MD02G1285800.v1.1

Protein LATERAL ROOT PRIMORDIUM

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0002187
Physical Location & Seq
Reverse (-)
34273863 .. 34276419
2557 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1285800.v1.1.491

Sequence Viewer

Length: 1044 bp
ATGATAATAACATACTATTTGAAGTGGGAGTTCATATTCTGTTGCAGAAGCAGTCTCTTCAAAGCTCCATCCATCTCTCTCCCCCTCCCTTTGCAAATCAAATCAAAATCCTATGAAACCATGTTGGGACTCAGAGATATCCTCCTCATTGCCCCAACTCCAACTTCCTTGCACCACCAACAACATCAACCCATTTCCTCCGAACACCACACAGCCCTCCCTCTGCCGTCCTCCGCCGCTCTCGGCGTCGGCCTTGGAATCTTCCCTCTTCTCACCGCCACCCCACACGCACCAATAGCCGAGGGCAACTCTGACACTTCCCACTTCTGGGGACTCAGGAAGTGCCAAGACCCCAACTCTTCGAAGCAGGACATGCTCAACTTTGGAAACCAAAACCATGGTGGCGCTCAGCAGCATGAACAGGTTGTGGACTGTCATGGCAATAATGACAGAGACGGCGCCGGTGGTGGCAAGAGCTCCAATATGAAGGCTTGCAAGGACTGCGGAAACAGGGCAAAGAAGGGGTGTGAGTACAGGAGGTGCAGGACTTGCTGCAGAGGACACGGCTATCACTGCTCTACTCACGTGAAGAGCACGTGGGTACCGGCGTCCAGGCGGCGCGAGCGTCAGAATATGGTCACAGTTGCTGTTCCTGGCGTTGGCGGTGGTAGCGGCGGCGGAGAAGGTTCTTCTGGATCTTCTTCTGTTGCCAAAAGACCAAGAGTTGCTGTTCCATCACAGAATGCAAATGCAAATATCAAACGCTCGTTGCCGGATAAAGTTCGTGCCCCTGCAGTTTTCCGGTGCCACAGAGTCACCGCGATCAGTAACGGCGAAGCTGAGTTAGCGTATCAGGCGACGGTGAAAATAAGCGGCCATGTTTTCAGGGGGTTGCTGTATGATCATGGGGTTGATGAGAACAACACATTACCGTGTATTTCACAACCGAATTTGGAAAGTGATACAAACCAAAGAAATGCGGACTCTGCTTCTACTCCGACTGTTCCTCCATCAAACAATGCCTGTCCAACCTCAACCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF702

Protein Analysis

348

Amino Acids

37.33

Weight (kDa)

9.15

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF702 PF05142 163 - 305 2.4e-55 Domain of unknown function (DUF702)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 601
AccB1I GGYRCC 3 cut(s) 458, 601, 804
AccBSI CCGCTC 1 cut(s) 239
AccII CGCG 2 cut(s) 621, 821
AclWI GGATC 1 cut(s) 703
AcoI YGGCCR 1 cut(s) 874
AcsI RAATTY 1 cut(s) 949
AcvI CACGTG 2 cut(s) 586, 597
AcyI GRCGYC 3 cut(s) 246, 459, 608
AfaI GTAC 2 cut(s) 533, 603
AfiI CCNNNNNNNGG 3 cut(s) 327, 328, 659
AgsI TTSAA 2 cut(s) 22, 61
AjnI CCWGG 2 cut(s) 611, 652
AjuI GAANNNNNNNTTGG 2 cut(s) 148, 180
AluBI AGCT 4 cut(s) 65, 477, 839, 1041
AluI AGCT 4 cut(s) 65, 477, 839, 1041
Alw21I GWGCWC 2 cut(s) 479, 596
Alw26I GTCTC 2 cut(s) 59, 447
AlwI GGATC 1 cut(s) 703
AlwNI CAGNNNCTG 1 cut(s) 647
AoxI GGCC 2 cut(s) 250, 874
ApeKI GCWGC 2 cut(s) 412, 552
ApoI RAATTY 1 cut(s) 949
Asp718I GGTACC 1 cut(s) 601
AspLEI GCGC 3 cut(s) 407, 461, 621
AsuHPI GGTGA 3 cut(s) 265, 808, 874
AsuII TTCGAA 1 cut(s) 362
BaeGI GKGCMC 1 cut(s) 790
BaeI ACNNNNGTAYC 4 cut(s) 585, 593, 618, 626
BanI GGYRCC 3 cut(s) 458, 601, 804
BanII GRGCYC 1 cut(s) 479
BbrPI CACGTG 2 cut(s) 586, 597
Bbv12I GWGCWC 2 cut(s) 479, 596
BbvI GCAGC 2 cut(s) 424, 539
BccI CCATC 4 cut(s) 76, 80, 742, 1018
BceAI ACGGC 4 cut(s) 211, 472, 580, 847
BciT130I CCWGG 2 cut(s) 613, 654
BclI TGATCA 1 cut(s) 901
BcoDI GTCTC 2 cut(s) 59, 447
BfmI CTRYAG 2 cut(s) 553, 792
BfoI RGCGCY 2 cut(s) 408, 462
BisI GCNGC 7 cut(s) 237, 413, 553, 617, 673, 676, 874
BlpI GCTNAGC 1 cut(s) 408
BlsI GCNGC 7 cut(s) 238, 414, 554, 618, 674, 677, 875
Bme1390I CCNGG 2 cut(s) 613, 654
BmiI GGNNCC 3 cut(s) 460, 603, 806
BmrFI CCNGG 2 cut(s) 613, 654
BplI GAGNNNNNCTC 4 cut(s) 126, 158, 293, 325
Bpu1102I GCTNAGC 1 cut(s) 408
Bpu14I TTCGAA 1 cut(s) 362
BsaAI YACGTR 2 cut(s) 586, 597
BsaHI GRCGYC 3 cut(s) 246, 459, 608
BsaJI CCNNGG 3 cut(s) 253, 300, 397
BsaWI WCCGGW 1 cut(s) 801
BsaXI ACNNNNNCTCC 2 cut(s) 991, 1021
Bsc4I CCNNNNNNNGG 3 cut(s) 327, 328, 659
Bse118I RCCGGY 2 cut(s) 461, 604
Bse3DI GCAATG 1 cut(s) 147
BseBI CCWGG 2 cut(s) 613, 654
BseDI CCNNGG 3 cut(s) 253, 300, 397
BseGI GGATG 1 cut(s) 68
BseLI CCNNNNNNNGG 3 cut(s) 327, 328, 659
BseMI GCAATG 1 cut(s) 147
BseMII CTCAG 4 cut(s) 145, 349, 422, 831
BseRI GAGGAG 1 cut(s) 134
BseSI GKGCMC 1 cut(s) 790
BseXI GCAGC 2 cut(s) 424, 539
BsgI GTGCAG 1 cut(s) 562
Bsh1236I CGCG 2 cut(s) 621, 821
BshFI GGCC 2 cut(s) 252, 876
BshNI GGYRCC 3 cut(s) 458, 601, 804
BsiHKAI GWGCWC 2 cut(s) 479, 596
BsiSI CCGG 4 cut(s) 462, 605, 773, 802
BslFI GGGAC 2 cut(s) 141, 345
BslI CCNNNNNNNGG 3 cut(s) 327, 328, 659
BsmAI GTCTC 2 cut(s) 59, 447
BsmBI CGTCTC 1 cut(s) 447
BsmFI GGGAC 2 cut(s) 141, 345
BsmI GAATGC 1 cut(s) 748
BsnI GGCC 2 cut(s) 252, 876
Bsp119I TTCGAA 1 cut(s) 362
Bsp1286I GDGCHC 3 cut(s) 479, 596, 790
Bsp143I GATC 3 cut(s) 695, 822, 901
Bsp1720I GCTNAGC 1 cut(s) 408
Bsp19I CCATGG 1 cut(s) 397
BspANI GGCC 2 cut(s) 252, 876
BspCNI CTCAG 4 cut(s) 144, 348, 421, 832
BspFNI CGCG 2 cut(s) 621, 821
BspLI GGNNCC 3 cut(s) 460, 603, 806
BspMAI CTGCAG 2 cut(s) 557, 796
BspPI GGATC 1 cut(s) 703
BspQI GCTCTTC 1 cut(s) 584
BspT104I TTCGAA 1 cut(s) 362
BspT107I GGYRCC 3 cut(s) 458, 601, 804
BsrBI CCGCTC 1 cut(s) 239
BsrDI GCAATG 1 cut(s) 147
BsrFI RCCGGY 2 cut(s) 461, 604
BssAI RCCGGY 2 cut(s) 461, 604
BssECI CCNNGG 3 cut(s) 253, 300, 397
BssMI GATC 3 cut(s) 695, 822, 901
BssNI GRCGYC 3 cut(s) 246, 459, 608
BssT1I CCWWGG 2 cut(s) 253, 397
Bst2UI CCWGG 2 cut(s) 613, 654
Bst4CI ACNGT 5 cut(s) 434, 643, 862, 933, 1003
Bst6I CTCTTC 4 cut(s) 62, 273, 364, 584
BstACI GRCGYC 3 cut(s) 246, 459, 608
BstAPI GCANNNNNTGC 3 cut(s) 373, 501, 549
BstBAI YACGTR 2 cut(s) 586, 597
BstBI TTCGAA 1 cut(s) 362
BstC8I GCNNGC 2 cut(s) 493, 623
BstDEI CTNAG 4 cut(s) 131, 335, 408, 840
BstDSI CCRYGG 1 cut(s) 397
BstF5I GGATG 1 cut(s) 68
BstFNI CGCG 2 cut(s) 621, 821
BstH2I RGCGCY 2 cut(s) 408, 462
BstHHI GCGC 3 cut(s) 407, 461, 621
BstKTI GATC 3 cut(s) 698, 825, 904
BstMAI GTCTC 2 cut(s) 59, 447
BstMBI GATC 3 cut(s) 695, 822, 901
BstNI CCWGG 2 cut(s) 613, 654
BstNSI RCATGY 1 cut(s) 376
BstSCI CCNGG 2 cut(s) 611, 652
BstSFI CTRYAG 2 cut(s) 553, 792
BstSLI GKGCMC 1 cut(s) 790
BstUI CGCG 2 cut(s) 621, 821
BstV1I GCAGC 2 cut(s) 424, 539
BstX2I RGATCY 1 cut(s) 695
BstXI CCANNNNNNTGG 1 cut(s) 398
BstYI RGATCY 1 cut(s) 695
BsuRI GGCC 2 cut(s) 252, 876
BtgI CCRYGG 1 cut(s) 397
BtsCI GGATG 1 cut(s) 68
BtsI GCAGTG 1 cut(s) 571
BtsIMutI CAGTG 1 cut(s) 571
Cac8I GCNNGC 2 cut(s) 493, 623
CaiI CAGNNNCTG 1 cut(s) 647
CfoI GCGC 3 cut(s) 407, 461, 621
Cfr10I RCCGGY 2 cut(s) 461, 604
CseI GACGC 3 cut(s) 235, 597, 614
Csp6I GTAC 2 cut(s) 532, 602
CviAII CATG 7 cut(s) 121, 373, 398, 416, 437, 878, 905
CviQI GTAC 2 cut(s) 532, 602
DdeI CTNAG 4 cut(s) 131, 335, 408, 840
DinI GGCGCC 1 cut(s) 460
DpnI GATC 3 cut(s) 697, 824, 903
DpnII GATC 3 cut(s) 695, 822, 901
EaeI YGGCCR 1 cut(s) 874
Eam1104I CTCTTC 4 cut(s) 62, 273, 364, 584
EarI CTCTTC 4 cut(s) 62, 273, 364, 584
EciI GGCGGA 2 cut(s) 223, 693
Ecl136II GAGCTC 1 cut(s) 477
Eco130I CCWWGG 2 cut(s) 253, 397
Eco24I GRGCYC 1 cut(s) 479
Eco32I GATATC 1 cut(s) 139
Eco53kI GAGCTC 1 cut(s) 477
Eco72I CACGTG 2 cut(s) 586, 597
EcoICRI GAGCTC 1 cut(s) 477
EcoRII CCWGG 2 cut(s) 611, 652
EcoRV GATATC 1 cut(s) 139
EcoT14I CCWWGG 2 cut(s) 253, 397
EcoT38I GRGCYC 1 cut(s) 479
EgeI GGCGCC 1 cut(s) 460
EheI GGCGCC 1 cut(s) 460
ErhI CCWWGG 2 cut(s) 253, 397
Esp3I CGTCTC 1 cut(s) 447
FaeI CATG 7 cut(s) 124, 376, 401, 419, 440, 881, 908
FaqI GGGAC 2 cut(s) 141, 345
FatI CATG 7 cut(s) 120, 372, 397, 415, 436, 877, 904
FbaI TGATCA 1 cut(s) 901
Fnu4HI GCNGC 7 cut(s) 237, 413, 553, 617, 673, 676, 874
FokI GGATG 1 cut(s) 55
FriOI GRGCYC 1 cut(s) 479
Fsp4HI GCNGC 7 cut(s) 237, 413, 553, 617, 673, 676, 874
GlaI GCGC 3 cut(s) 406, 460, 620
GluI GCNGC 7 cut(s) 237, 413, 553, 617, 673, 676, 874
HaeII RGCGCY 2 cut(s) 408, 462
HaeIII GGCC 2 cut(s) 252, 876
HapII CCGG 4 cut(s) 462, 605, 773, 802
HgaI GACGC 3 cut(s) 235, 597, 614
HhaI GCGC 3 cut(s) 407, 461, 621
Hin1I GRCGYC 3 cut(s) 246, 459, 608
Hin1II CATG 7 cut(s) 124, 376, 401, 419, 440, 881, 908
Hin6I GCGC 3 cut(s) 405, 459, 619
HinP1I GCGC 3 cut(s) 405, 459, 619
HinfI GANTC 5 cut(s) 129, 258, 333, 813, 983
HpaII CCGG 4 cut(s) 462, 605, 773, 802
HphI GGTGA 3 cut(s) 265, 808, 874
Hpy166II GTNNAC 1 cut(s) 430
Hpy188I TCNGA 5 cut(s) 134, 202, 313, 630, 999
Hpy188III TCNNGA 2 cut(s) 337, 693
Hpy8I GTNNAC 1 cut(s) 430
Hpy99I CGWCG 2 cut(s) 251, 862
HpyAV CCTTC 3 cut(s) 481, 514, 677
HpyCH4III ACNGT 5 cut(s) 434, 643, 862, 933, 1003
HpyCH4IV ACGT 2 cut(s) 585, 596
HpyCH4V TGCA 9 cut(s) 45, 94, 172, 495, 543, 555, 746, 752, 794
HpyF3I CTNAG 4 cut(s) 131, 335, 408, 840
HpySE526I ACGT 2 cut(s) 585, 596
Hsp92I GRCGYC 3 cut(s) 246, 459, 608
Hsp92II CATG 7 cut(s) 124, 376, 401, 419, 440, 881, 908
HspAI GCGC 3 cut(s) 405, 459, 619
KasI GGCGCC 1 cut(s) 458
KpnI GGTACC 1 cut(s) 605
Ksp22I TGATCA 1 cut(s) 901
Kzo9I GATC 3 cut(s) 695, 822, 901
LguI GCTCTTC 1 cut(s) 584
LmnI GCTCC 2 cut(s) 70, 482
Lsp1109I GCAGC 2 cut(s) 424, 539
MaeII ACGT 2 cut(s) 585, 596
MaeIII GTNAC 3 cut(s) 637, 814, 827
MalI GATC 3 cut(s) 697, 824, 903
MbiI CCGCTC 1 cut(s) 239
MboI GATC 3 cut(s) 695, 822, 901
MboII GAAGA 8 cut(s) 49, 253, 260, 351, 601, 681, 690, 693
MflI RGATCY 1 cut(s) 695
MhlI GDGCHC 3 cut(s) 479, 596, 790
MluCI AATT 1 cut(s) 949
Mly113I GGCGCC 1 cut(s) 459
MlyI GAGTC 4 cut(s) 123, 327, 822, 977
MmeI TCCRAC 2 cut(s) 185, 1022
MslI CAYNNNNRTG 1 cut(s) 931
MspA1I CMGCKG 1 cut(s) 1041
MspI CCGG 4 cut(s) 462, 605, 773, 802
MspR9I CCNGG 2 cut(s) 613, 654
Mva1269I GAATGC 1 cut(s) 748
MvaI CCWGG 2 cut(s) 613, 654
MvnI CGCG 2 cut(s) 621, 821
NarI GGCGCC 1 cut(s) 459
NcoI CCATGG 1 cut(s) 397
NdeII GATC 3 cut(s) 695, 822, 901
NlaIII CATG 7 cut(s) 124, 376, 401, 419, 440, 881, 908
NlaIV GGNNCC 3 cut(s) 460, 603, 806
NmeAIII GCCGAG 2 cut(s) 222, 325
NmuCI GTSAC 2 cut(s) 637, 814
NspI RCATGY 1 cut(s) 376
NspV TTCGAA 1 cut(s) 362
PciSI GCTCTTC 1 cut(s) 584
PctI GAATGC 1 cut(s) 748
PfeI GAWTC 1 cut(s) 258
PkrI GCNGC 7 cut(s) 238, 414, 554, 618, 674, 677, 875
PleI GAGTC 4 cut(s) 123, 327, 821, 977
PluTI GGCGCC 1 cut(s) 462
PmaCI CACGTG 2 cut(s) 586, 597
PmlI CACGTG 2 cut(s) 586, 597
PpsI GAGTC 4 cut(s) 123, 327, 821, 977
Ppu21I YACGTR 2 cut(s) 586, 597
Psp124BI GAGCTC 1 cut(s) 479
Psp6I CCWGG 2 cut(s) 611, 652
PspCI CACGTG 2 cut(s) 586, 597
PspGI CCWGG 2 cut(s) 611, 652
PspN4I GGNNCC 3 cut(s) 460, 603, 806
PstI CTGCAG 2 cut(s) 557, 796
PstNI CAGNNNCTG 1 cut(s) 647
PsuI RGATCY 1 cut(s) 695
PvuII CAGCTG 1 cut(s) 1041
RsaI GTAC 2 cut(s) 533, 603
RsaNI GTAC 2 cut(s) 532, 602
RseI CAYNNNNRTG 1 cut(s) 931
SacI GAGCTC 1 cut(s) 479
SapI GCTCTTC 1 cut(s) 584
SatI GCNGC 7 cut(s) 237, 413, 553, 617, 673, 676, 874
Sau3AI GATC 3 cut(s) 695, 822, 901
SchI GAGTC 4 cut(s) 123, 327, 822, 977
ScrFI CCNGG 2 cut(s) 613, 654
SduI GDGCHC 3 cut(s) 479, 596, 790
SfcI CTRYAG 2 cut(s) 553, 792
SfoI GGCGCC 1 cut(s) 460
SfuI TTCGAA 1 cut(s) 362
SgrAI CRCCGGYG 1 cut(s) 461
SmiMI CAYNNNNRTG 1 cut(s) 931
Sse9I AATT 1 cut(s) 949
SspDI GGCGCC 1 cut(s) 458
SstI GAGCTC 1 cut(s) 479
StyD4I CCNGG 2 cut(s) 611, 652
StyI CCWWGG 2 cut(s) 253, 397
TaaI ACNGT 5 cut(s) 434, 643, 862, 933, 1003
TaiI ACGT 2 cut(s) 588, 599
TaqI TCGA 1 cut(s) 362
TasI AATT 1 cut(s) 949
TatI WGTACW 1 cut(s) 531
TauI GCSGC 5 cut(s) 239, 619, 675, 678, 876
TfiI GAWTC 1 cut(s) 258
TscAI CASTG 1 cut(s) 578
TseFI GTSAC 2 cut(s) 637, 814
TseI GCWGC 2 cut(s) 412, 552
Tsp45I GTSAC 2 cut(s) 637, 814
TspDTI ATGAA 4 cut(s) 22, 129, 432, 500
TspRI CASTG 1 cut(s) 578
XapI RAATTY 1 cut(s) 949
XceI RCATGY 1 cut(s) 376
XcmI CCANNNNNNNNNTGG 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.