Rroxscaffold_159G00432760

Protein LATERAL ROOT PRIMORDIUM

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000159
OG0002187
Physical Location & Seq
Forward (+)
379543 .. 380713
1171 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_159G00432760.1

Sequence Viewer

Length: 312 bp
ATGCCTGCAGACACATACAGAGATGCAAATCTCAGACAGTCATTACCAGATCAAGTTCGGGTACCAGCTGTTTTTAAGTGCCATAGAGTCACTGCCATTAGCAATGGTGAAGCTGAGATTGCTTACCAGGCTACTGTGAAAATCAGTGGTCATGTATTCAAGGGGTTGCTCTATGATCGTGGGGTTGATAAGAAGAATGAATACCCTTGTATTTCACATATGCATTTGGGAAGTGGTAGTAACCAAAGGAATGGAGACTTTTCTTCTCCAACTGTGCCTCCATCCAATGTCTGTGTGGCGTCCACCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF702

Protein Analysis

103

Amino Acids

11.21

Weight (kDa)

8.52

Isoelectric Point (pI)

35.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF702 PF05142 10 - 63 1.4e-21 Domain of unknown function (DUF702)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 61
AccB1I GGYRCC 1 cut(s) 61
AcyI GRCGYC 1 cut(s) 299
AfaI GTAC 1 cut(s) 63
AgsI TTSAA 1 cut(s) 160
AjnI CCWGG 1 cut(s) 126
AluBI AGCT 3 cut(s) 68, 113, 309
AluI AGCT 3 cut(s) 68, 113, 309
Alw26I GTCTC 1 cut(s) 249
Asp718I GGTACC 1 cut(s) 61
AsuHPI GGTGA 1 cut(s) 119
BanI GGYRCC 1 cut(s) 61
BarI GAAGNNNNNNTAC 2 cut(s) 185, 217
BccI CCATC 1 cut(s) 289
BciT130I CCWGG 1 cut(s) 128
BcoDI GTCTC 1 cut(s) 249
BfmI CTRYAG 1 cut(s) 6
Bme1390I CCNGG 1 cut(s) 128
BmiI GGNNCC 1 cut(s) 63
BmrFI CCNGG 1 cut(s) 128
BmsI GCATC 1 cut(s) 13
BsaBI GATNNNNATC 1 cut(s) 27
BsaHI GRCGYC 1 cut(s) 299
BsaXI ACNNNNNCTCC 2 cut(s) 262, 292
Bse3DI GCAATG 1 cut(s) 109
Bse8I GATNNNNATC 1 cut(s) 27
BseBI CCWGG 1 cut(s) 128
BseGI GGATG 1 cut(s) 281
BseJI GATNNNNATC 1 cut(s) 27
BseMI GCAATG 1 cut(s) 109
BseMII CTCAG 2 cut(s) 46, 105
BshNI GGYRCC 1 cut(s) 61
BsmAI GTCTC 1 cut(s) 249
Bsp143I GATC 2 cut(s) 49, 175
BspCNI CTCAG 2 cut(s) 45, 106
BspLI GGNNCC 1 cut(s) 63
BspMAI CTGCAG 1 cut(s) 10
BspT107I GGYRCC 1 cut(s) 61
BsrDI GCAATG 1 cut(s) 109
BssMI GATC 2 cut(s) 49, 175
BssNI GRCGYC 1 cut(s) 299
Bst2UI CCWGG 1 cut(s) 128
Bst4CI ACNGT 3 cut(s) 39, 136, 274
BstACI GRCGYC 1 cut(s) 299
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 2 cut(s) 32, 114
BstF5I GGATG 1 cut(s) 281
BstKTI GATC 2 cut(s) 52, 178
BstMAI GTCTC 1 cut(s) 249
BstMBI GATC 2 cut(s) 49, 175
BstMWI GCNNNNNNNGC 2 cut(s) 119, 128
BstNI CCWGG 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 126
BstSFI CTRYAG 1 cut(s) 6
BstXI CCANNNNNNTGG 1 cut(s) 251
BtsCI GGATG 1 cut(s) 281
BtsI GCAGTG 1 cut(s) 90
BtsIMutI CAGTG 2 cut(s) 90, 151
Cac8I GCNNGC 1 cut(s) 6
CseI GACGC 1 cut(s) 288
Csp6I GTAC 1 cut(s) 62
CviAII CATG 1 cut(s) 152
CviJI RGCY 4 cut(s) 68, 113, 131, 309
CviKI_1 RGCY 4 cut(s) 68, 113, 131, 309
CviQI GTAC 1 cut(s) 62
DdeI CTNAG 2 cut(s) 32, 114
DpnI GATC 2 cut(s) 51, 177
DpnII GATC 2 cut(s) 49, 175
EcoRII CCWGG 1 cut(s) 126
EcoT22I ATGCAT 1 cut(s) 225
FaeI CATG 1 cut(s) 155
FaiI YATR 6 cut(s) 16, 84, 153, 174, 219, 221
FatI CATG 1 cut(s) 151
FauNDI CATATG 1 cut(s) 219
FokI GGATG 1 cut(s) 268
HgaI GACGC 1 cut(s) 288
Hin1I GRCGYC 1 cut(s) 299
Hin1II CATG 1 cut(s) 155
HinfI GANTC 1 cut(s) 87
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 1 cut(s) 303
Hpy188I TCNGA 1 cut(s) 35
Hpy8I GTNNAC 1 cut(s) 303
HpyCH4III ACNGT 3 cut(s) 39, 136, 274
HpyCH4V TGCA 3 cut(s) 8, 26, 223
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 128
HpyF3I CTNAG 2 cut(s) 32, 114
Hsp92I GRCGYC 1 cut(s) 299
Hsp92II CATG 1 cut(s) 155
KpnI GGTACC 1 cut(s) 65
Kzo9I GATC 2 cut(s) 49, 175
LpnPI CCDG 5 cut(s) 18, 60, 78, 113, 140
LweI GCATC 1 cut(s) 13
MaeIII GTNAC 2 cut(s) 88, 239
MalI GATC 2 cut(s) 51, 177
MboI GATC 2 cut(s) 49, 175
MboII GAAGA 2 cut(s) 205, 255
MlyI GAGTC 1 cut(s) 96
MmeI TCCRAC 1 cut(s) 293
MnlI CCTC 1 cut(s) 288
Mph1103I ATGCAT 1 cut(s) 225
MseI TTAA 1 cut(s) 75
MspA1I CMGCKG 2 cut(s) 68, 309
MspR9I CCNGG 1 cut(s) 128
MvaI CCWGG 1 cut(s) 128
MwoI GCNNNNNNNGC 2 cut(s) 119, 128
NdeI CATATG 1 cut(s) 219
NdeII GATC 2 cut(s) 49, 175
NlaIII CATG 1 cut(s) 155
NlaIV GGNNCC 1 cut(s) 63
NmuCI GTSAC 1 cut(s) 88
NsiI ATGCAT 1 cut(s) 225
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
Psp6I CCWGG 1 cut(s) 126
PspGI CCWGG 1 cut(s) 126
PspN4I GGNNCC 1 cut(s) 63
PstI CTGCAG 1 cut(s) 10
PvuII CAGCTG 2 cut(s) 68, 309
RsaI GTAC 1 cut(s) 63
RsaNI GTAC 1 cut(s) 62
SaqAI TTAA 1 cut(s) 75
Sau3AI GATC 2 cut(s) 49, 175
SchI GAGTC 1 cut(s) 96
ScrFI CCNGG 1 cut(s) 128
SetI ASST 3 cut(s) 70, 115, 311
SfaNI GCATC 1 cut(s) 13
SfcI CTRYAG 1 cut(s) 6
StyD4I CCNGG 1 cut(s) 126
TaaI ACNGT 3 cut(s) 39, 136, 274
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TscAI CASTG 2 cut(s) 97, 151
TseFI GTSAC 1 cut(s) 88
Tsp45I GTSAC 1 cut(s) 88
TspDTI ATGAA 1 cut(s) 213
TspRI CASTG 2 cut(s) 97, 151
XcmI CCANNNNNNNNNTGG 1 cut(s) 292
Zsp2I ATGCAT 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.