Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002187

Physical Location & Seq

Genomic Coordinates Forward (+)

1191584 .. 1194789

Gene Structure 3206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G000540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGCTCTCTCTCTCGAAGCTCTCTCCAAGGGTTTCCCGGCGGCGGCGGCAGTTTGGTTCTTTTGACTCGGACGGGTGGTCTCCCTCCTTTCTGGTCTCTGATGAAGGTGGTCTCAAGGCTATTGTGAGTTGGATCCTCTTGGCATTGGGAGGCCTCGGCCTCCTTCTTGTTTCTGGCGCTTGGTGCTCCTCTGAGTCTCCGGCGATTGGTTATGATGGCCTTCCTCCAGCATGGAGTGTTGTGGGTCCAAATCTAACAGGTTGCTCTGGTGGTTGGGCTGAGGGGGAATCGAGCTTCCCTCTTGTGTCTGCCGGCGTCAGATCTGGTGCCATATTTGATGTGTGGCAGTGGAGCGTACAGCAGCCAGGTGATGATGGTAGTGTAATCGGATGGGATGCGGGGCTTTCGGCGTATGGCTCCTCTACTTCATGGGGGCAACAGTTTGCTTCTGGAGTGAATGCATCTGCCTGTGATGACAGGTCCTTAGGGTGGAGCGACGCTGGGGCTACCGGCGTGAGGTGGTTGTCGAGAGGTTTGGGCACTGACGTCAGCATGGTGGATCAAAGGCTAGATCTAGATCTTGGGCTTGTTGTAGCATGGGCTCGAAGGTTTAGTGGTTTACTCCCTAGGCCTGAGACGCCCTCGGGGGATCCTCCTTTACCCTCACAAACCCTCATTGCATCGAAGGATGCCTGTACCCTCACTGTGCTCAATCAACAAGGTAAGATCGCTCCGGCAAGGAACAAGTTCAGTTTGTTGTTGATGGATAATCGTCGAGAGGTGCTGACACTTCAAGGACATTATGGAGAAGAAGGAAGAAACCATTCTTATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

278

Amino Acids

29.49

Weight (kDa)

5.22

Isoelectric Point (pI)

58.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54430
fragaria_vesca	FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110
malus_domestica	MD02G1285800.v1.1
prunus_persica	Prupe.2G036500_v2.0.a1 Prupe.2G036500_v2.0.a1 Prupe.2G036500_v2.0.a1 Prupe.2G036500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0319531 RchiOBHm_Chr1g0324311
rosa_laevigata	RLG00000008631 RLG00000017375 RLG00000030203 RLG00000033698
rosa_multiflora	Rmu_sc0004082.1_g000006 Rmu_sc0004082.1_g000019 Rmu_sc0004082.1_g000020
rosa_roxburghii	Rroxscaffold_159G00432690 Rroxscaffold_159G00432760 Rroxscaffold_159G00432820 Rroxscaffold_4G00325640 Rroxscaffold_4G00325700
rosa_rugosa	Rorug01G0045000 Rorug01G0045100 Rorug01G0045200 Rorug01G0045300 Rorug01G0045400 Rorug01G0045500
rosa_samantha	Rh1AG061000 Rh1BG052100 Rh1CG063200 Rh1DG067600 Rh6AG126800 Rh6CG264300 Rh7CG487400
rosa_wichuraiana	Rw1G005190 Rw4G000540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	549
AccB1I	GGYRCC	1 cut(s)	326
AciI	CCGC	4 cut(s)	40, 43, 46, 398
AclWI	GGATC	5 cut(s)	127, 140, 567, 644, 657
AcyI	GRCGYC	3 cut(s)	315, 546, 638
AfaI	GTAC	2 cut(s)	357, 697
AfiI	CCNNNNNNNGG	4 cut(s)	42, 206, 489, 516
AgsI	TTSAA	1 cut(s)	794
AhdI	GACNNNNNGTC	1 cut(s)	76
AjnI	CCWGG	1 cut(s)	364
AluBI	AGCT	2 cut(s)	19, 294
AluI	AGCT	2 cut(s)	19, 294
Alw21I	GWGCWC	2 cut(s)	188, 711
Alw26I	GTCTC	5 cut(s)	84, 100, 116, 201, 629
AlwI	GGATC	5 cut(s)	127, 140, 567, 644, 657
Ama87I	CYCGRG	1 cut(s)	643
AoxI	GGCC	4 cut(s)	151, 157, 217, 629
ApeKI	GCWGC	1 cut(s)	361
Asp700I	GAANNNNTTC	2 cut(s)	746, 823
AspA2I	CCTAGG	1 cut(s)	626
AspLEI	GCGC	1 cut(s)	179
AspS9I	GGNCC	2 cut(s)	245, 480
AsuC2I	CCSGG	1 cut(s)	37
AsuHPI	GGTGA	1 cut(s)	380
AvaI	CYCGRG	1 cut(s)	643
AvaII	GGWCC	2 cut(s)	245, 480
AvrII	CCTAGG	1 cut(s)	626
AxyI	CCTNAGG	1 cut(s)	484
BaeGI	GKGCMC	1 cut(s)	542
BamHI	GGATCC	2 cut(s)	132, 649
BanI	GGYRCC	1 cut(s)	326
BanII	GRGCYC	1 cut(s)	604
Bbv12I	GWGCWC	2 cut(s)	188, 711
BbvCI	CCTCAGC	1 cut(s)	279
BbvI	GCAGC	1 cut(s)	373
BccI	CCATC	4 cut(s)	209, 368, 384, 757
BciT130I	CCWGG	1 cut(s)	366
BcnI	CCSGG	1 cut(s)	37
BcoDI	GTCTC	5 cut(s)	84, 100, 116, 201, 629
BfaI	CTAG	3 cut(s)	569, 575, 627
BfoI	RGCGCY	1 cut(s)	180
BglII	AGATCT	3 cut(s)	320, 571, 577
BisI	GCNGC	4 cut(s)	41, 44, 47, 362
BlnI	CCTAGG	1 cut(s)	626
BlsI	GCNGC	4 cut(s)	42, 45, 48, 363
Bme1390I	CCNGG	2 cut(s)	37, 366
Bme18I	GGWCC	2 cut(s)	245, 480
BmeRI	GACNNNNNGTC	1 cut(s)	76
BmeT110I	CYCGRG	1 cut(s)	643
BmgT120I	GGNCC	2 cut(s)	245, 480
BmiI	GGNNCC	5 cut(s)	134, 246, 328, 418, 651
BmrFI	CCNGG	2 cut(s)	37, 366
BmsI	GCATC	4 cut(s)	385, 470, 679, 689
BplI	GAGNNNNNCTC	4 cut(s)	283, 315, 626, 658
BpmI	CTGGAG	2 cut(s)	210, 471
Bpu10I	CCTNAGC	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	98
BpuMI	CCSGG	1 cut(s)	37
BsaBI	GATNNNNATC	1 cut(s)	576
BsaHI	GRCGYC	3 cut(s)	315, 546, 638
BsaI	GGTCTC	3 cut(s)	84, 100, 116
BsaJI	CCNNGG	4 cut(s)	26, 154, 626, 642
Bsc4I	CCNNNNNNNGG	4 cut(s)	42, 206, 489, 516
Bse118I	RCCGGY	2 cut(s)	311, 509
Bse21I	CCTNAGG	1 cut(s)	484
Bse3DI	GCAATG	1 cut(s)	675
Bse8I	GATNNNNATC	1 cut(s)	576
BseBI	CCWGG	1 cut(s)	366
BseDI	CCNNGG	4 cut(s)	26, 154, 626, 642
BseGI	GGATG	3 cut(s)	395, 400, 694
BseJI	GATNNNNATC	1 cut(s)	576
BseLI	CCNNNNNNNGG	4 cut(s)	42, 206, 489, 516
BseMI	GCAATG	1 cut(s)	675
BseMII	CTCAG	3 cut(s)	183, 270, 624
BseRI	GAGGAG	2 cut(s)	178, 409
BseSI	GKGCMC	1 cut(s)	542
BseXI	GCAGC	1 cut(s)	373
BseYI	CCCAGC	1 cut(s)	500
BshFI	GGCC	4 cut(s)	153, 159, 219, 631
BshNI	GGYRCC	1 cut(s)	326
BsiHKAI	GWGCWC	2 cut(s)	188, 711
BsiHKCI	CYCGRG	1 cut(s)	643
BsiSI	CCGG	5 cut(s)	37, 200, 312, 510, 734
BslI	CCNNNNNNNGG	4 cut(s)	42, 206, 489, 516
BsmAI	GTCTC	5 cut(s)	84, 100, 116, 201, 629
BsmBI	CGTCTC	1 cut(s)	629
BsmI	GAATGC	1 cut(s)	463
BsnI	GGCC	4 cut(s)	153, 159, 219, 631
Bso31I	GGTCTC	3 cut(s)	84, 100, 116
BsoBI	CYCGRG	1 cut(s)	643
Bsp1286I	GDGCHC	4 cut(s)	188, 542, 604, 711
Bsp143I	GATC	7 cut(s)	132, 320, 559, 571, 577, 649, 726
BspACI	CCGC	4 cut(s)	40, 43, 46, 398
BspANI	GGCC	4 cut(s)	153, 159, 219, 631
BspCNI	CTCAG	3 cut(s)	184, 271, 625
BspHI	TCATGA	1 cut(s)	833
BspLI	GGNNCC	5 cut(s)	134, 246, 328, 418, 651
BspPI	GGATC	5 cut(s)	127, 140, 567, 644, 657
BspT107I	GGYRCC	1 cut(s)	326
BspTNI	GGTCTC	3 cut(s)	84, 100, 116
BsrDI	GCAATG	1 cut(s)	675
BsrFI	RCCGGY	2 cut(s)	311, 509
BssAI	RCCGGY	2 cut(s)	311, 509
BssECI	CCNNGG	4 cut(s)	26, 154, 626, 642
BssMI	GATC	7 cut(s)	132, 320, 559, 571, 577, 649, 726
BssNI	GRCGYC	3 cut(s)	315, 546, 638
BssT1I	CCWWGG	2 cut(s)	26, 626
Bst2UI	CCWGG	1 cut(s)	366
Bst4CI	ACNGT	2 cut(s)	441, 706
BstACI	GRCGYC	3 cut(s)	315, 546, 638
BstC8I	GCNNGC	1 cut(s)	313
BstDEI	CTNAG	4 cut(s)	192, 279, 484, 633
BstF5I	GGATG	3 cut(s)	395, 400, 694
BstH2I	RGCGCY	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	179
BstKTI	GATC	7 cut(s)	135, 323, 562, 574, 580, 652, 729
BstMAI	GTCTC	5 cut(s)	84, 100, 116, 201, 629
BstMBI	GATC	7 cut(s)	132, 320, 559, 571, 577, 649, 726
BstMWI	GCNNNNNNNGC	3 cut(s)	46, 183, 637
BstNI	CCWGG	1 cut(s)	366
BstSCI	CCNGG	2 cut(s)	35, 364
BstSLI	GKGCMC	1 cut(s)	542
BstV1I	GCAGC	1 cut(s)	373
BstX2I	RGATCY	5 cut(s)	132, 320, 571, 577, 649
BstYI	RGATCY	5 cut(s)	132, 320, 571, 577, 649
Bsu36I	CCTNAGG	1 cut(s)	484
BsuRI	GGCC	4 cut(s)	153, 159, 219, 631
BtsCI	GGATG	3 cut(s)	395, 400, 694
BtsI	GCAGTG	1 cut(s)	353
BtsIMutI	CAGTG	3 cut(s)	353, 540, 702
Cac8I	GCNNGC	1 cut(s)	313
CciI	TCATGA	1 cut(s)	833
CfoI	GCGC	1 cut(s)	179
Cfr10I	RCCGGY	2 cut(s)	311, 509
Cfr13I	GGNCC	2 cut(s)	245, 480
CseI	GACGC	3 cut(s)	304, 506, 646
Csp6I	GTAC	2 cut(s)	356, 696
CviAII	CATG	5 cut(s)	231, 429, 553, 597, 834
CviQI	GTAC	2 cut(s)	356, 696
DdeI	CTNAG	4 cut(s)	192, 279, 484, 633
DpnI	GATC	7 cut(s)	134, 322, 561, 573, 579, 651, 728
DpnII	GATC	7 cut(s)	132, 320, 559, 571, 577, 649, 726
DriI	GACNNNNNGTC	1 cut(s)	76
Eam1105I	GACNNNNNGTC	1 cut(s)	76
Eco130I	CCWWGG	2 cut(s)	26, 626
Eco147I	AGGCCT	2 cut(s)	153, 631
Eco24I	GRGCYC	1 cut(s)	604
Eco31I	GGTCTC	3 cut(s)	84, 100, 116
Eco47I	GGWCC	2 cut(s)	245, 480
Eco81I	CCTNAGG	1 cut(s)	484
Eco88I	CYCGRG	1 cut(s)	643
EcoO109I	RGGNCCY	1 cut(s)	480
EcoRII	CCWGG	1 cut(s)	364
EcoT14I	CCWWGG	2 cut(s)	26, 626
EcoT22I	ATGCAT	1 cut(s)	463
EcoT38I	GRGCYC	1 cut(s)	604
ErhI	CCWWGG	2 cut(s)	26, 626
Esp3I	CGTCTC	1 cut(s)	629
FaeI	CATG	5 cut(s)	234, 432, 556, 600, 837
FaiI	YATR	9 cut(s)	213, 232, 332, 414, 430, 554, 598, 804, 835
FatI	CATG	5 cut(s)	230, 428, 552, 596, 833
FauI	CCCGC	1 cut(s)	391
Fnu4HI	GCNGC	4 cut(s)	41, 44, 47, 362
FokI	GGATG	3 cut(s)	402, 407, 701
FriOI	GRGCYC	1 cut(s)	604
Fsp4HI	GCNGC	4 cut(s)	41, 44, 47, 362
FspBI	CTAG	3 cut(s)	569, 575, 627
GlaI	GCGC	1 cut(s)	178
GluI	GCNGC	4 cut(s)	41, 44, 47, 362
GsaI	CCCAGC	1 cut(s)	504
GsuI	CTGGAG	2 cut(s)	210, 471
HaeII	RGCGCY	1 cut(s)	180
HaeIII	GGCC	4 cut(s)	153, 159, 219, 631
HapII	CCGG	5 cut(s)	37, 200, 312, 510, 734
HgaI	GACGC	3 cut(s)	304, 506, 646
HhaI	GCGC	1 cut(s)	179
Hin1I	GRCGYC	3 cut(s)	315, 546, 638
Hin1II	CATG	5 cut(s)	234, 432, 556, 600, 837
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HinfI	GANTC	3 cut(s)	65, 194, 287
HpaII	CCGG	5 cut(s)	37, 200, 312, 510, 734
HphI	GGTGA	1 cut(s)	380
Hpy166II	GTNNAC	1 cut(s)	620
Hpy188I	TCNGA	5 cut(s)	70, 100, 193, 320, 389
Hpy188III	TCNNGA	6 cut(s)	13, 450, 528, 575, 776, 834
Hpy8I	GTNNAC	1 cut(s)	620
Hpy99I	CGWCG	2 cut(s)	500, 777
HpyAV	CCTTC	6 cut(s)	98, 173, 230, 600, 679, 806
HpyCH4III	ACNGT	2 cut(s)	441, 706
HpyCH4IV	ACGT	1 cut(s)	546
HpyCH4V	TGCA	2 cut(s)	461, 680
HpyF10VI	GCNNNNNNNGC	3 cut(s)	46, 183, 637
HpyF3I	CTNAG	4 cut(s)	192, 279, 484, 633
HpySE526I	ACGT	1 cut(s)	546
Hsp92I	GRCGYC	3 cut(s)	315, 546, 638
Hsp92II	CATG	5 cut(s)	234, 432, 556, 600, 837
HspAI	GCGC	1 cut(s)	177
KroI	GCCGGC	1 cut(s)	311
KroNI	GCCGGC	1 cut(s)	313
Kzo9I	GATC	7 cut(s)	132, 320, 559, 571, 577, 649, 726
LmnI	GCTCC	5 cut(s)	191, 351, 422, 492, 736
Lsp1109I	GCAGC	1 cut(s)	373
LweI	GCATC	4 cut(s)	385, 470, 679, 689
MaeI	CTAG	3 cut(s)	569, 575, 627
MaeII	ACGT	1 cut(s)	546
MalI	GATC	7 cut(s)	134, 322, 561, 573, 579, 651, 728
MboI	GATC	7 cut(s)	132, 320, 559, 571, 577, 649, 726
MboII	GAAGA	2 cut(s)	821, 828
MflI	RGATCY	5 cut(s)	132, 320, 571, 577, 649
MhlI	GDGCHC	4 cut(s)	188, 542, 604, 711
MlyI	GAGTC	2 cut(s)	59, 203
MmeI	TCCRAC	1 cut(s)	110
Mph1103I	ATGCAT	1 cut(s)	463
MroNI	GCCGGC	1 cut(s)	311
MroXI	GAANNNNTTC	2 cut(s)	746, 823
MspI	CCGG	5 cut(s)	37, 200, 312, 510, 734
MspR9I	CCNGG	2 cut(s)	37, 366
Mva1269I	GAATGC	1 cut(s)	463
MvaI	CCWGG	1 cut(s)	366
MwoI	GCNNNNNNNGC	3 cut(s)	46, 183, 637
NaeI	GCCGGC	1 cut(s)	313
NciI	CCSGG	1 cut(s)	37
NdeII	GATC	7 cut(s)	132, 320, 559, 571, 577, 649, 726
NgoMIV	GCCGGC	1 cut(s)	311
NlaIII	CATG	5 cut(s)	234, 432, 556, 600, 837
NlaIV	GGNNCC	5 cut(s)	134, 246, 328, 418, 651
NmeAIII	GCCGAG	1 cut(s)	135
NsiI	ATGCAT	1 cut(s)	463
PagI	TCATGA	1 cut(s)	833
PceI	AGGCCT	2 cut(s)	153, 631
PctI	GAATGC	1 cut(s)	463
PdiI	GCCGGC	1 cut(s)	313
PdmI	GAANNNNTTC	2 cut(s)	746, 823
PfeI	GAWTC	1 cut(s)	287
PkrI	GCNGC	4 cut(s)	42, 45, 48, 363
PleI	GAGTC	2 cut(s)	59, 202
PpsI	GAGTC	2 cut(s)	59, 202
PpuMI	RGGWCCY	1 cut(s)	480
Psp5II	RGGWCCY	1 cut(s)	480
Psp6I	CCWGG	1 cut(s)	364
PspFI	CCCAGC	1 cut(s)	500
PspGI	CCWGG	1 cut(s)	364
PspN4I	GGNNCC	5 cut(s)	134, 246, 328, 418, 651
PspPI	GGNCC	2 cut(s)	245, 480
PspPPI	RGGWCCY	1 cut(s)	480
PsuI	RGATCY	5 cut(s)	132, 320, 571, 577, 649
RsaI	GTAC	2 cut(s)	357, 697
RsaNI	GTAC	2 cut(s)	356, 696
SatI	GCNGC	4 cut(s)	41, 44, 47, 362
Sau3AI	GATC	7 cut(s)	132, 320, 559, 571, 577, 649, 726
Sau96I	GGNCC	2 cut(s)	245, 480
SchI	GAGTC	2 cut(s)	59, 203
ScrFI	CCNGG	2 cut(s)	37, 366
SduI	GDGCHC	4 cut(s)	188, 542, 604, 711
SfaNI	GCATC	4 cut(s)	385, 470, 679, 689
SinI	GGWCC	2 cut(s)	245, 480
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
SseBI	AGGCCT	2 cut(s)	153, 631
SsiI	CCGC	4 cut(s)	40, 43, 46, 398
SspMI	CTAG	3 cut(s)	569, 575, 627
StuI	AGGCCT	2 cut(s)	153, 631
StyD4I	CCNGG	2 cut(s)	35, 364
StyI	CCWWGG	2 cut(s)	26, 626
TaaI	ACNGT	2 cut(s)	441, 706
TaiI	ACGT	1 cut(s)	549
TaqI	TCGA	6 cut(s)	14, 290, 527, 604, 683, 775
TauI	GCSGC	3 cut(s)	43, 46, 49
TfiI	GAWTC	1 cut(s)	287
TscAI	CASTG	3 cut(s)	353, 547, 709
TseI	GCWGC	1 cut(s)	361
TspDTI	ATGAA	3 cut(s)	117, 417, 822
TspRI	CASTG	3 cut(s)	353, 547, 709
VpaK11BI	GGWCC	2 cut(s)	245, 480
XbaI	TCTAGA	1 cut(s)	574
XmaJI	CCTAGG	1 cut(s)	626
XmnI	GAANNNNTTC	2 cut(s)	746, 823
XspI	CTAG	3 cut(s)	569, 575, 627
ZraI	GACGTC	1 cut(s)	547
Zsp2I	ATGCAT	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.