Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004082.1

Orthogroup ID

OG0002187

Physical Location & Seq

Genomic Coordinates Reverse (-)

84191 .. 84844

Gene Structure 654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004082.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

atgttgggtctgagagatatcctcctgattgctccaaaccattcttctgtgcaccaacaaaaccaacccatttcctctgaccacccagctctccctcttccttcctccacagctcttggggttggcctcggtattttccctctcctcactgcaaccccatgtggccaaaatgctccgaccgccgacggcaatccggacaattcacgtttctggagcctgagaacgtacccggagctgaattcttccaagcaagacatgctcagttttgggaatcacggcgccgccgaaagtcaacaggtggcggaatccgatgacggaaatgtgaacggagaaggtggtggtcgtggcggtgaagacagtggcatgagggcttgcaaggactgtgggaacagagccaagaaaggctgcgagtattcaaggtgcaggacttgctgcagaggcaggggatatgactgctccactcacgtgaggagcacgtgggttccggcagcgaggcggcgggaaaggcagatgggggtgaccgttgctgttgctggtggtgttgctagtggcggcggcggtgaaggtgacagtagaagttttgtaaatatacatctgcagaccactaatagattaggttggtcccataacttagttagtaggctatgcctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF702

Protein Analysis

217

Amino Acids

23.01

Weight (kDa)

8.42

Isoelectric Point (pI)

51.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54430
fragaria_vesca	FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110
malus_domestica	MD02G1285800.v1.1
prunus_persica	Prupe.2G036500_v2.0.a1 Prupe.2G036500_v2.0.a1 Prupe.2G036500_v2.0.a1 Prupe.2G036500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0319531 RchiOBHm_Chr1g0324311
rosa_laevigata	RLG00000008631 RLG00000017375 RLG00000030203 RLG00000033698
rosa_multiflora	Rmu_sc0004082.1_g000006 Rmu_sc0004082.1_g000019 Rmu_sc0004082.1_g000020
rosa_roxburghii	Rroxscaffold_159G00432690 Rroxscaffold_159G00432760 Rroxscaffold_159G00432820 Rroxscaffold_4G00325640 Rroxscaffold_4G00325700
rosa_rugosa	Rorug01G0045000 Rorug01G0045100 Rorug01G0045200 Rorug01G0045300 Rorug01G0045400 Rorug01G0045500
rosa_samantha	Rh1AG061000 Rh1BG052100 Rh1CG063200 Rh1DG067600 Rh6AG126800 Rh6CG264300 Rh7CG487400
rosa_wichuraiana	Rw1G005190 Rw4G000540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	278
AccIII	TCCGGA	1 cut(s)	193
AciI	CCGC	9 cut(s)	180, 282, 302, 348, 496, 499, 552, 555, 558
AcoI	YGGCCR	1 cut(s)	163
AcsI	RAATTY	1 cut(s)	238
AcvI	CACGTG	2 cut(s)	466, 477
AcyI	GRCGYC	1 cut(s)	279
AfaI	GTAC	1 cut(s)	227
AgsI	TTSAA	1 cut(s)	417
AjuI	GAANNNNNNNTTGG	2 cut(s)	28, 60
AleI	CACNNNNGTG	1 cut(s)	464
AluBI	AGCT	3 cut(s)	89, 113, 235
AluI	AGCT	3 cut(s)	89, 113, 235
Alw21I	GWGCWC	2 cut(s)	54, 476
Alw44I	GTGCAC	1 cut(s)	50
Aor13HI	TCCGGA	1 cut(s)	193
AoxI	GGCC	2 cut(s)	124, 163
ApaLI	GTGCAC	1 cut(s)	50
ApeKI	GCWGC	3 cut(s)	405, 432, 488
ApoI	RAATTY	1 cut(s)	238
AspLEI	GCGC	1 cut(s)	281
AspS9I	GGNCC	1 cut(s)	621
AsuC2I	CCSGG	1 cut(s)	230
AsuHPI	GGTGA	4 cut(s)	362, 529, 572, 578
AvaII	GGWCC	1 cut(s)	621
BaeGI	GKGCMC	1 cut(s)	54
BalI	TGGCCA	1 cut(s)	165
BanI	GGYRCC	1 cut(s)	278
BbrPI	CACGTG	2 cut(s)	466, 477
BbsI	GAAGAC	1 cut(s)	360
Bbv12I	GWGCWC	2 cut(s)	54, 476
BbvI	GCAGC	3 cut(s)	392, 419, 500
BccI	CCATC	1 cut(s)	505
BceAI	ACGGC	2 cut(s)	202, 292
BcnI	CCSGG	1 cut(s)	230
BfaI	CTAG	1 cut(s)	546
BfmI	CTRYAG	2 cut(s)	433, 596
BfoI	RGCGCY	1 cut(s)	282
BisI	GCNGC	7 cut(s)	282, 406, 433, 489, 497, 553, 556
BlsI	GCNGC	7 cut(s)	283, 407, 434, 490, 498, 554, 557
Bme1390I	CCNGG	1 cut(s)	230
Bme18I	GGWCC	1 cut(s)	621
BmgT120I	GGNCC	1 cut(s)	621
BmiI	GGNNCC	4 cut(s)	215, 280, 483, 623
BmrFI	CCNGG	1 cut(s)	230
BpiI	GAAGAC	1 cut(s)	360
BplI	GAGNNNNNCTC	1 cut(s)	38
BpmI	CTGGAG	1 cut(s)	232
BpuMI	CCSGG	1 cut(s)	230
BsaAI	YACGTR	2 cut(s)	466, 477
BsaHI	GRCGYC	1 cut(s)	279
BsaJI	CCNNGG	1 cut(s)	127
BsaWI	WCCGGW	1 cut(s)	193
BseAI	TCCGGA	1 cut(s)	193
BseDI	CCNNGG	1 cut(s)	127
BseMII	CTCAG	2 cut(s)	209, 274
BseRI	GAGGAG	2 cut(s)	134, 484
BseSI	GKGCMC	1 cut(s)	54
BseXI	GCAGC	3 cut(s)	392, 419, 500
BseYI	CCCAGC	1 cut(s)	85
BsgI	GTGCAG	1 cut(s)	442
Bsh1285I	CGRYCG	1 cut(s)	180
BshFI	GGCC	2 cut(s)	126, 165
BshNI	GGYRCC	1 cut(s)	278
BsiEI	CGRYCG	1 cut(s)	180
BsiHKAI	GWGCWC	2 cut(s)	54, 476
BsiSI	CCGG	3 cut(s)	194, 230, 485
BslFI	GGGAC	1 cut(s)	607
BsmFI	GGGAC	1 cut(s)	607
BsnI	GGCC	2 cut(s)	126, 165
Bsp1286I	GDGCHC	2 cut(s)	54, 476
Bsp13I	TCCGGA	1 cut(s)	193
BspACI	CCGC	9 cut(s)	180, 282, 302, 348, 496, 499, 552, 555, 558
BspANI	GGCC	2 cut(s)	126, 165
BspCNI	CTCAG	2 cut(s)	210, 273
BspEI	TCCGGA	1 cut(s)	193
BspLI	GGNNCC	4 cut(s)	215, 280, 483, 623
BspMAI	CTGCAG	2 cut(s)	437, 600
BspT107I	GGYRCC	1 cut(s)	278
BssECI	CCNNGG	1 cut(s)	127
BssNI	GRCGYC	1 cut(s)	279
Bst4CI	ACNGT	4 cut(s)	359, 383, 523, 572
Bst6I	CTCTTC	1 cut(s)	102
BstACI	GRCGYC	1 cut(s)	279
BstAPI	GCANNNNNTGC	2 cut(s)	256, 429
BstBAI	YACGTR	2 cut(s)	466, 477
BstC8I	GCNNGC	1 cut(s)	373
BstDEI	CTNAG	4 cut(s)	11, 218, 260, 631
BstEII	GGTNACC	1 cut(s)	517
BstH2I	RGCGCY	1 cut(s)	282
BstHHI	GCGC	1 cut(s)	281
BstMCI	CGRYCG	1 cut(s)	180
BstMWI	GCNNNNNNNGC	5 cut(s)	179, 256, 429, 438, 505
BstNSI	RCATGY	1 cut(s)	259
BstPI	GGTNACC	1 cut(s)	517
BstSCI	CCNGG	1 cut(s)	228
BstSFI	CTRYAG	2 cut(s)	433, 596
BstSLI	GKGCMC	1 cut(s)	54
BstV1I	GCAGC	3 cut(s)	392, 419, 500
BstV2I	GAAGAC	1 cut(s)	360
BsuRI	GGCC	2 cut(s)	126, 165
BtsI	GCAGTG	1 cut(s)	147
BtsIMutI	CAGTG	2 cut(s)	147, 364
Cac8I	GCNNGC	1 cut(s)	373
CfoI	GCGC	1 cut(s)	281
Cfr13I	GGNCC	1 cut(s)	621
Csp6I	GTAC	1 cut(s)	226
CspCI	CAANNNNNGTGG	4 cut(s)	97, 132, 364, 399
CviAII	CATG	3 cut(s)	159, 256, 364
CviQI	GTAC	1 cut(s)	226
DdeI	CTNAG	4 cut(s)	11, 218, 260, 631
DinI	GGCGCC	1 cut(s)	280
EaeI	YGGCCR	1 cut(s)	163
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
EciI	GGCGGA	1 cut(s)	317
Eco32I	GATATC	1 cut(s)	19
Eco47I	GGWCC	1 cut(s)	621
Eco72I	CACGTG	2 cut(s)	466, 477
Eco91I	GGTNACC	1 cut(s)	517
EcoO65I	GGTNACC	1 cut(s)	517
EcoRI	GAATTC	1 cut(s)	238
EcoRV	GATATC	1 cut(s)	19
EgeI	GGCGCC	1 cut(s)	280
EheI	GGCGCC	1 cut(s)	280
FaeI	CATG	3 cut(s)	162, 259, 367
FaiI	YATR	7 cut(s)	160, 257, 365, 450, 590, 627, 646
FaqI	GGGAC	1 cut(s)	607
FatI	CATG	3 cut(s)	158, 255, 363
FauI	CCCGC	1 cut(s)	492
Fnu4HI	GCNGC	7 cut(s)	282, 406, 433, 489, 497, 553, 556
Fsp4HI	GCNGC	7 cut(s)	282, 406, 433, 489, 497, 553, 556
FspBI	CTAG	1 cut(s)	546
GlaI	GCGC	1 cut(s)	280
GluI	GCNGC	7 cut(s)	282, 406, 433, 489, 497, 553, 556
GsaI	CCCAGC	1 cut(s)	89
GsuI	CTGGAG	1 cut(s)	232
HaeII	RGCGCY	1 cut(s)	282
HaeIII	GGCC	2 cut(s)	126, 165
HapII	CCGG	3 cut(s)	194, 230, 485
HhaI	GCGC	1 cut(s)	281
Hin1I	GRCGYC	1 cut(s)	279
Hin1II	CATG	3 cut(s)	162, 259, 367
Hin6I	GCGC	1 cut(s)	279
HinP1I	GCGC	1 cut(s)	279
HincII	GTYRAC	1 cut(s)	293
HindII	GTYRAC	1 cut(s)	293
HinfI	GANTC	2 cut(s)	271, 305
HpaII	CCGG	3 cut(s)	194, 230, 485
HphI	GGTGA	4 cut(s)	362, 529, 572, 578
Hpy166II	GTNNAC	3 cut(s)	52, 293, 325
Hpy188I	TCNGA	4 cut(s)	12, 79, 177, 310
Hpy188III	TCNNGA	3 cut(s)	25, 194, 211
Hpy8I	GTNNAC	3 cut(s)	52, 293, 325
Hpy99I	CGWCG	1 cut(s)	188
HpyAV	CCTTC	3 cut(s)	111, 326, 557
HpyCH4III	ACNGT	4 cut(s)	359, 383, 523, 572
HpyCH4IV	ACGT	4 cut(s)	205, 224, 465, 476
HpyCH4V	TGCA	6 cut(s)	52, 152, 375, 423, 435, 598
HpyF10VI	GCNNNNNNNGC	5 cut(s)	179, 256, 429, 438, 505
HpyF3I	CTNAG	4 cut(s)	11, 218, 260, 631
HpySE526I	ACGT	4 cut(s)	205, 224, 465, 476
Hsp92I	GRCGYC	1 cut(s)	279
Hsp92II	CATG	3 cut(s)	162, 259, 367
HspAI	GCGC	1 cut(s)	279
KasI	GGCGCC	1 cut(s)	278
Kpn2I	TCCGGA	1 cut(s)	193
LmnI	GCTCC	6 cut(s)	37, 178, 213, 232, 461, 471
Lsp1109I	GCAGC	3 cut(s)	392, 419, 500
MaeI	CTAG	1 cut(s)	546
MaeII	ACGT	4 cut(s)	205, 224, 465, 476
MaeIII	GTNAC	2 cut(s)	517, 566
MboII	GAAGA	4 cut(s)	36, 89, 234, 365
MhlI	GDGCHC	2 cut(s)	54, 476
MlsI	TGGCCA	1 cut(s)	165
MluCI	AATT	2 cut(s)	199, 238
MluNI	TGGCCA	1 cut(s)	165
Mly113I	GGCGCC	1 cut(s)	279
MmeI	TCCRAC	1 cut(s)	200
Mox20I	TGGCCA	1 cut(s)	165
MroI	TCCGGA	1 cut(s)	193
MscI	TGGCCA	1 cut(s)	165
MslI	CAYNNNNRTG	1 cut(s)	464
Msp20I	TGGCCA	1 cut(s)	165
MspI	CCGG	3 cut(s)	194, 230, 485
MspR9I	CCNGG	1 cut(s)	230
MwoI	GCNNNNNNNGC	5 cut(s)	179, 256, 429, 438, 505
NarI	GGCGCC	1 cut(s)	279
NciI	CCSGG	1 cut(s)	230
NlaIII	CATG	3 cut(s)	162, 259, 367
NlaIV	GGNNCC	4 cut(s)	215, 280, 483, 623
NmuCI	GTSAC	2 cut(s)	517, 566
NspI	RCATGY	1 cut(s)	259
OliI	CACNNNNGTG	1 cut(s)	464
PcsI	WCGNNNNNNNCGW	1 cut(s)	282
PfeI	GAWTC	2 cut(s)	271, 305
PkrI	GCNGC	7 cut(s)	283, 407, 434, 490, 498, 554, 557
PluTI	GGCGCC	1 cut(s)	282
PmaCI	CACGTG	2 cut(s)	466, 477
PmlI	CACGTG	2 cut(s)	466, 477
Ppu21I	YACGTR	2 cut(s)	466, 477
PspCI	CACGTG	2 cut(s)	466, 477
PspEI	GGTNACC	1 cut(s)	517
PspFI	CCCAGC	1 cut(s)	85
PspN4I	GGNNCC	4 cut(s)	215, 280, 483, 623
PspPI	GGNCC	1 cut(s)	621
PstI	CTGCAG	2 cut(s)	437, 600
RsaI	GTAC	1 cut(s)	227
RsaNI	GTAC	1 cut(s)	226
RseI	CAYNNNNRTG	1 cut(s)	464
SatI	GCNGC	7 cut(s)	282, 406, 433, 489, 497, 553, 556
Sau96I	GGNCC	1 cut(s)	621
ScrFI	CCNGG	1 cut(s)	230
SduI	GDGCHC	2 cut(s)	54, 476
SfcI	CTRYAG	2 cut(s)	433, 596
SfoI	GGCGCC	1 cut(s)	280
SinI	GGWCC	1 cut(s)	621
SmiMI	CAYNNNNRTG	1 cut(s)	464
Sse9I	AATT	2 cut(s)	199, 238
SsiI	CCGC	9 cut(s)	180, 282, 302, 348, 496, 499, 552, 555, 558
SspDI	GGCGCC	1 cut(s)	278
SspMI	CTAG	1 cut(s)	546
StyD4I	CCNGG	1 cut(s)	228
TaaI	ACNGT	4 cut(s)	359, 383, 523, 572
TaiI	ACGT	4 cut(s)	208, 227, 468, 479
TasI	AATT	2 cut(s)	199, 238
TauI	GCSGC	4 cut(s)	284, 499, 555, 558
TfiI	GAWTC	2 cut(s)	271, 305
TscAI	CASTG	2 cut(s)	154, 364
TseFI	GTSAC	2 cut(s)	517, 566
TseI	GCWGC	3 cut(s)	405, 432, 488
Tsp45I	GTSAC	2 cut(s)	517, 566
TspGWI	ACGGA	2 cut(s)	330, 342
TspRI	CASTG	2 cut(s)	154, 364
VneI	GTGCAC	1 cut(s)	50
VpaK11BI	GGWCC	1 cut(s)	621
XapI	RAATTY	1 cut(s)	238
XceI	RCATGY	1 cut(s)	259
XspI	CTAG	1 cut(s)	546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.