	572, 830
MspR9I	CCNGG	2 cut(s)	572, 1016
MvaI	CCWGG	1 cut(s)	1016
MwoI	GCNNNNNNNGC	7 cut(s)	178, 184, 521, 598, 850, 1007, 1016
NarI	GGCGCC	1 cut(s)	624
NciI	CCSGG	1 cut(s)	572
NdeI	CATATG	3 cut(s)	46, 331, 1107
NdeII	GATC	2 cut(s)	937, 1063
NlaIII	CATG	5 cut(s)	346, 504, 601, 712, 1043
NlaIV	GGNNCC	5 cut(s)	317, 557, 625, 828, 951
NmeAIII	GCCGAG	2 cut(s)	450, 550
NmuCI	GTSAC	2 cut(s)	862, 976
NsiI	ATGCAT	1 cut(s)	1113
NspI	RCATGY	1 cut(s)	601
OliI	CACNNNNGTG	1 cut(s)	809
PcsI	WCGNNNNNNNCGW	1 cut(s)	624
PfeI	GAWTC	4 cut(s)	4, 190, 613, 647
PkrI	GCNGC	7 cut(s)	180, 623, 752, 835, 843, 899, 902
PleI	GAGTC	2 cut(s)	983, 1139
PluTI	GGCGCC	1 cut(s)	627
PmaCI	CACGTG	2 cut(s)	811, 822
PmlI	CACGTG	2 cut(s)	811, 822
PpsI	GAGTC	2 cut(s)	983, 1139
Ppu21I	YACGTR	2 cut(s)	811, 822
Psp124BI	GAGCTC	1 cut(s)	203
Psp6I	CCWGG	1 cut(s)	1014
PspCI	CACGTG	2 cut(s)	811, 822
PspGI	CCWGG	1 cut(s)	1014
PspN4I	GGNNCC	5 cut(s)	317, 557, 625, 828, 951
PvuII	CAGCTG	2 cut(s)	956, 1197
RsaI	GTAC	2 cut(s)	569, 951
RsaNI	GTAC	2 cut(s)	568, 950
RseI	CAYNNNNRTG	1 cut(s)	809
SacI	GAGCTC	1 cut(s)	203
SaqAI	TTAA	1 cut(s)	963
SatI	GCNGC	7 cut(s)	179, 622, 751, 834, 842, 898, 901
Sau3AI	GATC	2 cut(s)	937, 1063
SchI	GAGTC	2 cut(s)	984, 1139
ScrFI	CCNGG	2 cut(s)	572, 1016
SduI	GDGCHC	3 cut(s)	203, 396, 821
SfaNI	GCATC	1 cut(s)	901
SfoI	GGCGCC	1 cut(s)	625
SmiMI	CAYNNNNRTG	1 cut(s)	809
Sse9I	AATT	4 cut(s)	38, 53, 307, 541
SsiI	CCGC	7 cut(s)	522, 621, 841, 844, 897, 900, 903
SspDI	GGCGCC	1 cut(s)	623
SspMI	CTAG	1 cut(s)	891
SstI	GAGCTC	1 cut(s)	203
StyD4I	CCNGG	2 cut(s)	570, 1014
TaaI	ACNGT	7 cut(s)	147, 704, 728, 868, 927, 1024, 1162
TaiI	ACGT	4 cut(s)	550, 569, 813, 824
TasI	AATT	4 cut(s)	38, 53, 307, 541
TauI	GCSGC	4 cut(s)	624, 844, 900, 903
TfiI	GAWTC	4 cut(s)	4, 190, 613, 647
Tru1I	TTAA	1 cut(s)	963
Tru9I	TTAA	1 cut(s)	963
TscAI	CASTG	5 cut(s)	188, 496, 709, 985, 1039
TseFI	GTSAC	2 cut(s)	862, 976
TseI	GCWGC	3 cut(s)	178, 750, 833
Tsp45I	GTSAC	2 cut(s)	862, 976
TspDTI	ATGAA	3 cut(s)	17, 569, 1101
TspGWI	ACGGA	2 cut(s)	672, 684
TspRI	CASTG	5 cut(s)	188, 496, 709, 985, 1039
VneI	GTGCAC	1 cut(s)	392
XceI	RCATGY	1 cut(s)	601
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1180
XspI	CTAG	1 cut(s)	891
Zsp2I	ATGCAT	1 cut(s)	1113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.