Rh6AG126800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002187
Physical Location & Seq
Forward (+)
19153060 .. 19153491
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG126800.1

Sequence Viewer

Length: 432 bp
ATGGGCATTCGGTGCTCCTCTGAGTCTCCGGCGATGGGTTATGGTGGCCTTCCTCCGGCTTGCAGTGTTGTGGGTCGAGATCTAGCATGGTTTATGGAGTGCTCTGGTGGTTGGGCTGTGGGGGAATCGACTTGCTTCCCTCCTGTGTCTGCCGGCGTTAGATCTGGAGCTTTATTTGATGTGTGGCGGTGGCGCGTGCTGCGGCCAGGTGATGATGGCGGTATAATCGGCGAGGGGGCTATCGGTTCTGATGCATATTCCTCTCATGGAGGGTTGCAGATATACGGCTGCACACATGATGGCTCAGGTGCAATTAGGGTCAAGGTCACTGGAAGAGCATGTTTGCTCCCGGCGGCAGCGGTATTTTTCTGGGTGGTGACCCCGGCGGTGGTAGGCATGACAGAGGAGACGACGGGATGCATGGCCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

14.73

Weight (kDa)

5.21

Isoelectric Point (pI)

56.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 195
AciI CCGC 6 cut(s) 187, 202, 219, 353, 359, 386
AcoI YGGCCR 1 cut(s) 203
AfiI CCNNNNNNNGG 3 cut(s) 35, 55, 388
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 1 cut(s) 170
AluI AGCT 1 cut(s) 170
Alw21I GWGCWC 2 cut(s) 17, 104
Alw26I GTCTC 2 cut(s) 30, 401
AoxI GGCC 3 cut(s) 46, 203, 423
ApeKI GCWGC 3 cut(s) 199, 288, 356
AspLEI GCGC 1 cut(s) 195
AsuC2I CCSGG 2 cut(s) 350, 383
AsuHPI GGTGA 2 cut(s) 221, 388
Bbv12I GWGCWC 2 cut(s) 17, 104
BbvI GCAGC 3 cut(s) 186, 275, 368
BccI CCATC 3 cut(s) 28, 209, 293
BceAI ACGGC 1 cut(s) 301
BciT130I CCWGG 1 cut(s) 207
BcnI CCSGG 2 cut(s) 350, 383
BcoDI GTCTC 2 cut(s) 30, 401
BfaI CTAG 1 cut(s) 83
BglII AGATCT 2 cut(s) 79, 161
BisI GCNGC 5 cut(s) 200, 203, 289, 354, 357
BlsI GCNGC 5 cut(s) 201, 204, 290, 355, 358
Bme1390I CCNGG 3 cut(s) 207, 350, 383
BmrFI CCNGG 3 cut(s) 207, 350, 383
BmsI GCATC 2 cut(s) 241, 407
BpmI CTGGAG 1 cut(s) 186
Bpu10I CCTNAGC 1 cut(s) 304
BpuMI CCSGG 2 cut(s) 350, 383
BsaJI CCNNGG 1 cut(s) 381
Bsc4I CCNNNNNNNGG 3 cut(s) 35, 55, 388
Bse118I RCCGGY 1 cut(s) 152
Bse1I ACTGG 1 cut(s) 334
BseBI CCWGG 1 cut(s) 207
BseDI CCNNGG 1 cut(s) 381
BseGI GGATG 1 cut(s) 422
BseLI CCNNNNNNNGG 3 cut(s) 35, 55, 388
BseMII CTCAG 2 cut(s) 12, 318
BseNI ACTGG 1 cut(s) 334
BseRI GAGGAG 2 cut(s) 7, 419
BseXI GCAGC 3 cut(s) 186, 275, 368
BsgI GTGCAG 1 cut(s) 274
Bsh1236I CGCG 1 cut(s) 195
BshFI GGCC 3 cut(s) 48, 205, 425
BsiHKAI GWGCWC 2 cut(s) 17, 104
BsiSI CCGG 5 cut(s) 29, 56, 153, 350, 383
BslI CCNNNNNNNGG 3 cut(s) 35, 55, 388
BsmAI GTCTC 2 cut(s) 30, 401
BsmBI CGTCTC 1 cut(s) 401
BsmI GAATGC 1 cut(s) 6
BsnI GGCC 3 cut(s) 48, 205, 425
Bsp1286I GDGCHC 2 cut(s) 17, 104
Bsp143I GATC 2 cut(s) 79, 161
BspACI CCGC 6 cut(s) 187, 202, 219, 353, 359, 386
BspANI GGCC 3 cut(s) 48, 205, 425
BspCNI CTCAG 2 cut(s) 13, 317
BspFNI CGCG 1 cut(s) 195
BspQI GCTCTTC 1 cut(s) 328
BsrFI RCCGGY 1 cut(s) 152
BsrI ACTGG 1 cut(s) 334
BssAI RCCGGY 1 cut(s) 152
BssECI CCNNGG 1 cut(s) 381
BssMI GATC 2 cut(s) 79, 161
Bst2UI CCWGG 1 cut(s) 207
Bst6I CTCTTC 1 cut(s) 328
BstAPI GCANNNNNTGC 1 cut(s) 12
BstC8I GCNNGC 3 cut(s) 61, 154, 197
BstDEI CTNAG 2 cut(s) 21, 304
BstEII GGTNACC 1 cut(s) 376
BstF5I GGATG 1 cut(s) 422
BstFNI CGCG 1 cut(s) 195
BstHHI GCGC 1 cut(s) 195
BstKTI GATC 2 cut(s) 82, 164
BstMAI GTCTC 2 cut(s) 30, 401
BstMBI GATC 2 cut(s) 79, 161
BstMWI GCNNNNNNNGC 2 cut(s) 12, 199
BstNI CCWGG 1 cut(s) 207
BstNSI RCATGY 1 cut(s) 342
BstPI GGTNACC 1 cut(s) 376
BstSCI CCNGG 3 cut(s) 205, 348, 381
BstUI CGCG 1 cut(s) 195
BstV1I GCAGC 3 cut(s) 186, 275, 368
BstX2I RGATCY 2 cut(s) 79, 161
BstYI RGATCY 2 cut(s) 79, 161
BsuRI GGCC 3 cut(s) 48, 205, 425
BtgZI GCGATG 1 cut(s) 47
BtsCI GGATG 1 cut(s) 422
BtsI GCAGTG 1 cut(s) 70
BtsIMutI CAGTG 2 cut(s) 70, 327
Cac8I GCNNGC 3 cut(s) 61, 154, 197
CfoI GCGC 1 cut(s) 195
Cfr10I RCCGGY 1 cut(s) 152
CviAII CATG 6 cut(s) 87, 266, 296, 339, 397, 421
CviJI RGCY 9 cut(s) 48, 59, 116, 170, 205, 239, 288, 303, 425
CviKI_1 RGCY 9 cut(s) 48, 59, 116, 170, 205, 239, 288, 303, 425
DdeI CTNAG 2 cut(s) 21, 304
DpnI GATC 2 cut(s) 81, 163
DpnII GATC 2 cut(s) 79, 161
EaeI YGGCCR 1 cut(s) 203
Eam1104I CTCTTC 1 cut(s) 328
EarI CTCTTC 1 cut(s) 328
Eco91I GGTNACC 1 cut(s) 376
EcoO65I GGTNACC 1 cut(s) 376
EcoRII CCWGG 1 cut(s) 205
EcoT22I ATGCAT 2 cut(s) 256, 422
Esp3I CGTCTC 1 cut(s) 401
FaeI CATG 6 cut(s) 90, 269, 299, 342, 400, 424
FatI CATG 6 cut(s) 86, 265, 295, 338, 396, 420
Fnu4HI GCNGC 5 cut(s) 200, 203, 289, 354, 357
Fsp4HI GCNGC 5 cut(s) 200, 203, 289, 354, 357
FspBI CTAG 1 cut(s) 83
GlaI GCGC 1 cut(s) 194
GluI GCNGC 5 cut(s) 200, 203, 289, 354, 357
GsuI CTGGAG 1 cut(s) 186
HaeIII GGCC 3 cut(s) 48, 205, 425
HapII CCGG 5 cut(s) 29, 56, 153, 350, 383
HhaI GCGC 1 cut(s) 195
Hin1II CATG 6 cut(s) 90, 269, 299, 342, 400, 424
Hin6I GCGC 1 cut(s) 193
HinP1I GCGC 1 cut(s) 193
HinfI GANTC 2 cut(s) 23, 125
HpaII CCGG 5 cut(s) 29, 56, 153, 350, 383
HphI GGTGA 2 cut(s) 221, 388
Hpy188I TCNGA 2 cut(s) 22, 250
Hpy188III TCNNGA 2 cut(s) 77, 165
Hpy99I CGWCG 1 cut(s) 415
HpyAV CCTTC 1 cut(s) 59
HpyCH4V TGCA 6 cut(s) 63, 254, 277, 291, 311, 420
HpyF10VI GCNNNNNNNGC 2 cut(s) 12, 199
HpyF3I CTNAG 2 cut(s) 21, 304
Hsp92II CATG 6 cut(s) 90, 269, 299, 342, 400, 424
HspAI GCGC 1 cut(s) 193
KroI GCCGGC 1 cut(s) 152
KroNI GCCGGC 1 cut(s) 154
Kzo9I GATC 2 cut(s) 79, 161
LguI GCTCTTC 1 cut(s) 328
LmnI GCTCC 3 cut(s) 20, 167, 351
Lsp1109I GCAGC 3 cut(s) 186, 275, 368
LweI GCATC 2 cut(s) 241, 407
MaeI CTAG 1 cut(s) 83
MaeIII GTNAC 2 cut(s) 325, 376
MalI GATC 2 cut(s) 81, 163
MboI GATC 2 cut(s) 79, 161
MboII GAAGA 1 cut(s) 345
MflI RGATCY 2 cut(s) 79, 161
MhlI GDGCHC 2 cut(s) 17, 104
MluCI AATT 1 cut(s) 312
MlyI GAGTC 1 cut(s) 32
MnlI CCTC 7 cut(s) 28, 63, 150, 226, 263, 271, 397
Mph1103I ATGCAT 2 cut(s) 256, 422
MroNI GCCGGC 1 cut(s) 152
MspA1I CMGCKG 1 cut(s) 359
MspI CCGG 5 cut(s) 29, 56, 153, 350, 383
MspR9I CCNGG 3 cut(s) 207, 350, 383
Mva1269I GAATGC 1 cut(s) 6
MvaI CCWGG 1 cut(s) 207
MvnI CGCG 1 cut(s) 195
MwoI GCNNNNNNNGC 2 cut(s) 12, 199
NaeI GCCGGC 1 cut(s) 154
NciI CCSGG 2 cut(s) 350, 383
NdeII GATC 2 cut(s) 79, 161
NgoMIV GCCGGC 1 cut(s) 152
NlaIII CATG 6 cut(s) 90, 269, 299, 342, 400, 424
NmuCI GTSAC 2 cut(s) 325, 376
NsiI ATGCAT 2 cut(s) 256, 422
NspI RCATGY 1 cut(s) 342
PciSI GCTCTTC 1 cut(s) 328
PctI GAATGC 1 cut(s) 6
PdiI GCCGGC 1 cut(s) 154
PfeI GAWTC 1 cut(s) 125
PkrI GCNGC 5 cut(s) 201, 204, 290, 355, 358
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
Psp6I CCWGG 1 cut(s) 205
PspEI GGTNACC 1 cut(s) 376
PspGI CCWGG 1 cut(s) 205
PsuI RGATCY 2 cut(s) 79, 161
SapI GCTCTTC 1 cut(s) 328
SatI GCNGC 5 cut(s) 200, 203, 289, 354, 357
Sau3AI GATC 2 cut(s) 79, 161
SchI GAGTC 1 cut(s) 32
ScrFI CCNGG 3 cut(s) 207, 350, 383
SduI GDGCHC 2 cut(s) 17, 104
SetI ASST 4 cut(s) 172, 211, 310, 327
SfaNI GCATC 2 cut(s) 241, 407
Sse9I AATT 1 cut(s) 312
SsiI CCGC 6 cut(s) 187, 202, 219, 353, 359, 386
SspMI CTAG 1 cut(s) 83
StyD4I CCNGG 3 cut(s) 205, 348, 381
TaqI TCGA 2 cut(s) 76, 128
TasI AATT 1 cut(s) 312
TauI GCSGC 2 cut(s) 205, 356
TfiI GAWTC 1 cut(s) 125
TscAI CASTG 2 cut(s) 70, 334
TseFI GTSAC 2 cut(s) 325, 376
TseI GCWGC 3 cut(s) 199, 288, 356
Tsp45I GTSAC 2 cut(s) 325, 376
TspRI CASTG 2 cut(s) 70, 334
XceI RCATGY 1 cut(s) 342
XspI CTAG 1 cut(s) 83
Zsp2I ATGCAT 2 cut(s) 256, 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.