Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002187

Physical Location & Seq

Genomic Coordinates Reverse (-)

7717783 .. 7718358

Gene Structure 576 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0045400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGCAAGCCATTGATAAAGATAGAAAGGTCCATATTGTGTACCTGGGAACACTTCCTGATGATGAGGTCTATTTATACATGTCTCATCACCTTGGTATACTAGAAAGAGTTGTTGGGAGAAACTCCGCTGCAAAATTCTTGGCAAGAAGTTTCAATGGATTTGCTGCAGAGCTCACTGACCAGGAAAGAGAAAGGCTTTCTAGCACGAAGGAAGTAGTGTCTGTTTTTCCAAGCAGAACTTTCCAGCTTCAAACAACAAGATCTTGGGACTTTATCGGGTTGTATGAGAAAATCCATCAAAATGCAACTTTTGAGAGTGATGTAATTATTGGAGTGTTTGACAGTGGAATTTGGCCCGAATCTGAGAGCTTTAAAAATGAAGTTTTTGGTCCTGCCCCCAATAAATGGAAAGGTGCTTATGCAGGCAGTAAACATTTCACTTGTAACAACAAGATAATTGGAGCTCAGTTTTACAAGCCAGCAGATTCTGCAAGAGATGCAAATGGTCATGGAACCCATGTTGCCTCAACAGCAGCAGGGAACACCGTAAAGGATGTTATAGCTATTACGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF702

Protein Analysis

191

Amino Acids

21.26

Weight (kDa)

6.38

Isoelectric Point (pI)

35.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I9	PF05922	11 - 84	6.3e-09	Peptidase inhibitor I9
Peptidase_S8	PF00082	106 - 183	1e-07	Subtilase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54430
fragaria_vesca	FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110 FvH4_7g03110
malus_domestica	MD02G1285800.v1.1
prunus_persica	Prupe.2G036500_v2.0.a1 Prupe.2G036500_v2.0.a1 Prupe.2G036500_v2.0.a1 Prupe.2G036500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0319531 RchiOBHm_Chr1g0324311
rosa_laevigata	RLG00000008631 RLG00000017375 RLG00000030203 RLG00000033698
rosa_multiflora	Rmu_sc0004082.1_g000006 Rmu_sc0004082.1_g000019 Rmu_sc0004082.1_g000020
rosa_roxburghii	Rroxscaffold_159G00432690 Rroxscaffold_159G00432760 Rroxscaffold_159G00432820 Rroxscaffold_4G00325640 Rroxscaffold_4G00325700
rosa_rugosa	Rorug01G0045000 Rorug01G0045100 Rorug01G0045200 Rorug01G0045300 Rorug01G0045400 Rorug01G0045500
rosa_samantha	Rh1AG061000 Rh1BG052100 Rh1CG063200 Rh1DG067600 Rh6AG126800 Rh6CG264300 Rh7CG487400
rosa_wichuraiana	Rw1G005190 Rw4G000540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	405
AccI	GTMKAC	1 cut(s)	97
AciI	CCGC	1 cut(s)	126
AcsI	RAATTY	2 cut(s)	134, 348
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	1 cut(s)	405
AflIII	ACRYGT	1 cut(s)	78
AgsI	TTSAA	2 cut(s)	154, 251
AjnI	CCWGG	2 cut(s)	42, 180
AjuI	GAANNNNNNNTTGG	2 cut(s)	96, 128
AluBI	AGCT	5 cut(s)	172, 247, 369, 464, 563
AluI	AGCT	5 cut(s)	172, 247, 369, 464, 563
Alw21I	GWGCWC	2 cut(s)	174, 466
Alw26I	GTCTC	1 cut(s)	87
AlwNI	CAGNNNCTG	1 cut(s)	488
AoxI	GGCC	1 cut(s)	353
ApeKI	GCWGC	3 cut(s)	128, 164, 533
ApoI	RAATTY	2 cut(s)	134, 348
AspS9I	GGNCC	3 cut(s)	28, 354, 389
AsuHPI	GGTGA	1 cut(s)	80
AvaII	GGWCC	2 cut(s)	28, 389
BanII	GRGCYC	2 cut(s)	174, 466
Bbv12I	GWGCWC	2 cut(s)	174, 466
BbvI	GCAGC	3 cut(s)	115, 151, 545
BccI	CCATC	1 cut(s)	303
BciT130I	CCWGG	2 cut(s)	44, 182
BcoDI	GTCTC	1 cut(s)	87
BfaI	CTAG	2 cut(s)	101, 201
BfmI	CTRYAG	1 cut(s)	165
BglII	AGATCT	1 cut(s)	260
BisI	GCNGC	3 cut(s)	129, 165, 534
BlsI	GCNGC	3 cut(s)	130, 166, 535
Bme1390I	CCNGG	2 cut(s)	44, 182
Bme18I	GGWCC	2 cut(s)	28, 389
BmgT120I	GGNCC	3 cut(s)	28, 354, 389
BmiI	GGNNCC	1 cut(s)	514
BmrFI	CCNGG	2 cut(s)	44, 182
BmsI	GCATC	1 cut(s)	487
BsaJI	CCNNGG	2 cut(s)	43, 91
Bsc4I	CCNNNNNNNGG	1 cut(s)	405
BseBI	CCWGG	2 cut(s)	44, 182
BseDI	CCNNGG	2 cut(s)	43, 91
BseGI	GGATG	1 cut(s)	559
BseLI	CCNNNNNNNGG	1 cut(s)	405
BseMII	CTCAG	2 cut(s)	354, 479
BseXI	GCAGC	3 cut(s)	115, 151, 545
BshFI	GGCC	1 cut(s)	355
BsiHKAI	GWGCWC	2 cut(s)	174, 466
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	1 cut(s)	405
BsmAI	GTCTC	1 cut(s)	87
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	1 cut(s)	355
Bsp1286I	GDGCHC	2 cut(s)	174, 466
Bsp143I	GATC	1 cut(s)	260
BspACI	CCGC	1 cut(s)	126
BspANI	GGCC	1 cut(s)	355
BspCNI	CTCAG	2 cut(s)	355, 478
BspLI	GGNNCC	1 cut(s)	514
BspMAI	CTGCAG	1 cut(s)	169
BssECI	CCNNGG	2 cut(s)	43, 91
BssMI	GATC	1 cut(s)	260
BssNAI	GTATAC	1 cut(s)	98
BssT1I	CCWWGG	1 cut(s)	91
Bst1107I	GTATAC	1 cut(s)	98
Bst2UI	CCWGG	2 cut(s)	44, 182
Bst4CI	ACNGT	2 cut(s)	344, 547
BstAPI	GCANNNNNTGC	2 cut(s)	488, 497
BstC8I	GCNNGC	3 cut(s)	6, 424, 480
BstDEI	CTNAG	2 cut(s)	363, 465
BstF5I	GGATG	1 cut(s)	559
BstKTI	GATC	1 cut(s)	263
BstMAI	GTCTC	1 cut(s)	87
BstMBI	GATC	1 cut(s)	260
BstMWI	GCNNNNNNNGC	3 cut(s)	488, 497, 530
BstNI	CCWGG	2 cut(s)	44, 182
BstNSI	RCATGY	1 cut(s)	82
BstSCI	CCNGG	2 cut(s)	42, 180
BstSFI	CTRYAG	1 cut(s)	165
BstV1I	GCAGC	3 cut(s)	115, 151, 545
BstX2I	RGATCY	1 cut(s)	260
BstYI	RGATCY	1 cut(s)	260
BstZ17I	GTATAC	1 cut(s)	98
BsuRI	GGCC	1 cut(s)	355
BtsCI	GGATG	1 cut(s)	559
BtsIMutI	CAGTG	2 cut(s)	174, 349
Cac8I	GCNNGC	3 cut(s)	6, 424, 480
CaiI	CAGNNNCTG	1 cut(s)	488
Cfr13I	GGNCC	3 cut(s)	28, 354, 389
Csp6I	GTAC	1 cut(s)	40
CviAII	CATG	3 cut(s)	79, 509, 518
CviJI	RGCY	9 cut(s)	8, 172, 196, 247, 355, 369, 464, 478, 563
CviKI_1	RGCY	9 cut(s)	8, 172, 196, 247, 355, 369, 464, 478, 563
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	2 cut(s)	363, 465
DpnI	GATC	1 cut(s)	262
DpnII	GATC	1 cut(s)	260
DraI	TTTAAA	1 cut(s)	373
Ecl136II	GAGCTC	2 cut(s)	172, 464
Eco130I	CCWWGG	1 cut(s)	91
Eco24I	GRGCYC	2 cut(s)	174, 466
Eco47I	GGWCC	2 cut(s)	28, 389
Eco53kI	GAGCTC	2 cut(s)	172, 464
EcoICRI	GAGCTC	2 cut(s)	172, 464
EcoRII	CCWGG	2 cut(s)	42, 180
EcoT14I	CCWWGG	1 cut(s)	91
EcoT38I	GRGCYC	2 cut(s)	174, 466
ErhI	CCWWGG	1 cut(s)	91
FaeI	CATG	3 cut(s)	82, 512, 521
FaiI	YATR	9 cut(s)	33, 76, 80, 98, 285, 420, 510, 519, 560
FalI	AAGNNNNNCTT	2 cut(s)	223, 255
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	3 cut(s)	78, 508, 517
FblI	GTMKAC	1 cut(s)	97
Fnu4HI	GCNGC	3 cut(s)	129, 165, 534
FokI	GGATG	1 cut(s)	566
FriOI	GRGCYC	2 cut(s)	174, 466
Fsp4HI	GCNGC	3 cut(s)	129, 165, 534
FspBI	CTAG	2 cut(s)	101, 201
GluI	GCNGC	3 cut(s)	129, 165, 534
HaeIII	GGCC	1 cut(s)	355
Hin1II	CATG	3 cut(s)	82, 512, 521
HinfI	GANTC	2 cut(s)	359, 485
HphI	GGTGA	1 cut(s)	80
Hpy166II	GTNNAC	3 cut(s)	40, 98, 431
Hpy188I	TCNGA	1 cut(s)	364
Hpy188III	TCNNGA	1 cut(s)	56
Hpy8I	GTNNAC	3 cut(s)	40, 98, 431
HpyAV	CCTTC	1 cut(s)	202
HpyCH4III	ACNGT	2 cut(s)	344, 547
HpyCH4V	TGCA	7 cut(s)	4, 131, 167, 305, 422, 491, 500
HpyF10VI	GCNNNNNNNGC	3 cut(s)	488, 497, 530
HpyF3I	CTNAG	2 cut(s)	363, 465
Hsp92II	CATG	3 cut(s)	82, 512, 521
Kzo9I	GATC	1 cut(s)	260
LmnI	GCTCC	1 cut(s)	461
Lsp1109I	GCAGC	3 cut(s)	115, 151, 545
LweI	GCATC	1 cut(s)	487
MaeI	CTAG	2 cut(s)	101, 201
MaeIII	GTNAC	1 cut(s)	443
MalI	GATC	1 cut(s)	262
MboI	GATC	1 cut(s)	260
MflI	RGATCY	1 cut(s)	260
MhlI	GDGCHC	2 cut(s)	174, 466
MluCI	AATT	4 cut(s)	134, 324, 348, 456
MnlI	CCTC	2 cut(s)	58, 535
MseI	TTAA	1 cut(s)	372
MslI	CAYNNNNRTG	1 cut(s)	300
MspA1I	CMGCKG	1 cut(s)	128
MspR9I	CCNGG	2 cut(s)	44, 182
MvaI	CCWGG	2 cut(s)	44, 182
MwoI	GCNNNNNNNGC	3 cut(s)	488, 497, 530
NdeII	GATC	1 cut(s)	260
NlaIII	CATG	3 cut(s)	82, 512, 521
NlaIV	GGNNCC	1 cut(s)	514
NspI	RCATGY	1 cut(s)	82
PciI	ACATGT	1 cut(s)	78
PfeI	GAWTC	2 cut(s)	359, 485
PflMI	CCANNNNNTGG	1 cut(s)	405
PkrI	GCNGC	3 cut(s)	130, 166, 535
PscI	ACATGT	1 cut(s)	78
Psp124BI	GAGCTC	2 cut(s)	174, 466
Psp6I	CCWGG	2 cut(s)	42, 180
PspGI	CCWGG	2 cut(s)	42, 180
PspN4I	GGNNCC	1 cut(s)	514
PspPI	GGNCC	3 cut(s)	28, 354, 389
PstI	CTGCAG	1 cut(s)	169
PstNI	CAGNNNCTG	1 cut(s)	488
PsuI	RGATCY	1 cut(s)	260
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
RseI	CAYNNNNRTG	1 cut(s)	300
SacI	GAGCTC	2 cut(s)	174, 466
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	3 cut(s)	129, 165, 534
Sau3AI	GATC	1 cut(s)	260
Sau96I	GGNCC	3 cut(s)	28, 354, 389
ScrFI	CCNGG	2 cut(s)	44, 182
SduI	GDGCHC	2 cut(s)	174, 466
SfaNI	GCATC	1 cut(s)	487
SfcI	CTRYAG	1 cut(s)	165
SinI	GGWCC	2 cut(s)	28, 389
SmiMI	CAYNNNNRTG	1 cut(s)	300
Sse9I	AATT	4 cut(s)	134, 324, 348, 456
SsiI	CCGC	1 cut(s)	126
SspMI	CTAG	2 cut(s)	101, 201
SstI	GAGCTC	2 cut(s)	174, 466
StyD4I	CCNGG	2 cut(s)	42, 180
StyI	CCWWGG	1 cut(s)	91
TaaI	ACNGT	2 cut(s)	344, 547
TasI	AATT	4 cut(s)	134, 324, 348, 456
TfiI	GAWTC	2 cut(s)	359, 485
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TscAI	CASTG	2 cut(s)	181, 349
TseI	GCWGC	3 cut(s)	128, 164, 533
TspDTI	ATGAA	1 cut(s)	393
TspRI	CASTG	2 cut(s)	181, 349
Van91I	CCANNNNNTGG	1 cut(s)	405
VpaK11BI	GGWCC	2 cut(s)	28, 389
XapI	RAATTY	2 cut(s)	134, 348
XceI	RCATGY	1 cut(s)	82
XmiI	GTMKAC	1 cut(s)	97
XspI	CTAG	2 cut(s)	101, 201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.