RchiOBHm_Chr1g0319531

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002187
Physical Location & Seq
Reverse (-)
7178255 .. 7178720
466 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54977

Sequence Viewer

Length: 435 bp
ATGCTCTCTCTGTCTAGAAGTTCTCTCCTAGGGTTTCTAGGCGGCGGCAACAATTTGATTCATTTGACTCGAACGGGTGGCTACCCTCCCTCTCTGGTCTCTGATGAAGGTGGTCTCAATGCTGTTGTACGTTGGATCCTCTTGGCATTGGGAGGTCTCGGCTTCCTTCTTCTTGTTTCTAGTGCTCGGTGCTCTTCTGAGTCTCCGGTGATGGGTTATGGTGGCCTTCCTCCGGCTTGGAGTGTTGTGGGTCGAGATCTAGCATGGTTTATGGAGTGCTCTGGTGGTTGGGCTGTGGGGGAATCGACTTGCTTCCCTTCTGTGTCCGCCGGCGTTAGATCTGGAGCTTTATTTGATGTGTGGAGGTGGCGCGTGCGGCGGCCAGGTGATGATGGGGGTATAATCGCCGGGGGAGGGGGGGGGCGTCGATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

14.99

Weight (kDa)

9.14

Isoelectric Point (pI)

67.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 372
AciI CCGC 5 cut(s) 42, 45, 327, 376, 379
AclWI GGATC 2 cut(s) 130, 143
AcoI YGGCCR 1 cut(s) 380
AcyI GRCGYC 1 cut(s) 424
AfaI GTAC 1 cut(s) 129
AfiI CCNNNNNNNGG 3 cut(s) 212, 232, 414
AjnI CCWGG 1 cut(s) 382
AluBI AGCT 1 cut(s) 347
AluI AGCT 1 cut(s) 347
Alw21I GWGCWC 3 cut(s) 187, 194, 281
Alw26I GTCTC 4 cut(s) 103, 119, 161, 207
AlwI GGATC 2 cut(s) 130, 143
AoxI GGCC 2 cut(s) 223, 380
AspA2I CCTAGG 1 cut(s) 28
AspLEI GCGC 1 cut(s) 372
AsuC2I CCSGG 1 cut(s) 409
AsuHPI GGTGA 2 cut(s) 220, 398
AvrII CCTAGG 1 cut(s) 28
BamHI GGATCC 1 cut(s) 135
Bbv12I GWGCWC 3 cut(s) 187, 194, 281
BccI CCATC 2 cut(s) 205, 386
BciT130I CCWGG 1 cut(s) 384
BcnI CCSGG 1 cut(s) 409
BcoDI GTCTC 4 cut(s) 103, 119, 161, 207
BfaI CTAG 5 cut(s) 15, 29, 38, 180, 260
BglII AGATCT 2 cut(s) 256, 338
BisI GCNGC 4 cut(s) 43, 46, 377, 380
BlnI CCTAGG 1 cut(s) 28
BlsI GCNGC 4 cut(s) 44, 47, 378, 381
Bme1390I CCNGG 2 cut(s) 384, 409
BmiI GGNNCC 1 cut(s) 137
BmrFI CCNGG 2 cut(s) 384, 409
BpmI CTGGAG 1 cut(s) 363
BpuMI CCSGG 1 cut(s) 409
BsaHI GRCGYC 1 cut(s) 424
BsaI GGTCTC 3 cut(s) 103, 119, 161
BsaJI CCNNGG 2 cut(s) 28, 408
BsaWI WCCGGW 1 cut(s) 205
Bsc4I CCNNNNNNNGG 3 cut(s) 212, 232, 414
Bse118I RCCGGY 1 cut(s) 329
BseBI CCWGG 1 cut(s) 384
BseDI CCNNGG 2 cut(s) 28, 408
BseLI CCNNNNNNNGG 3 cut(s) 212, 232, 414
BseMII CTCAG 1 cut(s) 189
Bsh1236I CGCG 1 cut(s) 372
BshFI GGCC 2 cut(s) 225, 382
BsiHKAI GWGCWC 3 cut(s) 187, 194, 281
BsiSI CCGG 4 cut(s) 206, 233, 330, 408
BslI CCNNNNNNNGG 3 cut(s) 212, 232, 414
BsmAI GTCTC 4 cut(s) 103, 119, 161, 207
BsnI GGCC 2 cut(s) 225, 382
Bso31I GGTCTC 3 cut(s) 103, 119, 161
Bsp1286I GDGCHC 3 cut(s) 187, 194, 281
Bsp143I GATC 3 cut(s) 135, 256, 338
BspACI CCGC 5 cut(s) 42, 45, 327, 376, 379
BspANI GGCC 2 cut(s) 225, 382
BspCNI CTCAG 1 cut(s) 190
BspFNI CGCG 1 cut(s) 372
BspLI GGNNCC 1 cut(s) 137
BspPI GGATC 2 cut(s) 130, 143
BspQI GCTCTTC 1 cut(s) 199
BspTNI GGTCTC 3 cut(s) 103, 119, 161
BsrFI RCCGGY 1 cut(s) 329
BssAI RCCGGY 1 cut(s) 329
BssECI CCNNGG 2 cut(s) 28, 408
BssMI GATC 3 cut(s) 135, 256, 338
BssNI GRCGYC 1 cut(s) 424
BssT1I CCWWGG 1 cut(s) 28
Bst2UI CCWGG 1 cut(s) 384
Bst6I CTCTTC 1 cut(s) 199
BstACI GRCGYC 1 cut(s) 424
BstC8I GCNNGC 2 cut(s) 331, 374
BstDEI CTNAG 1 cut(s) 198
BstFNI CGCG 1 cut(s) 372
BstHHI GCGC 1 cut(s) 372
BstKTI GATC 3 cut(s) 138, 259, 341
BstMAI GTCTC 4 cut(s) 103, 119, 161, 207
BstMBI GATC 3 cut(s) 135, 256, 338
BstMWI GCNNNNNNNGC 1 cut(s) 376
BstNI CCWGG 1 cut(s) 384
BstSCI CCNGG 2 cut(s) 382, 407
BstUI CGCG 1 cut(s) 372
BstX2I RGATCY 3 cut(s) 135, 256, 338
BstYI RGATCY 3 cut(s) 135, 256, 338
BsuRI GGCC 2 cut(s) 225, 382
Cac8I GCNNGC 2 cut(s) 331, 374
CfoI GCGC 1 cut(s) 372
Cfr10I RCCGGY 1 cut(s) 329
CseI GACGC 1 cut(s) 413
Csp6I GTAC 1 cut(s) 128
CviAII CATG 1 cut(s) 264
CviJI RGCY 7 cut(s) 81, 162, 225, 236, 293, 347, 382
CviKI_1 RGCY 7 cut(s) 81, 162, 225, 236, 293, 347, 382
CviQI GTAC 1 cut(s) 128
DdeI CTNAG 1 cut(s) 198
DpnI GATC 3 cut(s) 137, 258, 340
DpnII GATC 3 cut(s) 135, 256, 338
EaeI YGGCCR 1 cut(s) 380
Eam1104I CTCTTC 1 cut(s) 199
EarI CTCTTC 1 cut(s) 199
EciI GGCGGA 1 cut(s) 316
Eco130I CCWWGG 1 cut(s) 28
Eco31I GGTCTC 3 cut(s) 103, 119, 161
EcoRII CCWGG 1 cut(s) 382
EcoT14I CCWWGG 1 cut(s) 28
ErhI CCWWGG 1 cut(s) 28
FaeI CATG 1 cut(s) 267
FaiI YATR 4 cut(s) 219, 265, 272, 401
FatI CATG 1 cut(s) 263
Fnu4HI GCNGC 4 cut(s) 43, 46, 377, 380
Fsp4HI GCNGC 4 cut(s) 43, 46, 377, 380
FspBI CTAG 5 cut(s) 15, 29, 38, 180, 260
GlaI GCGC 1 cut(s) 371
GluI GCNGC 4 cut(s) 43, 46, 377, 380
GsuI CTGGAG 1 cut(s) 363
HaeIII GGCC 2 cut(s) 225, 382
HapII CCGG 4 cut(s) 206, 233, 330, 408
HgaI GACGC 1 cut(s) 413
HhaI GCGC 1 cut(s) 372
Hin1I GRCGYC 1 cut(s) 424
Hin1II CATG 1 cut(s) 267
Hin6I GCGC 1 cut(s) 370
HinP1I GCGC 1 cut(s) 370
HinfI GANTC 5 cut(s) 58, 67, 200, 302, 429
HpaII CCGG 4 cut(s) 206, 233, 330, 408
HphI GGTGA 2 cut(s) 220, 398
Hpy188I TCNGA 2 cut(s) 103, 199
Hpy188III TCNNGA 3 cut(s) 15, 254, 342
Hpy99I CGWCG 1 cut(s) 429
HpyAV CCTTC 4 cut(s) 101, 176, 236, 327
HpyCH4IV ACGT 1 cut(s) 130
HpyF10VI GCNNNNNNNGC 1 cut(s) 376
HpyF3I CTNAG 1 cut(s) 198
HpySE526I ACGT 1 cut(s) 130
Hsp92I GRCGYC 1 cut(s) 424
Hsp92II CATG 1 cut(s) 267
HspAI GCGC 1 cut(s) 370
KroI GCCGGC 1 cut(s) 329
KroNI GCCGGC 1 cut(s) 331
Kzo9I GATC 3 cut(s) 135, 256, 338
LguI GCTCTTC 1 cut(s) 199
LmnI GCTCC 1 cut(s) 344
LpnPI CCDG 9 cut(s) 80, 219, 246, 267, 327, 343, 369, 396, 421
MaeI CTAG 5 cut(s) 15, 29, 38, 180, 260
MaeII ACGT 1 cut(s) 130
MalI GATC 3 cut(s) 137, 258, 340
MboI GATC 3 cut(s) 135, 256, 338
MboII GAAGA 2 cut(s) 161, 186
MflI RGATCY 3 cut(s) 135, 256, 338
MhlI GDGCHC 3 cut(s) 187, 194, 281
MluCI AATT 1 cut(s) 52
MlyI GAGTC 2 cut(s) 61, 209
MmeI TCCRAC 1 cut(s) 113
MnlI CCTC 7 cut(s) 96, 100, 146, 149, 240, 357, 407
MreI CGCCGGCG 1 cut(s) 329
MroNI GCCGGC 1 cut(s) 329
MspI CCGG 4 cut(s) 206, 233, 330, 408
MspR9I CCNGG 2 cut(s) 384, 409
MvaI CCWGG 1 cut(s) 384
MvnI CGCG 1 cut(s) 372
MwoI GCNNNNNNNGC 1 cut(s) 376
NaeI GCCGGC 1 cut(s) 331
NciI CCSGG 1 cut(s) 409
NdeII GATC 3 cut(s) 135, 256, 338
NgoMIV GCCGGC 1 cut(s) 329
NlaIII CATG 1 cut(s) 267
NlaIV GGNNCC 1 cut(s) 137
NmeAIII GCCGAG 1 cut(s) 138
PciSI GCTCTTC 1 cut(s) 199
PdiI GCCGGC 1 cut(s) 331
PfeI GAWTC 3 cut(s) 58, 302, 429
PkrI GCNGC 4 cut(s) 44, 47, 378, 381
PleI GAGTC 2 cut(s) 61, 208
PpsI GAGTC 2 cut(s) 61, 208
Psp6I CCWGG 1 cut(s) 382
PspGI CCWGG 1 cut(s) 382
PspN4I GGNNCC 1 cut(s) 137
PsuI RGATCY 3 cut(s) 135, 256, 338
RsaI GTAC 1 cut(s) 129
RsaNI GTAC 1 cut(s) 128
SapI GCTCTTC 1 cut(s) 199
SatI GCNGC 4 cut(s) 43, 46, 377, 380
Sau3AI GATC 3 cut(s) 135, 256, 338
SchI GAGTC 2 cut(s) 61, 209
ScrFI CCNGG 2 cut(s) 384, 409
SduI GDGCHC 3 cut(s) 187, 194, 281
SetI ASST 6 cut(s) 112, 133, 157, 349, 368, 388
SgrAI CRCCGGYG 1 cut(s) 329
Sse9I AATT 1 cut(s) 52
SsiI CCGC 5 cut(s) 42, 45, 327, 376, 379
SspMI CTAG 5 cut(s) 15, 29, 38, 180, 260
StyD4I CCNGG 2 cut(s) 382, 407
StyI CCWWGG 1 cut(s) 28
TaiI ACGT 1 cut(s) 133
TaqI TCGA 4 cut(s) 70, 253, 305, 427
TasI AATT 1 cut(s) 52
TauI GCSGC 4 cut(s) 45, 48, 379, 382
TfiI GAWTC 3 cut(s) 58, 302, 429
TspDTI ATGAA 2 cut(s) 50, 120
XbaI TCTAGA 1 cut(s) 14
XmaJI CCTAGG 1 cut(s) 28
XspI CTAG 5 cut(s) 15, 29, 38, 180, 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.