Rh1AG061000

Protein LATERAL ROOT PRIMORDIUM

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0002187
Physical Location & Seq
Forward (+)
10037058 .. 10039312
2255 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG061000.1

Sequence Viewer

Length: 810 bp
ATGTTGGGTCTGAGAGATATCCTCCTGATTGCTCCAAACCATTCTTCTGTGCACCAACAAAACCAACCCATTTCCTCTGACCACCCAACTCTCCCTCTTCCTTCCTCCACAGCTCTTGGGGTTGGCCTCGGTATTTTCCCTCTCCTCACTGCAACCCCATGTGGCCAAAATGCTCCGACCGCCGAGGGCAATCCGGACAATTCACGTTTCTGGAGCCTGAGAACGTACCCGGAGCTGAATTCTTCCAAGCAAGACATGCTCAGTTTTGGGAATCACGGCGGCGCCGAAAGTCAACATGTGGCGGAATCCGATGACGGAAATGTGAACGGAGAAGGTCGTGGTCGTGGCGGTGAAGACAGTGGCATGAGGGCTTGCAAGGACTGTGGGAACAGAGCCAAGAAAGGCTGCGAGTATTCAAGGTGCAGGACTTGTTGCAGAGGCAGGGGATATGACTGCTCCACTCACGTGAGGAGCACGTGGGTTCCAGCAGCGAGGCGGCGGGAAAGGCAGATGGGGGTGACCGTTGCTGTTGCTGGTGGTGTTGCTAGTGGCGGCGGCGGTGAAGGTTCTTCCGGTTCTTCTTCCGTTGCCAAAAGACCAAGAGTAATGATGCCATCAAAGAATGCAAATACAAATCTCAGACAGTCATTACCAGATCAAGTTCGGGTACCAGCTGTTTTTAAGTGCCATAGAGTCACTGCCATTAGCAATGTGGTAGTAACCAAAGGAATGGAGACTCTTCTTCTCCAACTGTGCCTCCATCCAATGTCTGTGTGGCGTCCACCAGCTGAAGGTTGTTTAGAGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF702

Protein Analysis

269

Amino Acids

28.69

Weight (kDa)

9.17

Isoelectric Point (pI)

48.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF702 PF05142 123 - 237 2.3e-38 Domain of unknown function (DUF702)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 667
AccB1I GGYRCC 2 cut(s) 281, 667
AccIII TCCGGA 1 cut(s) 193
AciI CCGC 9 cut(s) 180, 279, 302, 348, 496, 499, 552, 555, 558
AcoI YGGCCR 1 cut(s) 163
AcsI RAATTY 1 cut(s) 238
AcuI CTGAAG 1 cut(s) 810
AcvI CACGTG 2 cut(s) 466, 477
AcyI GRCGYC 2 cut(s) 282, 778
AfaI GTAC 2 cut(s) 227, 669
AfiI CCNNNNNNNGG 1 cut(s) 791
AflIII ACRYGT 1 cut(s) 295
AgsI TTSAA 1 cut(s) 417
AjuI GAANNNNNNNTTGG 2 cut(s) 28, 60
AleI CACNNNNGTG 1 cut(s) 464
AluBI AGCT 4 cut(s) 113, 235, 674, 788
AluI AGCT 4 cut(s) 113, 235, 674, 788
Alw21I GWGCWC 2 cut(s) 54, 476
Alw26I GTCTC 1 cut(s) 728
Alw44I GTGCAC 1 cut(s) 50
Aor13HI TCCGGA 1 cut(s) 193
AoxI GGCC 2 cut(s) 124, 163
ApaLI GTGCAC 1 cut(s) 50
ApeKI GCWGC 2 cut(s) 405, 488
ApoI RAATTY 1 cut(s) 238
Asp718I GGTACC 1 cut(s) 667
AspLEI GCGC 1 cut(s) 284
AsuC2I CCSGG 1 cut(s) 230
AsuHPI GGTGA 3 cut(s) 362, 529, 572
BaeGI GKGCMC 1 cut(s) 54
BalI TGGCCA 1 cut(s) 165
BanI GGYRCC 2 cut(s) 281, 667
BbrPI CACGTG 2 cut(s) 466, 477
BbsI GAAGAC 1 cut(s) 360
Bbv12I GWGCWC 2 cut(s) 54, 476
BbvI GCAGC 2 cut(s) 392, 500
BccI CCATC 3 cut(s) 505, 622, 768
BceAI ACGGC 1 cut(s) 292
BcnI CCSGG 1 cut(s) 230
BcoDI GTCTC 1 cut(s) 728
BfaI CTAG 1 cut(s) 546
BfoI RGCGCY 1 cut(s) 285
BisI GCNGC 6 cut(s) 280, 406, 489, 497, 553, 556
BlsI GCNGC 6 cut(s) 281, 407, 490, 498, 554, 557
Bme1390I CCNGG 1 cut(s) 230
BmiI GGNNCC 4 cut(s) 215, 283, 483, 669
BmrFI CCNGG 1 cut(s) 230
BmsI GCATC 1 cut(s) 600
BpiI GAAGAC 1 cut(s) 360
BplI GAGNNNNNCTC 1 cut(s) 38
BpmI CTGGAG 1 cut(s) 232
BpuMI CCSGG 1 cut(s) 230
BsaAI YACGTR 2 cut(s) 466, 477
BsaHI GRCGYC 2 cut(s) 282, 778
BsaJI CCNNGG 2 cut(s) 127, 183
BsaWI WCCGGW 2 cut(s) 193, 572
BsaXI ACNNNNNCTCC 2 cut(s) 741, 771
Bsc4I CCNNNNNNNGG 1 cut(s) 791
Bse3DI GCAATG 1 cut(s) 715
BseAI TCCGGA 1 cut(s) 193
BseDI CCNNGG 2 cut(s) 127, 183
BseGI GGATG 1 cut(s) 760
BseLI CCNNNNNNNGG 1 cut(s) 791
BseMI GCAATG 1 cut(s) 715
BseMII CTCAG 3 cut(s) 209, 274, 652
BseRI GAGGAG 2 cut(s) 134, 484
BseSI GKGCMC 1 cut(s) 54
BseXI GCAGC 2 cut(s) 392, 500
BsgI GTGCAG 1 cut(s) 442
Bsh1285I CGRYCG 1 cut(s) 180
BshFI GGCC 2 cut(s) 126, 165
BshNI GGYRCC 2 cut(s) 281, 667
BsiEI CGRYCG 1 cut(s) 180
BsiHKAI GWGCWC 2 cut(s) 54, 476
BsiSI CCGG 3 cut(s) 194, 230, 573
BslI CCNNNNNNNGG 1 cut(s) 791
BsmAI GTCTC 1 cut(s) 728
BsmI GAATGC 1 cut(s) 628
BsnI GGCC 2 cut(s) 126, 165
Bsp1286I GDGCHC 2 cut(s) 54, 476
Bsp13I TCCGGA 1 cut(s) 193
Bsp143I GATC 1 cut(s) 655
BspACI CCGC 9 cut(s) 180, 279, 302, 348, 496, 499, 552, 555, 558
BspANI GGCC 2 cut(s) 126, 165
BspCNI CTCAG 3 cut(s) 210, 273, 651
BspEI TCCGGA 1 cut(s) 193
BspLI GGNNCC 4 cut(s) 215, 283, 483, 669
BspT107I GGYRCC 2 cut(s) 281, 667
BsrDI GCAATG 1 cut(s) 715
BssECI CCNNGG 2 cut(s) 127, 183
BssMI GATC 1 cut(s) 655
BssNI GRCGYC 2 cut(s) 282, 778
Bst4CI ACNGT 5 cut(s) 359, 383, 523, 645, 753
Bst6I CTCTTC 2 cut(s) 102, 744
BstACI GRCGYC 2 cut(s) 282, 778
BstAPI GCANNNNNTGC 1 cut(s) 256
BstBAI YACGTR 2 cut(s) 466, 477
BstC8I GCNNGC 1 cut(s) 373
BstDEI CTNAG 4 cut(s) 11, 218, 260, 638
BstEII GGTNACC 1 cut(s) 517
BstF5I GGATG 1 cut(s) 760
BstH2I RGCGCY 1 cut(s) 285
BstHHI GCGC 1 cut(s) 284
BstKTI GATC 1 cut(s) 658
BstMAI GTCTC 1 cut(s) 728
BstMBI GATC 1 cut(s) 655
BstMCI CGRYCG 1 cut(s) 180
BstMWI GCNNNNNNNGC 3 cut(s) 179, 256, 505
BstNSI RCATGY 2 cut(s) 259, 299
BstPI GGTNACC 1 cut(s) 517
BstSCI CCNGG 1 cut(s) 228
BstSLI GKGCMC 1 cut(s) 54
BstV1I GCAGC 2 cut(s) 392, 500
BstV2I GAAGAC 1 cut(s) 360
BstXI CCANNNNNNTGG 1 cut(s) 730
BsuRI GGCC 2 cut(s) 126, 165
BtsCI GGATG 1 cut(s) 760
BtsI GCAGTG 2 cut(s) 147, 696
BtsIMutI CAGTG 3 cut(s) 147, 364, 696
Cac8I GCNNGC 1 cut(s) 373
CfoI GCGC 1 cut(s) 284
CseI GACGC 1 cut(s) 767
Csp6I GTAC 2 cut(s) 226, 668
CspCI CAANNNNNGTGG 4 cut(s) 97, 132, 364, 399
CviAII CATG 4 cut(s) 159, 256, 296, 364
CviQI GTAC 2 cut(s) 226, 668
DdeI CTNAG 4 cut(s) 11, 218, 260, 638
DinI GGCGCC 1 cut(s) 283
DpnI GATC 1 cut(s) 657
DpnII GATC 1 cut(s) 655
EaeI YGGCCR 1 cut(s) 163
Eam1104I CTCTTC 2 cut(s) 102, 744
EarI CTCTTC 2 cut(s) 102, 744
EciI GGCGGA 1 cut(s) 317
Eco32I GATATC 1 cut(s) 19
Eco57I CTGAAG 1 cut(s) 810
Eco72I CACGTG 2 cut(s) 466, 477
Eco91I GGTNACC 1 cut(s) 517
EcoO65I GGTNACC 1 cut(s) 517
EcoRI GAATTC 1 cut(s) 238
EcoRV GATATC 1 cut(s) 19
EgeI GGCGCC 1 cut(s) 283
EheI GGCGCC 1 cut(s) 283
FaeI CATG 4 cut(s) 162, 259, 299, 367
FaiI YATR 6 cut(s) 160, 257, 297, 365, 450, 690
FatI CATG 4 cut(s) 158, 255, 295, 363
FauI CCCGC 1 cut(s) 492
Fnu4HI GCNGC 6 cut(s) 280, 406, 489, 497, 553, 556
FokI GGATG 1 cut(s) 747
Fsp4HI GCNGC 6 cut(s) 280, 406, 489, 497, 553, 556
FspBI CTAG 1 cut(s) 546
GlaI GCGC 1 cut(s) 283
GluI GCNGC 6 cut(s) 280, 406, 489, 497, 553, 556
GsuI CTGGAG 1 cut(s) 232
HaeII RGCGCY 1 cut(s) 285
HaeIII GGCC 2 cut(s) 126, 165
HapII CCGG 3 cut(s) 194, 230, 573
HgaI GACGC 1 cut(s) 767
HhaI GCGC 1 cut(s) 284
Hin1I GRCGYC 2 cut(s) 282, 778
Hin1II CATG 4 cut(s) 162, 259, 299, 367
Hin6I GCGC 1 cut(s) 282
HinP1I GCGC 1 cut(s) 282
HincII GTYRAC 1 cut(s) 293
HindII GTYRAC 1 cut(s) 293
HinfI GANTC 4 cut(s) 271, 305, 693, 736
HpaII CCGG 3 cut(s) 194, 230, 573
HphI GGTGA 3 cut(s) 362, 529, 572
Hpy166II GTNNAC 4 cut(s) 52, 293, 325, 782
Hpy188I TCNGA 5 cut(s) 12, 79, 177, 310, 641
Hpy188III TCNNGA 3 cut(s) 25, 194, 211
Hpy8I GTNNAC 4 cut(s) 52, 293, 325, 782
HpyAV CCTTC 4 cut(s) 111, 326, 557, 785
HpyCH4III ACNGT 5 cut(s) 359, 383, 523, 645, 753
HpyCH4IV ACGT 4 cut(s) 205, 224, 465, 476
HpyCH4V TGCA 6 cut(s) 52, 152, 375, 423, 435, 626
HpyF10VI GCNNNNNNNGC 3 cut(s) 179, 256, 505
HpyF3I CTNAG 4 cut(s) 11, 218, 260, 638
HpySE526I ACGT 4 cut(s) 205, 224, 465, 476
Hsp92I GRCGYC 2 cut(s) 282, 778
Hsp92II CATG 4 cut(s) 162, 259, 299, 367
HspAI GCGC 1 cut(s) 282
KasI GGCGCC 1 cut(s) 281
Kpn2I TCCGGA 1 cut(s) 193
KpnI GGTACC 1 cut(s) 671
Kzo9I GATC 1 cut(s) 655
LmnI GCTCC 6 cut(s) 37, 178, 213, 232, 461, 471
Lsp1109I GCAGC 2 cut(s) 392, 500
LweI GCATC 1 cut(s) 600
MaeI CTAG 1 cut(s) 546
MaeII ACGT 4 cut(s) 205, 224, 465, 476
MaeIII GTNAC 3 cut(s) 517, 694, 718
MalI GATC 1 cut(s) 657
MboI GATC 1 cut(s) 655
MboII GAAGA 9 cut(s) 36, 89, 234, 365, 561, 570, 573, 731, 734
MhlI GDGCHC 2 cut(s) 54, 476
MlsI TGGCCA 1 cut(s) 165
MluCI AATT 2 cut(s) 199, 238
MluNI TGGCCA 1 cut(s) 165
Mly113I GGCGCC 1 cut(s) 282
MlyI GAGTC 2 cut(s) 702, 730
MmeI TCCRAC 2 cut(s) 200, 772
Mox20I TGGCCA 1 cut(s) 165
MroI TCCGGA 1 cut(s) 193
MscI TGGCCA 1 cut(s) 165
MseI TTAA 1 cut(s) 681
MslI CAYNNNNRTG 1 cut(s) 464
Msp20I TGGCCA 1 cut(s) 165
MspA1I CMGCKG 2 cut(s) 674, 788
MspI CCGG 3 cut(s) 194, 230, 573
MspR9I CCNGG 1 cut(s) 230
Mva1269I GAATGC 1 cut(s) 628
MwoI GCNNNNNNNGC 3 cut(s) 179, 256, 505
NarI GGCGCC 1 cut(s) 282
NciI CCSGG 1 cut(s) 230
NdeII GATC 1 cut(s) 655
NlaIII CATG 4 cut(s) 162, 259, 299, 367
NlaIV GGNNCC 4 cut(s) 215, 283, 483, 669
NmeAIII GCCGAG 1 cut(s) 208
NmuCI GTSAC 2 cut(s) 517, 694
NspI RCATGY 2 cut(s) 259, 299
OliI CACNNNNGTG 1 cut(s) 464
PciI ACATGT 1 cut(s) 295
PcsI WCGNNNNNNNCGW 1 cut(s) 282
PctI GAATGC 1 cut(s) 628
PfeI GAWTC 2 cut(s) 271, 305
PkrI GCNGC 6 cut(s) 281, 407, 490, 498, 554, 557
PleI GAGTC 2 cut(s) 701, 730
PluTI GGCGCC 1 cut(s) 285
PmaCI CACGTG 2 cut(s) 466, 477
PmlI CACGTG 2 cut(s) 466, 477
PpsI GAGTC 2 cut(s) 701, 730
Ppu21I YACGTR 2 cut(s) 466, 477
PscI ACATGT 1 cut(s) 295
PspCI CACGTG 2 cut(s) 466, 477
PspEI GGTNACC 1 cut(s) 517
PspN4I GGNNCC 4 cut(s) 215, 283, 483, 669
PvuII CAGCTG 2 cut(s) 674, 788
RsaI GTAC 2 cut(s) 227, 669
RsaNI GTAC 2 cut(s) 226, 668
RseI CAYNNNNRTG 1 cut(s) 464
SaqAI TTAA 1 cut(s) 681
SatI GCNGC 6 cut(s) 280, 406, 489, 497, 553, 556
Sau3AI GATC 1 cut(s) 655
SchI GAGTC 2 cut(s) 702, 730
ScrFI CCNGG 1 cut(s) 230
SduI GDGCHC 2 cut(s) 54, 476
SfaNI GCATC 1 cut(s) 600
SfoI GGCGCC 1 cut(s) 283
SmiMI CAYNNNNRTG 1 cut(s) 464
Sse9I AATT 2 cut(s) 199, 238
SsiI CCGC 9 cut(s) 180, 279, 302, 348, 496, 499, 552, 555, 558
SspDI GGCGCC 1 cut(s) 281
SspMI CTAG 1 cut(s) 546
StyD4I CCNGG 1 cut(s) 228
TaaI ACNGT 5 cut(s) 359, 383, 523, 645, 753
TaiI ACGT 4 cut(s) 208, 227, 468, 479
TasI AATT 2 cut(s) 199, 238
TauI GCSGC 4 cut(s) 282, 499, 555, 558
TfiI GAWTC 2 cut(s) 271, 305
Tru1I TTAA 1 cut(s) 681
Tru9I TTAA 1 cut(s) 681
TscAI CASTG 3 cut(s) 154, 364, 703
TseFI GTSAC 2 cut(s) 517, 694
TseI GCWGC 2 cut(s) 405, 488
Tsp45I GTSAC 2 cut(s) 517, 694
TspGWI ACGGA 3 cut(s) 330, 342, 574
TspRI CASTG 3 cut(s) 154, 364, 703
VneI GTGCAC 1 cut(s) 50
XapI RAATTY 1 cut(s) 238
XceI RCATGY 2 cut(s) 259, 299
XcmI CCANNNNNNNNNTGG 2 cut(s) 709, 771
XspI CTAG 1 cut(s) 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.